RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 NRAPQ86VF7 1730 aa24.27■■□□□ 1.48
SHKBP1-215ENST00000597649 HRCP23327 699 aa24.26■■□□□ 1.47
SHKBP1-215ENST00000597649 EN1Q05925 392 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-215ENST00000597649 ALS2Q96Q42 1657 aa24.24■■□□□ 1.47
SHKBP1-215ENST00000597649 NGDNQ8NEJ9 315 aaKnown RBP24.24■■□□□ 1.47
SHKBP1-215ENST00000597649 DCAF11Q8TEB1 546 aa24.24■■□□□ 1.47
SHKBP1-215ENST00000597649 RAB3GAP2Q9H2M9 1393 aa24.24■■□□□ 1.47
SHKBP1-215ENST00000597649 PAK3O75914 559 aaPredicted RBP24.23■■□□□ 1.47
SHKBP1-215ENST00000597649 TULP4Q9NRJ4 1543 aa24.22■■□□□ 1.47
SHKBP1-215ENST00000597649 COL14A1Q05707 1796 aaKnown RBP24.21■■□□□ 1.47
SHKBP1-215ENST00000597649 EIF3AQ14152 1382 aaKnown RBP24.2■■□□□ 1.46
SHKBP1-215ENST00000597649 PRDM11Q9NQV5 511 aa24.2■■□□□ 1.46
SHKBP1-215ENST00000597649 LRP5O75197 1615 aa24.2■■□□□ 1.46
SHKBP1-215ENST00000597649 CHRNA2Q15822 529 aa24.19■■□□□ 1.46
SHKBP1-215ENST00000597649 NUDT16Q96DE0 195 aaKnown RBP24.18■■□□□ 1.46
SHKBP1-215ENST00000597649 KIAA0232Q92628 1395 aa24.16■■□□□ 1.46
SHKBP1-215ENST00000597649 SPATA31A1Q5TZJ5 1347 aa24.16■■□□□ 1.46
SHKBP1-215ENST00000597649 R3HDM1Q15032 1099 aaKnown RBP24.16■■□□□ 1.46
SHKBP1-215ENST00000597649 CRYBG1Q9Y4K1 1723 aa24.15■■□□□ 1.46
SHKBP1-215ENST00000597649 EZH2Q15910 746 aaKnown RBP24.15■■□□□ 1.46
SHKBP1-215ENST00000597649 ZC3H6P61129 1189 aaKnown RBP24.14■■□□□ 1.45
SHKBP1-215ENST00000597649 NUTM2GQ5VZR2 741 aa24.14■■□□□ 1.45
SHKBP1-215ENST00000597649 THSD7AQ9UPZ6 1657 aa24.14■■□□□ 1.45
SHKBP1-215ENST00000597649 STAC3Q96MF2 364 aa24.13■■□□□ 1.45
SHKBP1-215ENST00000597649 CAMKK2Q96RR4 588 aa24.13■■□□□ 1.45
SHKBP1-215ENST00000597649 CDK19Q9BWU1 502 aa24.13■■□□□ 1.45
SHKBP1-215ENST00000597649 STRN4Q9NRL3 753 aa24.13■■□□□ 1.45
SHKBP1-215ENST00000597649 ATP7BP35670 1465 aa24.13■■□□□ 1.45
SHKBP1-215ENST00000597649 DISP2A7MBM2 1401 aa24.12■■□□□ 1.45
SHKBP1-215ENST00000597649 TRIM37O94972 964 aa24.12■■□□□ 1.45
SHKBP1-215ENST00000597649 NBPF8Q3BBV2 869 aa24.1■■□□□ 1.45
SHKBP1-215ENST00000597649 RGPD1P0DJD0 1748 aa24.1■■□□□ 1.45
SHKBP1-215ENST00000597649 FAM196AQ6ZSG2 479 aa24.09■■□□□ 1.45
SHKBP1-215ENST00000597649 ACEP12821 1306 aa24.09■■□□□ 1.45
SHKBP1-215ENST00000597649 USP35Q9P2H5 1018 aa24.08■■□□□ 1.45
SHKBP1-215ENST00000597649 POLR3AO14802 1390 aaPredicted RBP24.06■■□□□ 1.44
SHKBP1-215ENST00000597649 PLEKHG3A1L390 1219 aa24.06■■□□□ 1.44
SHKBP1-215ENST00000597649 APBA3O96018 575 aa24.06■■□□□ 1.44
SHKBP1-215ENST00000597649 TNS1Q9HBL0 1735 aaKnown RBP24.06■■□□□ 1.44
SHKBP1-215ENST00000597649 CCDC61Q9Y6R9 512 aa24.05■■□□□ 1.44
SHKBP1-215ENST00000597649 ARHGEF28Q8N1W1 1705 aaKnown RBP24.04■■□□□ 1.44
SHKBP1-215ENST00000597649 EVA1CP58658 441 aa24.04■■□□□ 1.44
SHKBP1-215ENST00000597649 LARP1Q6PKG0 1096 aaKnown RBP24.04■■□□□ 1.44
SHKBP1-215ENST00000597649 BARGINQ6ZT62 677 aa24.04■■□□□ 1.44
SHKBP1-215ENST00000597649 PHRF1Q9P1Y6 1649 aaKnown RBP24.02■■□□□ 1.44
SHKBP1-215ENST00000597649 SSH2Q76I76 1423 aa24.02■■□□□ 1.44
SHKBP1-215ENST00000597649 ABTB2Q8N961 1025 aa24.02■■□□□ 1.44
SHKBP1-215ENST00000597649 CAMTA1Q9Y6Y1 1673 aa24.02■■□□□ 1.44
SHKBP1-215ENST00000597649 PDE3BQ13370 1112 aa24■■□□□ 1.43
SHKBP1-215ENST00000597649 NBPF1Q3BBV0 1214 aa24■■□□□ 1.43
SHKBP1-215ENST00000597649 ITSN1Q15811 1721 aa23.99■■□□□ 1.43
SHKBP1-215ENST00000597649 TCP11L2Q8N4U5 519 aa23.98■■□□□ 1.43
SHKBP1-215ENST00000597649 USP19O94966 1318 aa23.98■■□□□ 1.43
SHKBP1-215ENST00000597649 CPDO75976 1380 aa23.98■■□□□ 1.43
SHKBP1-215ENST00000597649 PARD3Q8TEW0 1356 aa23.96■■□□□ 1.43
SHKBP1-215ENST00000597649 GCP02774 474 aa23.96■■□□□ 1.43
SHKBP1-215ENST00000597649 TOPAZ1Q8N9V7 1692 aa23.95■■□□□ 1.42
SHKBP1-215ENST00000597649 NRKQ7Z2Y5 1582 aa23.95■■□□□ 1.42
SHKBP1-215ENST00000597649 NLRP13Q86W25 1043 aa23.93■■□□□ 1.42
SHKBP1-215ENST00000597649 CABP2Q9NPB3 220 aa23.93■■□□□ 1.42
SHKBP1-215ENST00000597649 LMO7Q8WWI1 1683 aa23.92■■□□□ 1.42
SHKBP1-215ENST00000597649 THRAP3Q9Y2W1 955 aaKnown RBP23.92■■□□□ 1.42
SHKBP1-215ENST00000597649 SRPK2P78362 688 aaKnown RBP23.91■■□□□ 1.42
SHKBP1-215ENST00000597649 PPIP5K1Q6PFW1 1433 aa23.9■■□□□ 1.42
SHKBP1-215ENST00000597649 NBPF14Q5TI25 921 aa23.89■■□□□ 1.41
SHKBP1-215ENST00000597649 COL5A2P05997 1499 aaPredicted RBP23.88■■□□□ 1.41
SHKBP1-215ENST00000597649 RREB1Q92766 1687 aa23.87■■□□□ 1.41
SHKBP1-215ENST00000597649 CABP1Q9NZU7 370 aa23.87■■□□□ 1.41
SHKBP1-215ENST00000597649 CENPJQ9HC77 1338 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-215ENST00000597649 NUP188Q5SRE5 1749 aa23.85■■□□□ 1.41
SHKBP1-215ENST00000597649 KIAA1210Q9ULL0 1709 aa23.85■■□□□ 1.41
SHKBP1-215ENST00000597649 ZBTB7CA1YPR0 619 aa23.85■■□□□ 1.41
SHKBP1-215ENST00000597649 NLRP6P59044 892 aa23.85■■□□□ 1.41
SHKBP1-215ENST00000597649 PTF1AQ7RTS3 328 aa23.84■■□□□ 1.41
SHKBP1-215ENST00000597649 CRB1P82279 1406 aa23.84■■□□□ 1.41
SHKBP1-215ENST00000597649 AXIN2Q9Y2T1 843 aa23.83■■□□□ 1.41
SHKBP1-215ENST00000597649 BRD4O60885 1362 aaPredicted RBP23.82■■□□□ 1.4
SHKBP1-215ENST00000597649 AATKQ6ZMQ8 1374 aa23.82■■□□□ 1.4
SHKBP1-215ENST00000597649 SPON1Q9HCB6 807 aa23.81■■□□□ 1.4
SHKBP1-215ENST00000597649 USP6P35125 1406 aa23.81■■□□□ 1.4
SHKBP1-215ENST00000597649 KCNQ2O43526 872 aa23.8■■□□□ 1.4
SHKBP1-215ENST00000597649 PARP4Q9UKK3 1724 aaKnown RBP23.8■■□□□ 1.4
SHKBP1-215ENST00000597649 C11orf95C9JLR9 678 aaPredicted RBP23.79■■□□□ 1.4
SHKBP1-215ENST00000597649 PLSCR1O15162 318 aa23.79■■□□□ 1.4
SHKBP1-215ENST00000597649 DDB1Q16531 1140 aa23.78■■□□□ 1.4
SHKBP1-215ENST00000597649 TOM1L2Q6ZVM7 507 aa23.78■■□□□ 1.4
SHKBP1-215ENST00000597649 PROM2Q8N271 834 aa23.78■■□□□ 1.4
SHKBP1-215ENST00000597649 ANO8Q9HCE9 1232 aaPredicted RBP23.78■■□□□ 1.4
SHKBP1-215ENST00000597649 PEAK1Q9H792 1746 aa23.78■■□□□ 1.4
SHKBP1-215ENST00000597649 OVOS2A0A0G2JMS6 1433 aa23.77■■□□□ 1.4
SHKBP1-215ENST00000597649 OVOS2A0A0J9YW53 1432 aa23.77■■□□□ 1.4
SHKBP1-215ENST00000597649 OVOS2Q6IE36 1432 aa23.77■■□□□ 1.4
SHKBP1-215ENST00000597649 YY1P25490 414 aa23.77■■□□□ 1.4
SHKBP1-215ENST00000597649 MARCH10Q8NA82 808 aaPredicted RBP23.77■■□□□ 1.4
SHKBP1-215ENST00000597649 SLIT3O75094 1523 aa23.77■■□□□ 1.4
SHKBP1-215ENST00000597649 BCL11BQ9C0K0 894 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-215ENST00000597649 PDGFDQ9GZP0 370 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-215ENST00000597649 PPP1R1BQ9UD71 204 aaPredicted RBP23.75■■□□□ 1.39
SHKBP1-215ENST00000597649 UTRNP46939 3433 aa23.75■■□□□ 1.39
SHKBP1-215ENST00000597649 COL18A1P39060 1754 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms