RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 CDK12Q9NYV4 1490 aaPredicted RBP13.78□□□□□ -0.2
VRK3-215ENST00000599138 SLIT2O94813 1529 aa13.78□□□□□ -0.2
VRK3-215ENST00000599138 CRYBG1Q9Y4K1 1723 aa13.78□□□□□ -0.2
VRK3-215ENST00000599138 BRD4O60885 1362 aaPredicted RBP13.77□□□□□ -0.21
VRK3-215ENST00000599138 ATRNO75882 1429 aa13.77□□□□□ -0.21
VRK3-215ENST00000599138 CABP1Q9NZU7 370 aa13.77□□□□□ -0.21
VRK3-215ENST00000599138 PAK3O75914 559 aaPredicted RBP13.76□□□□□ -0.21
VRK3-215ENST00000599138 RBM6P78332 1123 aaKnown RBP13.76□□□□□ -0.21
VRK3-215ENST00000599138 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.76□□□□□ -0.21
VRK3-215ENST00000599138 ATAD2Q6PL18 1390 aa13.75□□□□□ -0.21
VRK3-215ENST00000599138 TESK2Q96S53 571 aa13.75□□□□□ -0.21
VRK3-215ENST00000599138 TRPC5Q9UL62 973 aaPredicted RBP13.75□□□□□ -0.21
VRK3-215ENST00000599138 SSH2Q76I76 1423 aa13.74□□□□□ -0.21
VRK3-215ENST00000599138 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
VRK3-215ENST00000599138 USP6P35125 1406 aa13.73□□□□□ -0.21
VRK3-215ENST00000599138 NWD2Q9ULI1 1742 aa13.73□□□□□ -0.21
VRK3-215ENST00000599138 ST20-MTHFSA0A0A6YYL1 179 aa13.73□□□□□ -0.21
VRK3-215ENST00000599138 FAM83GA6ND36 823 aa13.73□□□□□ -0.21
VRK3-215ENST00000599138 HAP1P54257 671 aaPredicted RBP13.73□□□□□ -0.21
VRK3-215ENST00000599138 UNC5CLQ8IV45 518 aa13.73□□□□□ -0.21
VRK3-215ENST00000599138 PLEKHG5O94827 1062 aa13.72□□□□□ -0.21
VRK3-215ENST00000599138 CCER1Q8TC90 406 aaPredicted RBP13.72□□□□□ -0.21
VRK3-215ENST00000599138 AKAP12Q02952 1782 aa13.72□□□□□ -0.21
VRK3-215ENST00000599138 PLCH1Q4KWH8 1693 aa13.72□□□□□ -0.21
VRK3-215ENST00000599138 RGS12O14924 1447 aa13.72□□□□□ -0.21
VRK3-215ENST00000599138 CPSF1Q10570 1443 aaKnown RBP13.72□□□□□ -0.21
VRK3-215ENST00000599138 USP19O94966 1318 aa13.71□□□□□ -0.21
VRK3-215ENST00000599138 ABTB2Q8N961 1025 aa13.71□□□□□ -0.21
VRK3-215ENST00000599138 ZNF692Q9BU19 519 aaPredicted RBP13.71□□□□□ -0.21
VRK3-215ENST00000599138 PHRF1Q9P1Y6 1649 aaKnown RBP13.71□□□□□ -0.22
VRK3-215ENST00000599138 USP47Q96K76 1375 aa13.71□□□□□ -0.22
VRK3-215ENST00000599138 SLC24A1O60721 1099 aa13.7□□□□□ -0.22
VRK3-215ENST00000599138 NUTM2GQ5VZR2 741 aa13.7□□□□□ -0.22
VRK3-215ENST00000599138 GJD4Q96KN9 370 aaPredicted RBP13.7□□□□□ -0.22
VRK3-215ENST00000599138 COL14A1Q05707 1796 aaKnown RBP13.7□□□□□ -0.22
VRK3-215ENST00000599138 CD163L1Q9NR16 1453 aa13.69□□□□□ -0.22
VRK3-215ENST00000599138 NRAPQ86VF7 1730 aa13.68□□□□□ -0.22
VRK3-215ENST00000599138 GLI3P10071 1580 aa13.68□□□□□ -0.22
VRK3-215ENST00000599138 VPS72Q15906 364 aa13.68□□□□□ -0.22
VRK3-215ENST00000599138 NLRP13Q86W25 1043 aa13.68□□□□□ -0.22
VRK3-215ENST00000599138 KIAA0232Q92628 1395 aa13.68□□□□□ -0.22
VRK3-215ENST00000599138 MON2Q7Z3U7 1717 aa13.67□□□□□ -0.22
VRK3-215ENST00000599138 TTC21BQ7Z4L5 1316 aa13.67□□□□□ -0.22
VRK3-215ENST00000599138 NRKQ7Z2Y5 1582 aa13.67□□□□□ -0.22
VRK3-215ENST00000599138 PIK3C2AO00443 1686 aa13.67□□□□□ -0.22
VRK3-215ENST00000599138 CPDO75976 1380 aa13.67□□□□□ -0.22
VRK3-215ENST00000599138 SLIT3O75094 1523 aa13.66□□□□□ -0.22
VRK3-215ENST00000599138 GCP02774 474 aa13.66□□□□□ -0.22
VRK3-215ENST00000599138 SLC12A5Q9H2X9 1139 aa13.66□□□□□ -0.22
VRK3-215ENST00000599138 PRDM11Q9NQV5 511 aa13.66□□□□□ -0.22
VRK3-215ENST00000599138 BTG4Q9NY30 223 aa13.66□□□□□ -0.22
VRK3-215ENST00000599138 KTN1Q86UP2 1357 aaKnown RBP13.66□□□□□ -0.22
VRK3-215ENST00000599138 TTC21AQ8NDW8 1320 aa13.65□□□□□ -0.22
VRK3-215ENST00000599138 ONECUT3O60422 494 aaPredicted RBP13.65□□□□□ -0.22
VRK3-215ENST00000599138 NLRP6P59044 892 aa13.65□□□□□ -0.22
VRK3-215ENST00000599138 ZC3H6P61129 1189 aaKnown RBP13.65□□□□□ -0.22
VRK3-215ENST00000599138 NINLQ9Y2I6 1382 aa13.65□□□□□ -0.22
VRK3-215ENST00000599138 TMC1Q8TDI8 760 aa13.64□□□□□ -0.23
VRK3-215ENST00000599138 TMF1P82094 1093 aa13.63□□□□□ -0.23
VRK3-215ENST00000599138 CHRNA2Q15822 529 aa13.63□□□□□ -0.23
VRK3-215ENST00000599138 UPF1Q92900 1129 aaKnown RBP eCLIP13.63□□□□□ -0.23
VRK3-215ENST00000599138 USP54Q70EL1 1684 aa13.63□□□□□ -0.23
VRK3-215ENST00000599138 LMO7Q8WWI1 1683 aa13.63□□□□□ -0.23
VRK3-215ENST00000599138 A0A1W2PP64 1363 aa13.62□□□□□ -0.23
VRK3-215ENST00000599138 USP31Q70CQ4 1352 aa13.62□□□□□ -0.23
VRK3-215ENST00000599138 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
VRK3-215ENST00000599138 TERF2IPQ9NYB0 399 aa13.62□□□□□ -0.23
VRK3-215ENST00000599138 EDC4Q6P2E9 1401 aaKnown RBP13.62□□□□□ -0.23
VRK3-215ENST00000599138 CAMTA1Q9Y6Y1 1673 aa13.62□□□□□ -0.23
VRK3-215ENST00000599138 SPATA31A5Q5VU36 1347 aa13.62□□□□□ -0.23
VRK3-215ENST00000599138 SPATA31A7Q8IWB4 1347 aa13.62□□□□□ -0.23
VRK3-215ENST00000599138 EP400Q96L91 3159 aa13.6□□□□□ -0.23
VRK3-215ENST00000599138 COL18A1P39060 1754 aa13.6□□□□□ -0.23
VRK3-215ENST00000599138 BRWD3Q6RI45 1802 aa13.6□□□□□ -0.23
VRK3-215ENST00000599138 AATKQ6ZMQ8 1374 aa13.59□□□□□ -0.23
VRK3-215ENST00000599138 CDCA8Q53HL2 280 aa13.59□□□□□ -0.23
VRK3-215ENST00000599138 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.59□□□□□ -0.23
VRK3-215ENST00000599138 SEPT12Q8IYM1 358 aa13.59□□□□□ -0.23
VRK3-215ENST00000599138 KCNH5Q8NCM2 988 aa13.59□□□□□ -0.23
VRK3-215ENST00000599138 CCDC9Q9Y3X0 531 aaKnown RBP13.59□□□□□ -0.23
VRK3-215ENST00000599138 NFAT5O94916 1531 aa13.59□□□□□ -0.23
VRK3-215ENST00000599138 ANKRD36BQ8N2N9 1353 aa13.58□□□□□ -0.23
VRK3-215ENST00000599138 ARHGEF25Q86VW2 580 aa13.58□□□□□ -0.24
VRK3-215ENST00000599138 NME9Q86XW9 330 aa13.58□□□□□ -0.24
VRK3-215ENST00000599138 ZRANB1Q9UGI0 708 aa13.58□□□□□ -0.24
VRK3-215ENST00000599138 SPATA31A1Q5TZJ5 1347 aa13.58□□□□□ -0.24
VRK3-215ENST00000599138 COL5A2P05997 1499 aaPredicted RBP13.56□□□□□ -0.24
VRK3-215ENST00000599138 FAM98CQ17RN3 349 aaKnown RBP13.56□□□□□ -0.24
VRK3-215ENST00000599138 STRN4Q9NRL3 753 aa13.56□□□□□ -0.24
VRK3-215ENST00000599138 THSD7AQ9UPZ6 1657 aa13.56□□□□□ -0.24
VRK3-215ENST00000599138 OVOS2A0A0J9YW53 1432 aa13.56□□□□□ -0.24
VRK3-215ENST00000599138 OVOS2Q6IE36 1432 aa13.56□□□□□ -0.24
VRK3-215ENST00000599138 HSPA5P11021 654 aaKnown RBP13.55□□□□□ -0.24
VRK3-215ENST00000599138 EVA1CP58658 441 aa13.55□□□□□ -0.24
VRK3-215ENST00000599138 EIF4G2P78344 907 aaKnown RBP eCLIP13.55□□□□□ -0.24
VRK3-215ENST00000599138 LARP1Q6PKG0 1096 aaKnown RBP13.55□□□□□ -0.24
VRK3-215ENST00000599138 AXIN2Q9Y2T1 843 aa13.55□□□□□ -0.24
VRK3-215ENST00000599138 MYOM1P52179 1685 aa13.55□□□□□ -0.24
VRK3-215ENST00000599138 ABCC6O95255 1503 aa13.54□□□□□ -0.24
VRK3-215ENST00000599138 BARGINQ6ZT62 677 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms