RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ABCA3Q99758 1704 aa9.05□□□□□ -0.96
VRK3-220ENST00000600259 NGDNQ8NEJ9 315 aaKnown RBP9.04□□□□□ -0.96
VRK3-220ENST00000600259 DCAF11Q8TEB1 546 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 NUDT16Q96DE0 195 aaKnown RBP9.04□□□□□ -0.96
VRK3-220ENST00000600259 STAC3Q96MF2 364 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 CAMKK2Q96RR4 588 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 KDM2AQ9Y2K7 1162 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 NRAPQ86VF7 1730 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 DISP2A7MBM2 1401 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 SPATA31A1Q5TZJ5 1347 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 ALS2Q96Q42 1657 aa9.04□□□□□ -0.96
VRK3-220ENST00000600259 RAB3GAP2Q9H2M9 1393 aa9.03□□□□□ -0.96
VRK3-220ENST00000600259 EZH2Q15910 746 aaKnown RBP9.03□□□□□ -0.96
VRK3-220ENST00000600259 TULP4Q9NRJ4 1543 aa9.03□□□□□ -0.96
VRK3-220ENST00000600259 LRP5O75197 1615 aa9.02□□□□□ -0.96
VRK3-220ENST00000600259 KIAA0232Q92628 1395 aa9.02□□□□□ -0.97
VRK3-220ENST00000600259 A0A0G2JS52 829 aa9.02□□□□□ -0.97
VRK3-220ENST00000600259 PLEKHG3A1L390 1219 aa9.02□□□□□ -0.97
VRK3-220ENST00000600259 MYT1Q01538 1121 aa9.02□□□□□ -0.97
VRK3-220ENST00000600259 R3HDM1Q15032 1099 aaKnown RBP9.02□□□□□ -0.97
VRK3-220ENST00000600259 CHRNA2Q15822 529 aa9.02□□□□□ -0.97
VRK3-220ENST00000600259 PRDM11Q9NQV5 511 aa9.02□□□□□ -0.97
VRK3-220ENST00000600259 COL14A1Q05707 1796 aaKnown RBP9.01□□□□□ -0.97
VRK3-220ENST00000600259 EIF3AQ14152 1382 aaKnown RBP9.01□□□□□ -0.97
VRK3-220ENST00000600259 MSH5O43196 834 aa9.01□□□□□ -0.97
VRK3-220ENST00000600259 PAK3O75914 559 aaPredicted RBP9.01□□□□□ -0.97
VRK3-220ENST00000600259 TRIM37O94972 964 aa9.01□□□□□ -0.97
VRK3-220ENST00000600259 ZC3H6P61129 1189 aaKnown RBP9.01□□□□□ -0.97
VRK3-220ENST00000600259 NBPF8Q3BBV2 869 aa9.01□□□□□ -0.97
VRK3-220ENST00000600259 CDK19Q9BWU1 502 aa9.01□□□□□ -0.97
VRK3-220ENST00000600259 THSD7AQ9UPZ6 1657 aa9□□□□□ -0.97
VRK3-220ENST00000600259 POLR3AO14802 1390 aaPredicted RBP9□□□□□ -0.97
VRK3-220ENST00000600259 NUTM2GQ5VZR2 741 aa9□□□□□ -0.97
VRK3-220ENST00000600259 FAM196AQ6ZSG2 479 aa9□□□□□ -0.97
VRK3-220ENST00000600259 BARGINQ6ZT62 677 aa9□□□□□ -0.97
VRK3-220ENST00000600259 CCDC61Q9Y6R9 512 aa9□□□□□ -0.97
VRK3-220ENST00000600259 ATP7BP35670 1465 aa9□□□□□ -0.97
VRK3-220ENST00000600259 ACEP12821 1306 aa9□□□□□ -0.97
VRK3-220ENST00000600259 CRYBG1Q9Y4K1 1723 aa9□□□□□ -0.97
VRK3-220ENST00000600259 APBA3O96018 575 aa8.98□□□□□ -0.97
VRK3-220ENST00000600259 NBPF1Q3BBV0 1214 aa8.98□□□□□ -0.97
VRK3-220ENST00000600259 LARP1Q6PKG0 1096 aaKnown RBP8.98□□□□□ -0.97
VRK3-220ENST00000600259 STRN4Q9NRL3 753 aa8.98□□□□□ -0.97
VRK3-220ENST00000600259 USP19O94966 1318 aa8.98□□□□□ -0.97
VRK3-220ENST00000600259 CAMTA1Q9Y6Y1 1673 aa8.97□□□□□ -0.97
VRK3-220ENST00000600259 CPDO75976 1380 aa8.97□□□□□ -0.97
VRK3-220ENST00000600259 SSH2Q76I76 1423 aa8.97□□□□□ -0.97
VRK3-220ENST00000600259 GCP02774 474 aa8.96□□□□□ -0.98
VRK3-220ENST00000600259 EVA1CP58658 441 aa8.96□□□□□ -0.98
VRK3-220ENST00000600259 TCP11L2Q8N4U5 519 aa8.96□□□□□ -0.98
VRK3-220ENST00000600259 ABTB2Q8N961 1025 aa8.96□□□□□ -0.98
VRK3-220ENST00000600259 USP35Q9P2H5 1018 aa8.96□□□□□ -0.98
VRK3-220ENST00000600259 TNS1Q9HBL0 1735 aaKnown RBP8.96□□□□□ -0.98
VRK3-220ENST00000600259 PARD3Q8TEW0 1356 aa8.96□□□□□ -0.98
VRK3-220ENST00000600259 RGPD1P0DJD0 1748 aa8.95□□□□□ -0.98
VRK3-220ENST00000600259 PDE3BQ13370 1112 aa8.95□□□□□ -0.98
VRK3-220ENST00000600259 THRAP3Q9Y2W1 955 aaKnown RBP8.95□□□□□ -0.98
VRK3-220ENST00000600259 NLRP13Q86W25 1043 aa8.94□□□□□ -0.98
VRK3-220ENST00000600259 PTF1AQ7RTS3 328 aa8.93□□□□□ -0.98
VRK3-220ENST00000600259 PROM2Q8N271 834 aa8.93□□□□□ -0.98
VRK3-220ENST00000600259 CABP2Q9NPB3 220 aa8.93□□□□□ -0.98
VRK3-220ENST00000600259 PHRF1Q9P1Y6 1649 aaKnown RBP8.93□□□□□ -0.98
VRK3-220ENST00000600259 LMO7Q8WWI1 1683 aa8.93□□□□□ -0.98
VRK3-220ENST00000600259 ARHGEF28Q8N1W1 1705 aaKnown RBP8.93□□□□□ -0.98
VRK3-220ENST00000600259 PLSCR1O15162 318 aa8.92□□□□□ -0.98
VRK3-220ENST00000600259 AXIN2Q9Y2T1 843 aa8.92□□□□□ -0.98
VRK3-220ENST00000600259 NRKQ7Z2Y5 1582 aa8.91□□□□□ -0.98
VRK3-220ENST00000600259 COL5A2P05997 1499 aaPredicted RBP8.91□□□□□ -0.98
VRK3-220ENST00000600259 BRD4O60885 1362 aaPredicted RBP8.91□□□□□ -0.98
VRK3-220ENST00000600259 AATKQ6ZMQ8 1374 aa8.91□□□□□ -0.98
VRK3-220ENST00000600259 NBPF14Q5TI25 921 aa8.91□□□□□ -0.98
VRK3-220ENST00000600259 CABP1Q9NZU7 370 aa8.91□□□□□ -0.98
VRK3-220ENST00000600259 TOPAZ1Q8N9V7 1692 aa8.91□□□□□ -0.98
VRK3-220ENST00000600259 PPIP5K1Q6PFW1 1433 aa8.9□□□□□ -0.98
VRK3-220ENST00000600259 C11orf95C9JLR9 678 aaPredicted RBP8.9□□□□□ -0.98
VRK3-220ENST00000600259 KCNQ2O43526 872 aa8.9□□□□□ -0.98
VRK3-220ENST00000600259 NLRP6P59044 892 aa8.9□□□□□ -0.98
VRK3-220ENST00000600259 SRPK2P78362 688 aaKnown RBP8.9□□□□□ -0.98
VRK3-220ENST00000600259 MARCH10Q8NA82 808 aaPredicted RBP8.9□□□□□ -0.98
VRK3-220ENST00000600259 SPON1Q9HCB6 807 aa8.9□□□□□ -0.98
VRK3-220ENST00000600259 CRB1P82279 1406 aa8.89□□□□□ -0.99
VRK3-220ENST00000600259 ITSN1Q15811 1721 aa8.89□□□□□ -0.99
VRK3-220ENST00000600259 CENPJQ9HC77 1338 aaPredicted RBP8.89□□□□□ -0.99
VRK3-220ENST00000600259 RREB1Q92766 1687 aa8.89□□□□□ -0.99
VRK3-220ENST00000600259 ARHGEF25Q86VW2 580 aa8.89□□□□□ -0.99
VRK3-220ENST00000600259 BCL11BQ9C0K0 894 aaPredicted RBP8.89□□□□□ -0.99
VRK3-220ENST00000600259 PDGFDQ9GZP0 370 aaPredicted RBP8.89□□□□□ -0.99
VRK3-220ENST00000600259 ANO8Q9HCE9 1232 aaPredicted RBP8.89□□□□□ -0.99
VRK3-220ENST00000600259 USP6P35125 1406 aa8.88□□□□□ -0.99
VRK3-220ENST00000600259 DDB1Q16531 1140 aa8.88□□□□□ -0.99
VRK3-220ENST00000600259 NUP188Q5SRE5 1749 aa8.88□□□□□ -0.99
VRK3-220ENST00000600259 PEAK1Q9H792 1746 aa8.88□□□□□ -0.99
VRK3-220ENST00000600259 BCL9O00512 1426 aa8.88□□□□□ -0.99
VRK3-220ENST00000600259 WDR17Q8IZU2 1322 aa8.87□□□□□ -0.99
VRK3-220ENST00000600259 SLIT3O75094 1523 aa8.87□□□□□ -0.99
VRK3-220ENST00000600259 YY1P25490 414 aa8.87□□□□□ -0.99
VRK3-220ENST00000600259 KIAA1210Q9ULL0 1709 aa8.87□□□□□ -0.99
VRK3-220ENST00000600259 OVOS2A0A0G2JMS6 1433 aa8.87□□□□□ -0.99
VRK3-220ENST00000600259 OVOS2A0A0J9YW53 1432 aa8.87□□□□□ -0.99
VRK3-220ENST00000600259 OVOS2Q6IE36 1432 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms