RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 SPATA31A5Q5VU36 1347 aa12.57□□□□□ -0.4
GPC6-202ENST00000617456 SPATA31A7Q8IWB4 1347 aa12.57□□□□□ -0.4
GPC6-202ENST00000617456 MINK1Q8N4C8 1332 aaPredicted RBP12.57□□□□□ -0.4
GPC6-202ENST00000617456 ANKARQ7Z5J8 1434 aa12.56□□□□□ -0.4
GPC6-202ENST00000617456 EZH2Q15910 746 aaKnown RBP12.56□□□□□ -0.4
GPC6-202ENST00000617456 TRAK1Q9UPV9 953 aa12.56□□□□□ -0.4
GPC6-202ENST00000617456 NRAPQ86VF7 1730 aa12.55□□□□□ -0.4
GPC6-202ENST00000617456 NGDNQ8NEJ9 315 aaKnown RBP12.55□□□□□ -0.4
GPC6-202ENST00000617456 PRDM11Q9NQV5 511 aa12.55□□□□□ -0.4
GPC6-202ENST00000617456 TRIM37O94972 964 aa12.54□□□□□ -0.4
GPC6-202ENST00000617456 STRN4Q9NRL3 753 aa12.54□□□□□ -0.4
GPC6-202ENST00000617456 PRR36Q9H6K5 1346 aa12.54□□□□□ -0.4
GPC6-202ENST00000617456 CHRNA2Q15822 529 aa12.53□□□□□ -0.4
GPC6-202ENST00000617456 COL14A1Q05707 1796 aaKnown RBP12.53□□□□□ -0.4
GPC6-202ENST00000617456 RGPD1P0DJD0 1748 aa12.52□□□□□ -0.41
GPC6-202ENST00000617456 APBA3O96018 575 aa12.52□□□□□ -0.41
GPC6-202ENST00000617456 STAC3Q96MF2 364 aa12.52□□□□□ -0.41
GPC6-202ENST00000617456 DLC1Q96QB1 1528 aa12.52□□□□□ -0.41
GPC6-202ENST00000617456 TRPM3Q9HCF6 1732 aaPredicted RBP12.51□□□□□ -0.41
GPC6-202ENST00000617456 WASLO00401 505 aaPredicted RBP12.51□□□□□ -0.41
GPC6-202ENST00000617456 NUTM2GQ5VZR2 741 aa12.51□□□□□ -0.41
GPC6-202ENST00000617456 CAMKK2Q96RR4 588 aa12.51□□□□□ -0.41
GPC6-202ENST00000617456 USP35Q9P2H5 1018 aa12.51□□□□□ -0.41
GPC6-202ENST00000617456 KDM2AQ9Y2K7 1162 aa12.51□□□□□ -0.41
GPC6-202ENST00000617456 EIF3AQ14152 1382 aaKnown RBP12.51□□□□□ -0.41
GPC6-202ENST00000617456 ZC3H6P61129 1189 aaKnown RBP12.5□□□□□ -0.41
GPC6-202ENST00000617456 FAM196AQ6ZSG2 479 aa12.5□□□□□ -0.41
GPC6-202ENST00000617456 SPATA31A1Q5TZJ5 1347 aa12.5□□□□□ -0.41
GPC6-202ENST00000617456 KIAA0232Q92628 1395 aa12.5□□□□□ -0.41
GPC6-202ENST00000617456 DISP2A7MBM2 1401 aa12.5□□□□□ -0.41
GPC6-202ENST00000617456 ALS2Q96Q42 1657 aa12.5□□□□□ -0.41
GPC6-202ENST00000617456 ADGRB2O60241 1585 aa12.49□□□□□ -0.41
GPC6-202ENST00000617456 THSD7AQ9UPZ6 1657 aa12.48□□□□□ -0.41
GPC6-202ENST00000617456 TULP4Q9NRJ4 1543 aa12.48□□□□□ -0.41
GPC6-202ENST00000617456 EVA1CP58658 441 aa12.48□□□□□ -0.41
GPC6-202ENST00000617456 TNS1Q9HBL0 1735 aaKnown RBP12.48□□□□□ -0.41
GPC6-202ENST00000617456 ADGRB1O14514 1584 aa12.47□□□□□ -0.41
GPC6-202ENST00000617456 PDE3BQ13370 1112 aa12.47□□□□□ -0.41
GPC6-202ENST00000617456 DCAF11Q8TEB1 546 aa12.47□□□□□ -0.41
GPC6-202ENST00000617456 RAB3GAP2Q9H2M9 1393 aa12.46□□□□□ -0.41
GPC6-202ENST00000617456 YY1P25490 414 aa12.46□□□□□ -0.41
GPC6-202ENST00000617456 NUDT16Q96DE0 195 aaKnown RBP12.46□□□□□ -0.41
GPC6-202ENST00000617456 NBPF8Q3BBV2 869 aa12.45□□□□□ -0.42
GPC6-202ENST00000617456 NBPF14Q5TI25 921 aa12.45□□□□□ -0.42
GPC6-202ENST00000617456 PPP1R1BQ9UD71 204 aaPredicted RBP12.45□□□□□ -0.42
GPC6-202ENST00000617456 LARP1Q6PKG0 1096 aaKnown RBP12.44□□□□□ -0.42
GPC6-202ENST00000617456 CRYBG1Q9Y4K1 1723 aa12.44□□□□□ -0.42
GPC6-202ENST00000617456 PARD3Q8TEW0 1356 aa12.43□□□□□ -0.42
GPC6-202ENST00000617456 PPP4R3CPQ6ZMV5 832 aa12.43□□□□□ -0.42
GPC6-202ENST00000617456 BARGINQ6ZT62 677 aa12.43□□□□□ -0.42
GPC6-202ENST00000617456 TCP11L2Q8N4U5 519 aa12.43□□□□□ -0.42
GPC6-202ENST00000617456 CDK19Q9BWU1 502 aa12.43□□□□□ -0.42
GPC6-202ENST00000617456 SSH2Q76I76 1423 aa12.43□□□□□ -0.42
GPC6-202ENST00000617456 ACEP12821 1306 aa12.41□□□□□ -0.42
GPC6-202ENST00000617456 ATP7BP35670 1465 aa12.41□□□□□ -0.42
GPC6-202ENST00000617456 ZBTB7CA1YPR0 619 aa12.41□□□□□ -0.42
GPC6-202ENST00000617456 ABTB2Q8N961 1025 aa12.41□□□□□ -0.42
GPC6-202ENST00000617456 PHRF1Q9P1Y6 1649 aaKnown RBP12.4□□□□□ -0.42
GPC6-202ENST00000617456 DCAF8L1A6NGE4 600 aa12.4□□□□□ -0.42
GPC6-202ENST00000617456 SPON1Q9HCB6 807 aa12.4□□□□□ -0.42
GPC6-202ENST00000617456 CAMTA1Q9Y6Y1 1673 aa12.39□□□□□ -0.43
GPC6-202ENST00000617456 KCNQ2O43526 872 aa12.39□□□□□ -0.43
GPC6-202ENST00000617456 BCL11AQ9H165 835 aa12.39□□□□□ -0.43
GPC6-202ENST00000617456 CCDC61Q9Y6R9 512 aa12.39□□□□□ -0.43
GPC6-202ENST00000617456 ITSN1Q15811 1721 aa12.38□□□□□ -0.43
GPC6-202ENST00000617456 NUP188Q5SRE5 1749 aa12.38□□□□□ -0.43
GPC6-202ENST00000617456 RREB1Q92766 1687 aa12.38□□□□□ -0.43
GPC6-202ENST00000617456 THRAP3Q9Y2W1 955 aaKnown RBP12.37□□□□□ -0.43
GPC6-202ENST00000617456 POLR3AO14802 1390 aaPredicted RBP12.37□□□□□ -0.43
GPC6-202ENST00000617456 ARHGEF28Q8N1W1 1705 aaKnown RBP12.37□□□□□ -0.43
GPC6-202ENST00000617456 USP19O94966 1318 aa12.37□□□□□ -0.43
GPC6-202ENST00000617456 NRKQ7Z2Y5 1582 aa12.36□□□□□ -0.43
GPC6-202ENST00000617456 CPDO75976 1380 aa12.36□□□□□ -0.43
GPC6-202ENST00000617456 PLEKHG3A1L390 1219 aa12.36□□□□□ -0.43
GPC6-202ENST00000617456 GCP02774 474 aa12.36□□□□□ -0.43
GPC6-202ENST00000617456 NLRP13Q86W25 1043 aa12.36□□□□□ -0.43
GPC6-202ENST00000617456 SRPK2P78362 688 aaKnown RBP12.35□□□□□ -0.43
GPC6-202ENST00000617456 NINLQ9Y2I6 1382 aa12.34□□□□□ -0.43
GPC6-202ENST00000617456 PTF1AQ7RTS3 328 aa12.34□□□□□ -0.43
GPC6-202ENST00000617456 ANO8Q9HCE9 1232 aaPredicted RBP12.34□□□□□ -0.43
GPC6-202ENST00000617456 COL5A2P05997 1499 aaPredicted RBP12.34□□□□□ -0.43
GPC6-202ENST00000617456 LMO7Q8WWI1 1683 aa12.33□□□□□ -0.44
GPC6-202ENST00000617456 C11orf95C9JLR9 678 aaPredicted RBP12.33□□□□□ -0.44
GPC6-202ENST00000617456 ZBTB7AO95365 584 aa12.33□□□□□ -0.44
GPC6-202ENST00000617456 BCL11BQ9C0K0 894 aaPredicted RBP12.33□□□□□ -0.44
GPC6-202ENST00000617456 CABP2Q9NPB3 220 aa12.33□□□□□ -0.44
GPC6-202ENST00000617456 OVOS2A0A0G2JMS6 1433 aa12.33□□□□□ -0.44
GPC6-202ENST00000617456 OVOS2A0A0J9YW53 1432 aa12.33□□□□□ -0.44
GPC6-202ENST00000617456 OVOS2Q6IE36 1432 aa12.33□□□□□ -0.44
GPC6-202ENST00000617456 TOPAZ1Q8N9V7 1692 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 CRB1P82279 1406 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 PPIP5K1Q6PFW1 1433 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 NLRP6P59044 892 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 DDB1Q16531 1140 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 NBPF1Q3BBV0 1214 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 NCBP3Q53F19 620 aaKnown RBP12.32□□□□□ -0.44
GPC6-202ENST00000617456 TOM1L2Q6ZVM7 507 aa12.32□□□□□ -0.44
GPC6-202ENST00000617456 PDGFDQ9GZP0 370 aaPredicted RBP12.32□□□□□ -0.44
GPC6-202ENST00000617456 PLSCR1O15162 318 aa12.31□□□□□ -0.44
GPC6-202ENST00000617456 ATF5Q9Y2D1 282 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms