RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	CADPS2	Q86UW7	1296 aa		31.75	■■■□□ 2.67
CCND3-223	ENST00000616010	BRD4	O60885	1362 aa	Predicted RBP	31.73	■■■□□ 2.67
CCND3-223	ENST00000616010	PPP2R1A	P30153	589 aa		31.73	■■■□□ 2.67
CCND3-223	ENST00000616010	ORAI2	Q96SN7	254 aa		31.71	■■■□□ 2.67
CCND3-223	ENST00000616010	KIF1A	Q12756	1690 aa		31.71	■■■□□ 2.67
CCND3-223	ENST00000616010	SSH2	Q76I76	1423 aa		31.7	■■■□□ 2.67
CCND3-223	ENST00000616010	TTC21B	Q7Z4L5	1316 aa		31.7	■■■□□ 2.67
CCND3-223	ENST00000616010	NME9	Q86XW9	330 aa		31.7	■■■□□ 2.66
CCND3-223	ENST00000616010	LTBP4	Q8N2S1	1624 aa		31.69	■■■□□ 2.66
CCND3-223	ENST00000616010	TNNT2	P45379	298 aa	Predicted RBP	31.69	■■■□□ 2.66
CCND3-223	ENST00000616010	YTHDC1	Q96MU7	727 aa	Known RBP	31.68	■■■□□ 2.66
CCND3-223	ENST00000616010	TTC21A	Q8NDW8	1320 aa		31.63	■■■□□ 2.65
CCND3-223	ENST00000616010	ZRANB1	Q9UGI0	708 aa		31.63	■■■□□ 2.65
CCND3-223	ENST00000616010	PIK3C2A	O00443	1686 aa		31.62	■■■□□ 2.65
CCND3-223	ENST00000616010	FOXO3	O43524	673 aa		31.6	■■■□□ 2.65
CCND3-223	ENST00000616010	COG3	Q96JB2	828 aa		31.59	■■■□□ 2.65
CCND3-223	ENST00000616010	PSME1	Q06323	249 aa		31.59	■■■□□ 2.65
CCND3-223	ENST00000616010	OVOS2	A0A0J9YW53	1432 aa		31.59	■■■□□ 2.65
CCND3-223	ENST00000616010	OVOS2	Q6IE36	1432 aa		31.59	■■■□□ 2.65
CCND3-223	ENST00000616010	FAM9B	Q8IZU0	186 aa		31.58	■■■□□ 2.65
CCND3-223	ENST00000616010	PAK3	O75914	559 aa	Predicted RBP	31.56	■■■□□ 2.64
CCND3-223	ENST00000616010	XPC	Q01831	940 aa	Predicted RBP	31.54	■■■□□ 2.64
CCND3-223	ENST00000616010	PNISR	Q8TF01	805 aa	Known RBP	31.54	■■■□□ 2.64
CCND3-223	ENST00000616010	SLAIN2	Q9P270	581 aa		31.54	■■■□□ 2.64
CCND3-223	ENST00000616010	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.53	■■■□□ 2.64
CCND3-223	ENST00000616010	SCAF1	Q9H7N4	1312 aa	Known RBP	31.52	■■■□□ 2.64
CCND3-223	ENST00000616010	MTHFS	P49914	203 aa		31.51	■■■□□ 2.64
CCND3-223	ENST00000616010	USP54	Q70EL1	1684 aa		31.51	■■■□□ 2.64
CCND3-223	ENST00000616010	BRINP3	Q76B58	766 aa		31.51	■■■□□ 2.63
CCND3-223	ENST00000616010	MARF1	Q9Y4F3	1742 aa	Known RBP	31.51	■■■□□ 2.63
CCND3-223	ENST00000616010	USP31	Q70CQ4	1352 aa		31.5	■■■□□ 2.63
CCND3-223	ENST00000616010	ABTB2	Q8N961	1025 aa		31.49	■■■□□ 2.63
CCND3-223	ENST00000616010	MAP2	P11137	1827 aa	Known RBP	31.49	■■■□□ 2.63
CCND3-223	ENST00000616010	FBLN1	P23142	703 aa		31.48	■■■□□ 2.63
CCND3-223	ENST00000616010	KRT28	Q7Z3Y7	464 aa		31.48	■■■□□ 2.63
CCND3-223	ENST00000616010	DDX17	Q92841	729 aa	Known RBP	31.48	■■■□□ 2.63
CCND3-223	ENST00000616010	NPHP3	Q7Z494	1330 aa		31.47	■■■□□ 2.63
CCND3-223	ENST00000616010	NLRP6	P59044	892 aa		31.47	■■■□□ 2.63
CCND3-223	ENST00000616010	NUTM2G	Q5VZR2	741 aa		31.47	■■■□□ 2.63
CCND3-223	ENST00000616010	AATK	Q6ZMQ8	1374 aa		31.46	■■■□□ 2.63
CCND3-223	ENST00000616010	PXDN	Q92626	1479 aa		31.44	■■■□□ 2.62
CCND3-223	ENST00000616010	CFAP53	Q96M91	514 aa		31.42	■■■□□ 2.62
CCND3-223	ENST00000616010	SHPRH	Q149N8	1683 aa		31.42	■■■□□ 2.62
CCND3-223	ENST00000616010	ALS2	Q96Q42	1657 aa		31.42	■■■□□ 2.62
CCND3-223	ENST00000616010	POLK	Q9UBT6	870 aa		31.42	■■■□□ 2.62
CCND3-223	ENST00000616010	SMG6	Q86US8	1419 aa	Known RBP	31.42	■■■□□ 2.62
CCND3-223	ENST00000616010	SOX12	O15370	315 aa		31.41	■■■□□ 2.62
CCND3-223	ENST00000616010	RRS1	Q15050	365 aa	Known RBP	31.4	■■■□□ 2.62
CCND3-223	ENST00000616010	EMILIN1	Q9Y6C2	1016 aa		31.4	■■■□□ 2.62
CCND3-223	ENST00000616010	WDR43	Q15061	677 aa	Known RBP eCLIP	31.39	■■■□□ 2.62
CCND3-223	ENST00000616010	COL3A1	P02461	1466 aa	Predicted RBP	31.39	■■■□□ 2.62
CCND3-223	ENST00000616010	PPM1G	O15355	546 aa	Predicted RBP	31.39	■■■□□ 2.62
CCND3-223	ENST00000616010	LMOD2	Q6P5Q4	547 aa		31.38	■■■□□ 2.61
CCND3-223	ENST00000616010	SBNO1	A3KN83	1393 aa		31.38	■■■□□ 2.61
CCND3-223	ENST00000616010	NHSL1	Q5SYE7	1610 aa		31.38	■■■□□ 2.61
CCND3-223	ENST00000616010	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.37	■■■□□ 2.61
CCND3-223	ENST00000616010	ROBO1	Q9Y6N7	1651 aa		31.36	■■■□□ 2.61
CCND3-223	ENST00000616010	TNS3	Q68CZ2	1445 aa		31.36	■■■□□ 2.61
CCND3-223	ENST00000616010	PNPLA6	Q8IY17	1366 aa		31.35	■■■□□ 2.61
CCND3-223	ENST00000616010	HNRNPU	Q00839	825 aa	Known RBP eCLIP	31.34	■■■□□ 2.61
CCND3-223	ENST00000616010	PEAK1	Q9H792	1746 aa		31.32	■■■□□ 2.61
CCND3-223	ENST00000616010	ADAMTS8	Q9UP79	889 aa		31.32	■■■□□ 2.61
CCND3-223	ENST00000616010	SLIT3	O75094	1523 aa		31.31	■■■□□ 2.6
CCND3-223	ENST00000616010	NFAT5	O94916	1531 aa		31.31	■■■□□ 2.6
CCND3-223	ENST00000616010	INSR	P06213	1382 aa		31.3	■■■□□ 2.6
CCND3-223	ENST00000616010	SOS2	Q07890	1332 aa	Predicted RBP	31.3	■■■□□ 2.6
CCND3-223	ENST00000616010	BLM	P54132	1417 aa	Predicted RBP	31.29	■■■□□ 2.6
CCND3-223	ENST00000616010	MAP3K19	Q56UN5	1328 aa		31.29	■■■□□ 2.6
CCND3-223	ENST00000616010	SPATA31A3	Q5VYP0	1347 aa		31.29	■■■□□ 2.6
CCND3-223	ENST00000616010	PLEKHG5	O94827	1062 aa		31.29	■■■□□ 2.6
CCND3-223	ENST00000616010	USP19	O94966	1318 aa		31.28	■■■□□ 2.6
CCND3-223	ENST00000616010	LTN1	O94822	1766 aa		31.28	■■■□□ 2.6
CCND3-223	ENST00000616010	MED1	Q15648	1581 aa	Predicted RBP	31.27	■■■□□ 2.6
CCND3-223	ENST00000616010	DIAPH1	O60610	1272 aa	Known RBP	31.26	■■■□□ 2.59
CCND3-223	ENST00000616010	ARHGEF10	O15013	1369 aa		31.26	■■■□□ 2.59
CCND3-223	ENST00000616010	KCNH5	Q8NCM2	988 aa		31.25	■■■□□ 2.59
CCND3-223	ENST00000616010	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.24	■■■□□ 2.59
CCND3-223	ENST00000616010	NUDC	Q9Y266	331 aa		31.23	■■■□□ 2.59
CCND3-223	ENST00000616010	FLT4	P35916	1363 aa		31.23	■■■□□ 2.59
CCND3-223	ENST00000616010	IQSEC2	Q5JU85	1478 aa		31.23	■■■□□ 2.59
CCND3-223	ENST00000616010	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.23	■■■□□ 2.59
CCND3-223	ENST00000616010	TOM1	O60784	492 aa		31.22	■■■□□ 2.59
CCND3-223	ENST00000616010	CRYBG1	Q9Y4K1	1723 aa		31.22	■■■□□ 2.59
CCND3-223	ENST00000616010	GC	P02774	474 aa		31.22	■■■□□ 2.59
CCND3-223	ENST00000616010	U2SURP	O15042	1029 aa	Known RBP	31.21	■■■□□ 2.59
CCND3-223	ENST00000616010	AMPH	P49418	695 aa		31.21	■■■□□ 2.59
CCND3-223	ENST00000616010	SENP3-EIF4A1	A0A087X0R7	540 aa		31.2	■■■□□ 2.59
CCND3-223	ENST00000616010	CENPB	P07199	599 aa	Predicted RBP	31.2	■■■□□ 2.59
CCND3-223	ENST00000616010	U2AF1L5	P0DN76	240 aa	Predicted RBP	31.2	■■■□□ 2.58
CCND3-223	ENST00000616010	U2AF1	Q01081	240 aa	Known RBP eCLIP	31.2	■■■□□ 2.58
CCND3-223	ENST00000616010	KIF24	Q5T7B8	1368 aa		31.19	■■■□□ 2.58
CCND3-223	ENST00000616010	HSP90AB2P	Q58FF8	381 aa		31.19	■■■□□ 2.58
CCND3-223	ENST00000616010	CCDC146	Q8IYE0	955 aa		31.17	■■■□□ 2.58
CCND3-223	ENST00000616010	RTL1	A6NKG5	1358 aa		31.17	■■■□□ 2.58
CCND3-223	ENST00000616010	IL13	P35225	146 aa		31.17	■■■□□ 2.58
CCND3-223	ENST00000616010	PIP4K2B	P78356	416 aa		31.16	■■■□□ 2.58
CCND3-223	ENST00000616010	UBAP1L	F5GYI3	381 aa		31.15	■■■□□ 2.58
CCND3-223	ENST00000616010	HOXC9	P31274	260 aa		31.15	■■■□□ 2.58
CCND3-223	ENST00000616010	ZBED9	Q6R2W3	1325 aa		31.15	■■■□□ 2.58
CCND3-223	ENST00000616010	CABLES1	Q8TDN4	633 aa		31.15	■■■□□ 2.58

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms