RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TNNT2P45379 298 aaPredicted RBP19.23■□□□□ 0.67
USP39-220ENST00000613444 NGDNQ8NEJ9 315 aaKnown RBP19.22■□□□□ 0.67
USP39-220ENST00000613444 PHF8Q9UPP1 1060 aa19.22■□□□□ 0.67
USP39-220ENST00000613444 C1orf167Q5SNV9 1468 aa19.21■□□□□ 0.67
USP39-220ENST00000613444 ZRANB1Q9UGI0 708 aa19.21■□□□□ 0.67
USP39-220ENST00000613444 MAP2P11137 1827 aaKnown RBP19.21■□□□□ 0.67
USP39-220ENST00000613444 MST1RQ04912 1400 aa19.21■□□□□ 0.67
USP39-220ENST00000613444 PIK3C2AO00443 1686 aa19.2■□□□□ 0.66
USP39-220ENST00000613444 OVOS2A0A0J9YW53 1432 aa19.19■□□□□ 0.66
USP39-220ENST00000613444 OVOS2Q6IE36 1432 aa19.19■□□□□ 0.66
USP39-220ENST00000613444 SHPRHQ149N8 1683 aa19.19■□□□□ 0.66
USP39-220ENST00000613444 ESCO1Q5FWF5 840 aa19.19■□□□□ 0.66
USP39-220ENST00000613444 ORAI2Q96SN7 254 aa19.19■□□□□ 0.66
USP39-220ENST00000613444 MARF1Q9Y4F3 1742 aaKnown RBP19.19■□□□□ 0.66
USP39-220ENST00000613444 TTC21AQ8NDW8 1320 aa19.18■□□□□ 0.66
USP39-220ENST00000613444 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
USP39-220ENST00000613444 KIF1AQ12756 1690 aa19.18■□□□□ 0.66
USP39-220ENST00000613444 MTHFSP49914 203 aa19.18■□□□□ 0.66
USP39-220ENST00000613444 USP54Q70EL1 1684 aa19.18■□□□□ 0.66
USP39-220ENST00000613444 MSH6P52701 1360 aa19.17■□□□□ 0.66
USP39-220ENST00000613444 CENPBP07199 599 aaPredicted RBP19.17■□□□□ 0.66
USP39-220ENST00000613444 ATF3P18847 181 aa19.17■□□□□ 0.66
USP39-220ENST00000613444 INSRP06213 1382 aa19.16■□□□□ 0.66
USP39-220ENST00000613444 HNRNPUQ00839 825 aaKnown RBP eCLIP19.16■□□□□ 0.66
USP39-220ENST00000613444 CADPS2Q86UW7 1296 aa19.15■□□□□ 0.66
USP39-220ENST00000613444 COG3Q96JB2 828 aa19.15■□□□□ 0.66
USP39-220ENST00000613444 AATKQ6ZMQ8 1374 aa19.14■□□□□ 0.66
USP39-220ENST00000613444 USP31Q70CQ4 1352 aa19.14■□□□□ 0.66
USP39-220ENST00000613444 FBLN1P23142 703 aa19.14■□□□□ 0.65
USP39-220ENST00000613444 COL3A1P02461 1466 aaPredicted RBP19.14■□□□□ 0.65
USP39-220ENST00000613444 TRPM3Q9HCF6 1732 aaPredicted RBP19.14■□□□□ 0.65
USP39-220ENST00000613444 BLMP54132 1417 aaPredicted RBP19.13■□□□□ 0.65
USP39-220ENST00000613444 SMG6Q86US8 1419 aaKnown RBP19.13■□□□□ 0.65
USP39-220ENST00000613444 PNPLA6Q8IY17 1366 aa19.12■□□□□ 0.65
USP39-220ENST00000613444 ADAMTS8Q9UP79 889 aa19.12■□□□□ 0.65
USP39-220ENST00000613444 POLKQ9UBT6 870 aa19.12■□□□□ 0.65
USP39-220ENST00000613444 LTBP4Q8N2S1 1624 aa19.11■□□□□ 0.65
USP39-220ENST00000613444 FOXO3O43524 673 aa19.1■□□□□ 0.65
USP39-220ENST00000613444 PSME1Q06323 249 aa19.09■□□□□ 0.65
USP39-220ENST00000613444 WDR43Q15061 677 aaKnown RBP eCLIP19.09■□□□□ 0.65
USP39-220ENST00000613444 CFAP53Q96M91 514 aa19.08■□□□□ 0.65
USP39-220ENST00000613444 ZBED9Q6R2W3 1325 aa19.08■□□□□ 0.64
USP39-220ENST00000613444 EMILIN1Q9Y6C2 1016 aa19.07■□□□□ 0.64
USP39-220ENST00000613444 CDK12Q9NYV4 1490 aaPredicted RBP19.07■□□□□ 0.64
USP39-220ENST00000613444 PEAK1Q9H792 1746 aa19.06■□□□□ 0.64
USP39-220ENST00000613444 ALS2Q96Q42 1657 aa19.06■□□□□ 0.64
USP39-220ENST00000613444 PAK3O75914 559 aaPredicted RBP19.06■□□□□ 0.64
USP39-220ENST00000613444 ABTB2Q8N961 1025 aa19.06■□□□□ 0.64
USP39-220ENST00000613444 NLRP6P59044 892 aa19.05■□□□□ 0.64
USP39-220ENST00000613444 RRS1Q15050 365 aaKnown RBP19.05■□□□□ 0.64
USP39-220ENST00000613444 XPCQ01831 940 aaPredicted RBP19.05■□□□□ 0.64
USP39-220ENST00000613444 KRT28Q7Z3Y7 464 aa19.04■□□□□ 0.64
USP39-220ENST00000613444 SLAIN2Q9P270 581 aa19.03■□□□□ 0.64
USP39-220ENST00000613444 NUTM2GQ5VZR2 741 aa19.03■□□□□ 0.64
USP39-220ENST00000613444 BRINP3Q76B58 766 aa19.03■□□□□ 0.64
USP39-220ENST00000613444 PXDNQ92626 1479 aa19.03■□□□□ 0.64
USP39-220ENST00000613444 DDX17Q92841 729 aaKnown RBP19.02■□□□□ 0.64
USP39-220ENST00000613444 SENP3-EIF4A1A0A087X0R7 540 aa19.02■□□□□ 0.63
USP39-220ENST00000613444 NFAT5O94916 1531 aa19.01■□□□□ 0.63
USP39-220ENST00000613444 PPM1GO15355 546 aaPredicted RBP19■□□□□ 0.63
USP39-220ENST00000613444 NPHP3Q7Z494 1330 aa19■□□□□ 0.63
USP39-220ENST00000613444 DIAPH1O60610 1272 aaKnown RBP19■□□□□ 0.63
USP39-220ENST00000613444 SLIT3O75094 1523 aa19■□□□□ 0.63
USP39-220ENST00000613444 LTN1O94822 1766 aa18.99■□□□□ 0.63
USP39-220ENST00000613444 MAP3K19Q56UN5 1328 aa18.99■□□□□ 0.63
USP39-220ENST00000613444 SBNO1A3KN83 1393 aa18.99■□□□□ 0.63
USP39-220ENST00000613444 SOX12O15370 315 aa18.98■□□□□ 0.63
USP39-220ENST00000613444 IL13P35225 146 aa18.98■□□□□ 0.63
USP39-220ENST00000613444 CCDC146Q8IYE0 955 aa18.98■□□□□ 0.63
USP39-220ENST00000613444 NHSL1Q5SYE7 1610 aa18.97■□□□□ 0.63
USP39-220ENST00000613444 NUDCQ9Y266 331 aa18.97■□□□□ 0.63
USP39-220ENST00000613444 USP19O94966 1318 aa18.96■□□□□ 0.63
USP39-220ENST00000613444 PHRF1Q9P1Y6 1649 aaKnown RBP18.96■□□□□ 0.63
USP39-220ENST00000613444 U2AF1L5P0DN76 240 aaPredicted RBP18.96■□□□□ 0.63
USP39-220ENST00000613444 U2AF1Q01081 240 aaKnown RBP eCLIP18.96■□□□□ 0.63
USP39-220ENST00000613444 MED1Q15648 1581 aaPredicted RBP18.95■□□□□ 0.62
USP39-220ENST00000613444 RGPD1P0DJD0 1748 aa18.95■□□□□ 0.62
USP39-220ENST00000613444 CRYBG1Q9Y4K1 1723 aa18.95■□□□□ 0.62
USP39-220ENST00000613444 IQSEC2Q5JU85 1478 aa18.95■□□□□ 0.62
USP39-220ENST00000613444 TNS3Q68CZ2 1445 aa18.95■□□□□ 0.62
USP39-220ENST00000613444 KIF24Q5T7B8 1368 aa18.94■□□□□ 0.62
USP39-220ENST00000613444 U2SURPO15042 1029 aaKnown RBP18.94■□□□□ 0.62
USP39-220ENST00000613444 HSP90AB2PQ58FF8 381 aa18.94■□□□□ 0.62
USP39-220ENST00000613444 FLT4P35916 1363 aa18.94■□□□□ 0.62
USP39-220ENST00000613444 SOS2Q07890 1332 aaPredicted RBP18.94■□□□□ 0.62
USP39-220ENST00000613444 SPATA31A3Q5VYP0 1347 aa18.93■□□□□ 0.62
USP39-220ENST00000613444 RUNDC1Q96C34 613 aa18.93■□□□□ 0.62
USP39-220ENST00000613444 PLEKHF1Q96S99 279 aa18.93■□□□□ 0.62
USP39-220ENST00000613444 APAF1O14727 1248 aa18.92■□□□□ 0.62
USP39-220ENST00000613444 EIF4A2Q14240 407 aaKnown RBP18.92■□□□□ 0.62
USP39-220ENST00000613444 SALL2Q9Y467 1007 aaPredicted RBP18.92■□□□□ 0.62
USP39-220ENST00000613444 AEBP2Q6ZN18 517 aaPredicted RBP18.92■□□□□ 0.62
USP39-220ENST00000613444 KCNH5Q8NCM2 988 aa18.92■□□□□ 0.62
USP39-220ENST00000613444 GCP02774 474 aa18.91■□□□□ 0.62
USP39-220ENST00000613444 ROBO1Q9Y6N7 1651 aa18.91■□□□□ 0.62
USP39-220ENST00000613444 ZNF521Q96K83 1311 aa18.91■□□□□ 0.62
USP39-220ENST00000613444 LMOD2Q6P5Q4 547 aa18.91■□□□□ 0.62
USP39-220ENST00000613444 RTL1A6NKG5 1358 aa18.9■□□□□ 0.62
USP39-220ENST00000613444 HOXC9P31274 260 aa18.89■□□□□ 0.62
USP39-220ENST00000613444 AMPHP49418 695 aa18.89■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms