RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 ATAD2Q6PL18 1390 aa16.75■□□□□ 0.27
VRK3-209ENST00000594948 A0A1W2PP64 1363 aa16.75■□□□□ 0.27
VRK3-209ENST00000594948 ATF7IPQ6VMQ6 1270 aa16.75■□□□□ 0.27
VRK3-209ENST00000594948 SMC4Q9NTJ3 1288 aa16.75■□□□□ 0.27
VRK3-209ENST00000594948 NCOA3Q9Y6Q9 1424 aa16.74■□□□□ 0.27
VRK3-209ENST00000594948 KIF16BQ96L93 1317 aa16.74■□□□□ 0.27
VRK3-209ENST00000594948 EXOSC9Q06265 439 aaKnown RBP16.74■□□□□ 0.27
VRK3-209ENST00000594948 TRIM35Q9UPQ4 493 aa16.74■□□□□ 0.27
VRK3-209ENST00000594948 REREQ9P2R6 1566 aa16.73■□□□□ 0.27
VRK3-209ENST00000594948 TRIM27P14373 513 aa16.73■□□□□ 0.27
VRK3-209ENST00000594948 MCM4P33991 863 aa16.73■□□□□ 0.27
VRK3-209ENST00000594948 RSPH6AQ9H0K4 717 aa16.73■□□□□ 0.27
VRK3-209ENST00000594948 PTPRMP28827 1452 aa16.73■□□□□ 0.27
VRK3-209ENST00000594948 ZNF428Q96B54 188 aa16.73■□□□□ 0.27
VRK3-209ENST00000594948 DIP2CQ9Y2E4 1556 aa16.72■□□□□ 0.27
VRK3-209ENST00000594948 PPIP5K1Q6PFW1 1433 aa16.72■□□□□ 0.27
VRK3-209ENST00000594948 PNPLA6Q8IY17 1366 aa16.72■□□□□ 0.27
VRK3-209ENST00000594948 FSD2A1L4K1 749 aa16.72■□□□□ 0.27
VRK3-209ENST00000594948 IPO8O15397 1037 aaKnown RBP16.72■□□□□ 0.27
VRK3-209ENST00000594948 ALDH1L2Q3SY69 923 aa16.72■□□□□ 0.27
VRK3-209ENST00000594948 SSH1Q8WYL5 1049 aa16.72■□□□□ 0.27
VRK3-209ENST00000594948 PREX1Q8TCU6 1659 aa16.71■□□□□ 0.27
VRK3-209ENST00000594948 TMEM131LA2VDJ0 1609 aa16.71■□□□□ 0.27
VRK3-209ENST00000594948 BRPF1P55201 1214 aaPredicted RBP16.71■□□□□ 0.27
VRK3-209ENST00000594948 NEO1Q92859 1461 aa16.71■□□□□ 0.27
VRK3-209ENST00000594948 CD163L1Q9NR16 1453 aa16.71■□□□□ 0.27
VRK3-209ENST00000594948 TSR2Q969E8 191 aaKnown RBP16.7■□□□□ 0.26
VRK3-209ENST00000594948 ZBTB40Q9NUA8 1239 aa16.7■□□□□ 0.26
VRK3-209ENST00000594948 RBM25P49756 843 aaKnown RBP16.7■□□□□ 0.26
VRK3-209ENST00000594948 SNX21Q969T3 373 aa16.7■□□□□ 0.26
VRK3-209ENST00000594948 GGT6Q6P531 493 aa16.69■□□□□ 0.26
VRK3-209ENST00000594948 CABP2Q9NPB3 220 aa16.69■□□□□ 0.26
VRK3-209ENST00000594948 TERF2IPQ9NYB0 399 aa16.69■□□□□ 0.26
VRK3-209ENST00000594948 ISY1Q9ULR0 285 aaKnown RBP16.69■□□□□ 0.26
VRK3-209ENST00000594948 ITPRIPQ8IWB1 547 aa16.68■□□□□ 0.26
VRK3-209ENST00000594948 HSCBQ8IWL3 235 aa16.68■□□□□ 0.26
VRK3-209ENST00000594948 CHMP4BQ9H444 224 aaKnown RBP16.68■□□□□ 0.26
VRK3-209ENST00000594948 RICTORQ6R327 1708 aa16.68■□□□□ 0.26
VRK3-209ENST00000594948 GOLGA6L3A6NEY3 463 aa16.68■□□□□ 0.26
VRK3-209ENST00000594948 NUCB1Q02818 461 aa16.68■□□□□ 0.26
VRK3-209ENST00000594948 NOB1Q9ULX3 412 aaKnown RBP16.68■□□□□ 0.26
VRK3-209ENST00000594948 LRRC7Q96NW7 1537 aa16.68■□□□□ 0.26
VRK3-209ENST00000594948 DDX11L8A8MPP1 907 aa16.67■□□□□ 0.26
VRK3-209ENST00000594948 MFAP1P55081 439 aaKnown RBP16.67■□□□□ 0.26
VRK3-209ENST00000594948 U2SURPO15042 1029 aaKnown RBP16.66■□□□□ 0.26
VRK3-209ENST00000594948 TMEM57Q8N5G2 664 aa16.66■□□□□ 0.26
VRK3-209ENST00000594948 ZNF692Q9BU19 519 aaPredicted RBP16.66■□□□□ 0.26
VRK3-209ENST00000594948 SLC52A1Q9NWF4 448 aa16.66■□□□□ 0.26
VRK3-209ENST00000594948 CIZ1Q9ULV3 898 aaPredicted RBP16.66■□□□□ 0.26
VRK3-209ENST00000594948 PIK3R4Q99570 1358 aa16.66■□□□□ 0.26
VRK3-209ENST00000594948 DIAPH1O60610 1272 aaKnown RBP16.66■□□□□ 0.26
VRK3-209ENST00000594948 DDIT3P35638 169 aa16.66■□□□□ 0.26
VRK3-209ENST00000594948 FAM135BQ49AJ0 1406 aa16.65■□□□□ 0.26
VRK3-209ENST00000594948 FYB1O15117 783 aa16.65■□□□□ 0.26
VRK3-209ENST00000594948 RIPK4P57078 832 aa16.65■□□□□ 0.26
VRK3-209ENST00000594948 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.65■□□□□ 0.26
VRK3-209ENST00000594948 FCHSD2O94868 740 aa16.64■□□□□ 0.25
VRK3-209ENST00000594948 PRKCSHP14314 528 aaPredicted RBP16.64■□□□□ 0.25
VRK3-209ENST00000594948 PTCH1Q13635 1447 aa16.64■□□□□ 0.25
VRK3-209ENST00000594948 DLC1Q96QB1 1528 aa16.64■□□□□ 0.25
VRK3-209ENST00000594948 TRAK2O60296 914 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 PTMSP20962 102 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 ARHGAP45Q92619 1136 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 GGNBP2Q9H3C7 697 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 MAP2P11137 1827 aaKnown RBP16.63■□□□□ 0.25
VRK3-209ENST00000594948 YTHDC2Q9H6S0 1430 aaKnown RBP16.63■□□□□ 0.25
VRK3-209ENST00000594948 ARHGEF40Q8TER5 1519 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 NPM1P06748 294 aaKnown RBP eCLIP16.63■□□□□ 0.25
VRK3-209ENST00000594948 XRCC6P12956 609 aaKnown RBP eCLIP16.63■□□□□ 0.25
VRK3-209ENST00000594948 SRPK2P78362 688 aaKnown RBP16.63■□□□□ 0.25
VRK3-209ENST00000594948 BMP2KLQ5H9B9 411 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 ATP7BP35670 1465 aa16.63■□□□□ 0.25
VRK3-209ENST00000594948 MRE11P49959 708 aa16.62■□□□□ 0.25
VRK3-209ENST00000594948 HDGFL2Q7Z4V5 671 aaPredicted RBP16.62■□□□□ 0.25
VRK3-209ENST00000594948 CHD1LQ86WJ1 897 aa16.62■□□□□ 0.25
VRK3-209ENST00000594948 GCC1Q96CN9 775 aa16.62■□□□□ 0.25
VRK3-209ENST00000594948 ALKQ9UM73 1620 aa16.61■□□□□ 0.25
VRK3-209ENST00000594948 EIF5BO60841 1220 aaKnown RBP16.61■□□□□ 0.25
VRK3-209ENST00000594948 CALD1Q05682 793 aaKnown RBP16.61■□□□□ 0.25
VRK3-209ENST00000594948 DLG5Q8TDM6 1919 aa16.6■□□□□ 0.25
VRK3-209ENST00000594948 IDI1Q13907 227 aa16.6■□□□□ 0.25
VRK3-209ENST00000594948 RRAGDQ9NQL2 400 aaPredicted RBP16.6■□□□□ 0.25
VRK3-209ENST00000594948 SETD1AO15047 1707 aaKnown RBP16.58■□□□□ 0.24
VRK3-209ENST00000594948 SPRYD3Q8NCJ5 442 aa16.57■□□□□ 0.24
VRK3-209ENST00000594948 KIF24Q5T7B8 1368 aa16.57■□□□□ 0.24
VRK3-209ENST00000594948 ZBTB7BO15156 539 aaPredicted RBP16.56■□□□□ 0.24
VRK3-209ENST00000594948 SKOR2Q2VWA4 1001 aaPredicted RBP16.56■□□□□ 0.24
VRK3-209ENST00000594948 CFAP44Q96MT7 982 aa16.56■□□□□ 0.24
VRK3-209ENST00000594948 GBP4Q96PP9 640 aa16.56■□□□□ 0.24
VRK3-209ENST00000594948 NUTM2DQ5VT03 806 aaPredicted RBP16.56■□□□□ 0.24
VRK3-209ENST00000594948 MRPL50Q8N5N7 158 aaKnown RBP16.56■□□□□ 0.24
VRK3-209ENST00000594948 CDK12Q9NYV4 1490 aaPredicted RBP16.55■□□□□ 0.24
VRK3-209ENST00000594948 ABCC4O15439 1325 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 CLCN1P35523 988 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 RAB3GAP1Q15042 981 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 NFE2L2Q16236 605 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 PRAM1Q96QH2 718 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 LNPKQ9C0E8 428 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 YEATS2Q9ULM3 1422 aa16.55■□□□□ 0.24
VRK3-209ENST00000594948 MINK1Q8N4C8 1332 aaPredicted RBP16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms