RNA–Protein interactions for RNA: ENST00000596726.3

PNKP-209, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 637 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-209ENST00000596726 ATAD2Q6PL18 1390 aa29.81■■■□□ 2.36
PNKP-209ENST00000596726 ST20-MTHFSA0A0A6YYL1 179 aa29.8■■■□□ 2.36
PNKP-209ENST00000596726 TESK2Q96S53 571 aa29.8■■■□□ 2.36
PNKP-209ENST00000596726 USP21Q9UK80 565 aa29.8■■■□□ 2.36
PNKP-209ENST00000596726 QTRT2Q9H974 415 aaKnown RBP29.79■■■□□ 2.36
PNKP-209ENST00000596726 BRD4O60885 1362 aaPredicted RBP29.78■■■□□ 2.36
PNKP-209ENST00000596726 HAP1P54257 671 aaPredicted RBP29.78■■■□□ 2.36
PNKP-209ENST00000596726 BCL9LQ86UU0 1499 aa29.78■■■□□ 2.36
PNKP-209ENST00000596726 AKAP12Q02952 1782 aa29.77■■■□□ 2.36
PNKP-209ENST00000596726 PLEKHG5O94827 1062 aa29.77■■■□□ 2.36
PNKP-209ENST00000596726 USP6P35125 1406 aa29.77■■■□□ 2.36
PNKP-209ENST00000596726 SLIT2O94813 1529 aa29.76■■■□□ 2.36
PNKP-209ENST00000596726 RXRBP28702 533 aa29.76■■■□□ 2.35
PNKP-209ENST00000596726 USP47Q96K76 1375 aa29.76■■■□□ 2.35
PNKP-209ENST00000596726 PUS7Q96PZ0 661 aaKnown RBP29.75■■■□□ 2.35
PNKP-209ENST00000596726 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.75■■■□□ 2.35
PNKP-209ENST00000596726 SSH2Q76I76 1423 aa29.74■■■□□ 2.35
PNKP-209ENST00000596726 ATRNO75882 1429 aa29.73■■■□□ 2.35
PNKP-209ENST00000596726 SLC24A1O60721 1099 aa29.73■■■□□ 2.35
PNKP-209ENST00000596726 TRPC5Q9UL62 973 aaPredicted RBP29.73■■■□□ 2.35
PNKP-209ENST00000596726 CPSF1Q10570 1443 aaKnown RBP29.72■■■□□ 2.35
PNKP-209ENST00000596726 PHRF1Q9P1Y6 1649 aaKnown RBP29.72■■■□□ 2.35
PNKP-209ENST00000596726 ZNF692Q9BU19 519 aaPredicted RBP29.72■■■□□ 2.35
PNKP-209ENST00000596726 CDK12Q9NYV4 1490 aaPredicted RBP29.72■■■□□ 2.35
PNKP-209ENST00000596726 NWD2Q9ULI1 1742 aa29.71■■■□□ 2.35
PNKP-209ENST00000596726 RBM6P78332 1123 aaKnown RBP29.71■■■□□ 2.35
PNKP-209ENST00000596726 ABTB2Q8N961 1025 aa29.71■■■□□ 2.35
PNKP-209ENST00000596726 PLCH1Q4KWH8 1693 aa29.71■■■□□ 2.35
PNKP-209ENST00000596726 FAM83GA6ND36 823 aa29.7■■■□□ 2.35
PNKP-209ENST00000596726 NUTM2GQ5VZR2 741 aa29.69■■■□□ 2.34
PNKP-209ENST00000596726 UNC5CLQ8IV45 518 aa29.68■■■□□ 2.34
PNKP-209ENST00000596726 MON2Q7Z3U7 1717 aa29.67■■■□□ 2.34
PNKP-209ENST00000596726 USP19O94966 1318 aa29.67■■■□□ 2.34
PNKP-209ENST00000596726 CD163L1Q9NR16 1453 aa29.67■■■□□ 2.34
PNKP-209ENST00000596726 COL14A1Q05707 1796 aaKnown RBP29.67■■■□□ 2.34
PNKP-209ENST00000596726 NRKQ7Z2Y5 1582 aa29.66■■■□□ 2.34
PNKP-209ENST00000596726 NLRP13Q86W25 1043 aa29.65■■■□□ 2.34
PNKP-209ENST00000596726 PIK3C2AO00443 1686 aa29.65■■■□□ 2.34
PNKP-209ENST00000596726 TTC21BQ7Z4L5 1316 aa29.64■■■□□ 2.34
PNKP-209ENST00000596726 SLC12A5Q9H2X9 1139 aa29.63■■■□□ 2.33
PNKP-209ENST00000596726 KTN1Q86UP2 1357 aaKnown RBP29.63■■■□□ 2.33
PNKP-209ENST00000596726 NRAPQ86VF7 1730 aa29.62■■■□□ 2.33
PNKP-209ENST00000596726 TMC1Q8TDI8 760 aa29.62■■■□□ 2.33
PNKP-209ENST00000596726 TMF1P82094 1093 aa29.61■■■□□ 2.33
PNKP-209ENST00000596726 TTC21AQ8NDW8 1320 aa29.61■■■□□ 2.33
PNKP-209ENST00000596726 RGS12O14924 1447 aa29.61■■■□□ 2.33
PNKP-209ENST00000596726 GJD4Q96KN9 370 aaPredicted RBP29.6■■■□□ 2.33
PNKP-209ENST00000596726 KIAA0232Q92628 1395 aa29.6■■■□□ 2.33
PNKP-209ENST00000596726 NINLQ9Y2I6 1382 aa29.59■■■□□ 2.33
PNKP-209ENST00000596726 SLIT3O75094 1523 aa29.58■■■□□ 2.33
PNKP-209ENST00000596726 NLRP6P59044 892 aa29.58■■■□□ 2.33
PNKP-209ENST00000596726 PRDM11Q9NQV5 511 aa29.58■■■□□ 2.33
PNKP-209ENST00000596726 GLI3P10071 1580 aa29.57■■■□□ 2.32
PNKP-209ENST00000596726 GCP02774 474 aa29.57■■■□□ 2.32
PNKP-209ENST00000596726 ZC3H6P61129 1189 aaKnown RBP29.57■■■□□ 2.32
PNKP-209ENST00000596726 VPS72Q15906 364 aa29.57■■■□□ 2.32
PNKP-209ENST00000596726 BTG4Q9NY30 223 aa29.57■■■□□ 2.32
PNKP-209ENST00000596726 CPDO75976 1380 aa29.56■■■□□ 2.32
PNKP-209ENST00000596726 HDGFL2Q7Z4V5 671 aaPredicted RBP29.56■■■□□ 2.32
PNKP-209ENST00000596726 TERF2IPQ9NYB0 399 aa29.55■■■□□ 2.32
PNKP-209ENST00000596726 A0A1W2PP64 1363 aa29.54■■■□□ 2.32
PNKP-209ENST00000596726 CHRNA2Q15822 529 aa29.53■■■□□ 2.32
PNKP-209ENST00000596726 EDC4Q6P2E9 1401 aaKnown RBP29.52■■■□□ 2.32
PNKP-209ENST00000596726 USP54Q70EL1 1684 aa29.51■■■□□ 2.31
PNKP-209ENST00000596726 CDCA8Q53HL2 280 aa29.51■■■□□ 2.31
PNKP-209ENST00000596726 LMO7Q8WWI1 1683 aa29.5■■■□□ 2.31
PNKP-209ENST00000596726 USP31Q70CQ4 1352 aa29.5■■■□□ 2.31
PNKP-209ENST00000596726 EIF4G2P78344 907 aaKnown RBP eCLIP29.48■■■□□ 2.31
PNKP-209ENST00000596726 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.48■■■□□ 2.31
PNKP-209ENST00000596726 CAMTA1Q9Y6Y1 1673 aa29.47■■■□□ 2.31
PNKP-209ENST00000596726 HSPA5P11021 654 aaKnown RBP29.46■■■□□ 2.31
PNKP-209ENST00000596726 ANKRD36BQ8N2N9 1353 aa29.46■■■□□ 2.31
PNKP-209ENST00000596726 ONECUT3O60422 494 aaPredicted RBP29.45■■■□□ 2.31
PNKP-209ENST00000596726 NME9Q86XW9 330 aa29.45■■■□□ 2.31
PNKP-209ENST00000596726 KCNH5Q8NCM2 988 aa29.45■■■□□ 2.31
PNKP-209ENST00000596726 ZRANB1Q9UGI0 708 aa29.45■■■□□ 2.31
PNKP-209ENST00000596726 CCDC9Q9Y3X0 531 aaKnown RBP29.45■■■□□ 2.31
PNKP-209ENST00000596726 COL18A1P39060 1754 aa29.44■■■□□ 2.3
PNKP-209ENST00000596726 MYOM1P52179 1685 aa29.44■■■□□ 2.3
PNKP-209ENST00000596726 SPATA31A5Q5VU36 1347 aa29.43■■■□□ 2.3
PNKP-209ENST00000596726 SPATA31A7Q8IWB4 1347 aa29.43■■■□□ 2.3
PNKP-209ENST00000596726 NFAT5O94916 1531 aa29.42■■■□□ 2.3
PNKP-209ENST00000596726 AATKQ6ZMQ8 1374 aa29.41■■■□□ 2.3
PNKP-209ENST00000596726 ARHGEF25Q86VW2 580 aa29.41■■■□□ 2.3
PNKP-209ENST00000596726 BRWD3Q6RI45 1802 aa29.41■■■□□ 2.3
PNKP-209ENST00000596726 UPF1Q92900 1129 aaKnown RBP eCLIP29.39■■■□□ 2.3
PNKP-209ENST00000596726 STRN4Q9NRL3 753 aa29.39■■■□□ 2.3
PNKP-209ENST00000596726 OVOS2A0A0J9YW53 1432 aa29.37■■■□□ 2.29
PNKP-209ENST00000596726 OVOS2Q6IE36 1432 aa29.37■■■□□ 2.29
PNKP-209ENST00000596726 COL5A2P05997 1499 aaPredicted RBP29.37■■■□□ 2.29
PNKP-209ENST00000596726 EVA1CP58658 441 aa29.37■■■□□ 2.29
PNKP-209ENST00000596726 SEPT12Q8IYM1 358 aa29.37■■■□□ 2.29
PNKP-209ENST00000596726 SPATA31A1Q5TZJ5 1347 aa29.37■■■□□ 2.29
PNKP-209ENST00000596726 SOX12O15370 315 aa29.35■■■□□ 2.29
PNKP-209ENST00000596726 RGPD5Q99666 1765 aa29.34■■■□□ 2.29
PNKP-209ENST00000596726 ZBTB7CA1YPR0 619 aa29.34■■■□□ 2.29
PNKP-209ENST00000596726 FAM98CQ17RN3 349 aaKnown RBP29.34■■■□□ 2.29
PNKP-209ENST00000596726 LARP1Q6PKG0 1096 aaKnown RBP29.33■■■□□ 2.29
PNKP-209ENST00000596726 AXIN2Q9Y2T1 843 aa29.33■■■□□ 2.29
PNKP-209ENST00000596726 THSD7AQ9UPZ6 1657 aa29.32■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms