RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 EVA1CP58658 441 aa13.91□□□□□ -0.18
VRK3-224ENST00000601849 ADGRB1O14514 1584 aa13.9□□□□□ -0.18
VRK3-224ENST00000601849 PLCH1Q4KWH8 1693 aa13.9□□□□□ -0.18
VRK3-224ENST00000601849 SPATA31A5Q5VU36 1347 aa13.9□□□□□ -0.19
VRK3-224ENST00000601849 SPATA31A7Q8IWB4 1347 aa13.9□□□□□ -0.19
VRK3-224ENST00000601849 PRR36Q9H6K5 1346 aa13.9□□□□□ -0.19
VRK3-224ENST00000601849 CDK19Q9BWU1 502 aa13.89□□□□□ -0.19
VRK3-224ENST00000601849 CCDC61Q9Y6R9 512 aa13.89□□□□□ -0.19
VRK3-224ENST00000601849 COL14A1Q05707 1796 aaKnown RBP13.88□□□□□ -0.19
VRK3-224ENST00000601849 BRWD3Q6RI45 1802 aa13.87□□□□□ -0.19
VRK3-224ENST00000601849 STRN4Q9NRL3 753 aa13.87□□□□□ -0.19
VRK3-224ENST00000601849 ZC3H6P61129 1189 aaKnown RBP13.86□□□□□ -0.19
VRK3-224ENST00000601849 PDE3BQ13370 1112 aa13.86□□□□□ -0.19
VRK3-224ENST00000601849 NBPF8Q3BBV2 869 aa13.86□□□□□ -0.19
VRK3-224ENST00000601849 FAM196AQ6ZSG2 479 aa13.86□□□□□ -0.19
VRK3-224ENST00000601849 ABTB2Q8N961 1025 aa13.86□□□□□ -0.19
VRK3-224ENST00000601849 ABCA3Q99758 1704 aa13.85□□□□□ -0.19
VRK3-224ENST00000601849 EN1Q05925 392 aaPredicted RBP13.85□□□□□ -0.19
VRK3-224ENST00000601849 ACEP12821 1306 aa13.85□□□□□ -0.19
VRK3-224ENST00000601849 SPATA31A1Q5TZJ5 1347 aa13.85□□□□□ -0.19
VRK3-224ENST00000601849 KIAA0232Q92628 1395 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 TRPM3Q9HCF6 1732 aaPredicted RBP13.84□□□□□ -0.19
VRK3-224ENST00000601849 PLEKHG3A1L390 1219 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 PSDA5PKW4 1024 aaPredicted RBP13.84□□□□□ -0.19
VRK3-224ENST00000601849 SRPK2P78362 688 aaKnown RBP13.84□□□□□ -0.19
VRK3-224ENST00000601849 CHRNA2Q15822 529 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 NUTM2GQ5VZR2 741 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 NLRP13Q86W25 1043 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 ATP7BP35670 1465 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 ALS2Q96Q42 1657 aa13.84□□□□□ -0.19
VRK3-224ENST00000601849 FAM182BQ5T319 152 aa13.83□□□□□ -0.2
VRK3-224ENST00000601849 USP35Q9P2H5 1018 aa13.83□□□□□ -0.2
VRK3-224ENST00000601849 ITSN1Q15811 1721 aa13.83□□□□□ -0.2
VRK3-224ENST00000601849 C11orf95C9JLR9 678 aaPredicted RBP13.82□□□□□ -0.2
VRK3-224ENST00000601849 APBA3O96018 575 aa13.81□□□□□ -0.2
VRK3-224ENST00000601849 THRAP3Q9Y2W1 955 aaKnown RBP13.81□□□□□ -0.2
VRK3-224ENST00000601849 POLR3AO14802 1390 aaPredicted RBP13.81□□□□□ -0.2
VRK3-224ENST00000601849 NRAPQ86VF7 1730 aa13.81□□□□□ -0.2
VRK3-224ENST00000601849 TRIM37O94972 964 aa13.8□□□□□ -0.2
VRK3-224ENST00000601849 NBPF14Q5TI25 921 aa13.8□□□□□ -0.2
VRK3-224ENST00000601849 BARGINQ6ZT62 677 aa13.8□□□□□ -0.2
VRK3-224ENST00000601849 R3HDM1Q15032 1099 aaKnown RBP13.79□□□□□ -0.2
VRK3-224ENST00000601849 TCP11L2Q8N4U5 519 aa13.79□□□□□ -0.2
VRK3-224ENST00000601849 CENPJQ9HC77 1338 aaPredicted RBP13.79□□□□□ -0.2
VRK3-224ENST00000601849 BRD4O60885 1362 aaPredicted RBP13.79□□□□□ -0.2
VRK3-224ENST00000601849 RGPD1P0DJD0 1748 aa13.78□□□□□ -0.2
VRK3-224ENST00000601849 GCP02774 474 aa13.78□□□□□ -0.2
VRK3-224ENST00000601849 EZH2Q15910 746 aaKnown RBP13.78□□□□□ -0.2
VRK3-224ENST00000601849 PARD3Q8TEW0 1356 aa13.78□□□□□ -0.2
VRK3-224ENST00000601849 ARHGEF28Q8N1W1 1705 aaKnown RBP13.78□□□□□ -0.2
VRK3-224ENST00000601849 DISP2A7MBM2 1401 aa13.77□□□□□ -0.21
VRK3-224ENST00000601849 NBPF1Q3BBV0 1214 aa13.77□□□□□ -0.21
VRK3-224ENST00000601849 PPIP5K1Q6PFW1 1433 aa13.76□□□□□ -0.21
VRK3-224ENST00000601849 CPDO75976 1380 aa13.76□□□□□ -0.21
VRK3-224ENST00000601849 ZBTB7CA1YPR0 619 aa13.76□□□□□ -0.21
VRK3-224ENST00000601849 NLRP6P59044 892 aa13.76□□□□□ -0.21
VRK3-224ENST00000601849 LARP1Q6PKG0 1096 aaKnown RBP13.76□□□□□ -0.21
VRK3-224ENST00000601849 CABP2Q9NPB3 220 aa13.76□□□□□ -0.21
VRK3-224ENST00000601849 KIAA1210Q9ULL0 1709 aa13.76□□□□□ -0.21
VRK3-224ENST00000601849 SSH2Q76I76 1423 aa13.75□□□□□ -0.21
VRK3-224ENST00000601849 CAMKK2Q96RR4 588 aa13.75□□□□□ -0.21
VRK3-224ENST00000601849 LRP5O75197 1615 aa13.75□□□□□ -0.21
VRK3-224ENST00000601849 EVC2Q86UK5 1308 aa13.74□□□□□ -0.21
VRK3-224ENST00000601849 ZNF692Q9BU19 519 aaPredicted RBP13.74□□□□□ -0.21
VRK3-224ENST00000601849 CABP1Q9NZU7 370 aa13.74□□□□□ -0.21
VRK3-224ENST00000601849 THSD7AQ9UPZ6 1657 aa13.74□□□□□ -0.21
VRK3-224ENST00000601849 CRYBG1Q9Y4K1 1723 aa13.73□□□□□ -0.21
VRK3-224ENST00000601849 USP19O94966 1318 aa13.73□□□□□ -0.21
VRK3-224ENST00000601849 PHRF1Q9P1Y6 1649 aaKnown RBP13.73□□□□□ -0.21
VRK3-224ENST00000601849 DCAF8L1A6NGE4 600 aa13.73□□□□□ -0.21
VRK3-224ENST00000601849 TOM1L2Q6ZVM7 507 aa13.72□□□□□ -0.21
VRK3-224ENST00000601849 KCNH5Q8NCM2 988 aa13.72□□□□□ -0.21
VRK3-224ENST00000601849 DDB1Q16531 1140 aa13.71□□□□□ -0.21
VRK3-224ENST00000601849 CAMTA1Q9Y6Y1 1673 aa13.7□□□□□ -0.22
VRK3-224ENST00000601849 CDCA7Q9BWT1 371 aaPredicted RBP13.7□□□□□ -0.22
VRK3-224ENST00000601849 PPP1R1BQ9UD71 204 aaPredicted RBP13.7□□□□□ -0.22
VRK3-224ENST00000601849 CRB1P82279 1406 aa13.7□□□□□ -0.22
VRK3-224ENST00000601849 TOPAZ1Q8N9V7 1692 aa13.69□□□□□ -0.22
VRK3-224ENST00000601849 AATKQ6ZMQ8 1374 aa13.69□□□□□ -0.22
VRK3-224ENST00000601849 USP6P35125 1406 aa13.68□□□□□ -0.22
VRK3-224ENST00000601849 CSB-PGBD3P0DP91 1061 aa13.68□□□□□ -0.22
VRK3-224ENST00000601849 L3MBTL2Q969R5 705 aa13.68□□□□□ -0.22
VRK3-224ENST00000601849 COL5A2P05997 1499 aaPredicted RBP13.67□□□□□ -0.22
VRK3-224ENST00000601849 TNS1Q9HBL0 1735 aaKnown RBP13.67□□□□□ -0.22
VRK3-224ENST00000601849 NRKQ7Z2Y5 1582 aa13.67□□□□□ -0.22
VRK3-224ENST00000601849 PLSCR1O15162 318 aa13.67□□□□□ -0.22
VRK3-224ENST00000601849 SPON1Q9HCB6 807 aa13.67□□□□□ -0.22
VRK3-224ENST00000601849 OVOS2A0A0G2JMS6 1433 aa13.66□□□□□ -0.22
VRK3-224ENST00000601849 OVOS2A0A0J9YW53 1432 aa13.66□□□□□ -0.22
VRK3-224ENST00000601849 OVOS2Q6IE36 1432 aa13.66□□□□□ -0.22
VRK3-224ENST00000601849 NEUROD1Q13562 356 aa13.66□□□□□ -0.22
VRK3-224ENST00000601849 WDR17Q8IZU2 1322 aa13.65□□□□□ -0.22
VRK3-224ENST00000601849 TTC21AQ8NDW8 1320 aa13.65□□□□□ -0.22
VRK3-224ENST00000601849 EXOC5O00471 708 aa13.65□□□□□ -0.22
VRK3-224ENST00000601849 BCL11BQ9C0K0 894 aaPredicted RBP13.65□□□□□ -0.22
VRK3-224ENST00000601849 ROCK2O75116 1388 aaKnown RBP13.65□□□□□ -0.22
VRK3-224ENST00000601849 TTC21BQ7Z4L5 1316 aa13.64□□□□□ -0.23
VRK3-224ENST00000601849 LMO7Q8WWI1 1683 aa13.64□□□□□ -0.23
VRK3-224ENST00000601849 KCNQ2O43526 872 aa13.64□□□□□ -0.23
VRK3-224ENST00000601849 QRICH2Q9H0J4 1663 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms