RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 DCCP43146 1447 aa20.43■□□□□ 0.86
VRK3-207ENST00000594092 PHF8Q9UPP1 1060 aa20.43■□□□□ 0.86
VRK3-207ENST00000594092 LRRC7Q96NW7 1537 aa20.42■□□□□ 0.86
VRK3-207ENST00000594092 XIRP1Q702N8 1843 aaKnown RBP20.42■□□□□ 0.86
VRK3-207ENST00000594092 ESCO1Q5FWF5 840 aa20.41■□□□□ 0.86
VRK3-207ENST00000594092 ZRANB1Q9UGI0 708 aa20.4■□□□□ 0.86
VRK3-207ENST00000594092 C1orf167Q5SNV9 1468 aa20.39■□□□□ 0.86
VRK3-207ENST00000594092 ATF3P18847 181 aa20.39■□□□□ 0.86
VRK3-207ENST00000594092 MSH6P52701 1360 aa20.38■□□□□ 0.85
VRK3-207ENST00000594092 ORAI2Q96SN7 254 aa20.38■□□□□ 0.85
VRK3-207ENST00000594092 MST1RQ04912 1400 aa20.38■□□□□ 0.85
VRK3-207ENST00000594092 TTC21AQ8NDW8 1320 aa20.38■□□□□ 0.85
VRK3-207ENST00000594092 MTHFSP49914 203 aa20.37■□□□□ 0.85
VRK3-207ENST00000594092 HNRNPUQ00839 825 aaKnown RBP eCLIP20.37■□□□□ 0.85
VRK3-207ENST00000594092 COG3Q96JB2 828 aa20.37■□□□□ 0.85
VRK3-207ENST00000594092 SCAF1Q9H7N4 1312 aaKnown RBP20.36■□□□□ 0.85
VRK3-207ENST00000594092 CADPS2Q86UW7 1296 aa20.36■□□□□ 0.85
VRK3-207ENST00000594092 OVOS2A0A0J9YW53 1432 aa20.34■□□□□ 0.85
VRK3-207ENST00000594092 OVOS2Q6IE36 1432 aa20.34■□□□□ 0.85
VRK3-207ENST00000594092 PIK3C2AO00443 1686 aa20.32■□□□□ 0.84
VRK3-207ENST00000594092 KIF1AQ12756 1690 aa20.32■□□□□ 0.84
VRK3-207ENST00000594092 INSRP06213 1382 aa20.32■□□□□ 0.84
VRK3-207ENST00000594092 FBLN1P23142 703 aa20.31■□□□□ 0.84
VRK3-207ENST00000594092 PSME1Q06323 249 aa20.31■□□□□ 0.84
VRK3-207ENST00000594092 WDR43Q15061 677 aaKnown RBP eCLIP20.31■□□□□ 0.84
VRK3-207ENST00000594092 AATKQ6ZMQ8 1374 aa20.31■□□□□ 0.84
VRK3-207ENST00000594092 USP31Q70CQ4 1352 aa20.31■□□□□ 0.84
VRK3-207ENST00000594092 CFAP53Q96M91 514 aa20.31■□□□□ 0.84
VRK3-207ENST00000594092 ADAMTS8Q9UP79 889 aa20.31■□□□□ 0.84
VRK3-207ENST00000594092 FOXO3O43524 673 aa20.3■□□□□ 0.84
VRK3-207ENST00000594092 POLKQ9UBT6 870 aa20.3■□□□□ 0.84
VRK3-207ENST00000594092 SHPRHQ149N8 1683 aa20.29■□□□□ 0.84
VRK3-207ENST00000594092 PAK3O75914 559 aaPredicted RBP20.28■□□□□ 0.84
VRK3-207ENST00000594092 MAP2P11137 1827 aaKnown RBP20.28■□□□□ 0.84
VRK3-207ENST00000594092 BLMP54132 1417 aaPredicted RBP20.28■□□□□ 0.84
VRK3-207ENST00000594092 PNPLA6Q8IY17 1366 aa20.27■□□□□ 0.84
VRK3-207ENST00000594092 COL3A1P02461 1466 aaPredicted RBP20.27■□□□□ 0.83
VRK3-207ENST00000594092 SMG6Q86US8 1419 aaKnown RBP20.27■□□□□ 0.83
VRK3-207ENST00000594092 USP54Q70EL1 1684 aa20.26■□□□□ 0.83
VRK3-207ENST00000594092 NLRP6P59044 892 aa20.26■□□□□ 0.83
VRK3-207ENST00000594092 ABTB2Q8N961 1025 aa20.26■□□□□ 0.83
VRK3-207ENST00000594092 EMILIN1Q9Y6C2 1016 aa20.26■□□□□ 0.83
VRK3-207ENST00000594092 ZBED9Q6R2W3 1325 aa20.25■□□□□ 0.83
VRK3-207ENST00000594092 MARF1Q9Y4F3 1742 aaKnown RBP20.25■□□□□ 0.83
VRK3-207ENST00000594092 XPCQ01831 940 aaPredicted RBP20.25■□□□□ 0.83
VRK3-207ENST00000594092 RRS1Q15050 365 aaKnown RBP20.25■□□□□ 0.83
VRK3-207ENST00000594092 NUTM2GQ5VZR2 741 aa20.24■□□□□ 0.83
VRK3-207ENST00000594092 KRT28Q7Z3Y7 464 aa20.24■□□□□ 0.83
VRK3-207ENST00000594092 LTBP4Q8N2S1 1624 aa20.24■□□□□ 0.83
VRK3-207ENST00000594092 TRPM3Q9HCF6 1732 aaPredicted RBP20.24■□□□□ 0.83
VRK3-207ENST00000594092 PPM1GO15355 546 aaPredicted RBP20.23■□□□□ 0.83
VRK3-207ENST00000594092 SLAIN2Q9P270 581 aa20.23■□□□□ 0.83
VRK3-207ENST00000594092 CDK12Q9NYV4 1490 aaPredicted RBP20.22■□□□□ 0.83
VRK3-207ENST00000594092 SENP3-EIF4A1A0A087X0R7 540 aa20.21■□□□□ 0.83
VRK3-207ENST00000594092 BRINP3Q76B58 766 aa20.21■□□□□ 0.83
VRK3-207ENST00000594092 NPHP3Q7Z494 1330 aa20.2■□□□□ 0.82
VRK3-207ENST00000594092 SOX12O15370 315 aa20.2■□□□□ 0.82
VRK3-207ENST00000594092 DIAPH1O60610 1272 aaKnown RBP20.2■□□□□ 0.82
VRK3-207ENST00000594092 DDX17Q92841 729 aaKnown RBP20.2■□□□□ 0.82
VRK3-207ENST00000594092 NUDCQ9Y266 331 aa20.19■□□□□ 0.82
VRK3-207ENST00000594092 AEBP2Q6ZN18 517 aaPredicted RBP20.18■□□□□ 0.82
VRK3-207ENST00000594092 CCDC146Q8IYE0 955 aa20.17■□□□□ 0.82
VRK3-207ENST00000594092 MAP3K19Q56UN5 1328 aa20.17■□□□□ 0.82
VRK3-207ENST00000594092 SBNO1A3KN83 1393 aa20.17■□□□□ 0.82
VRK3-207ENST00000594092 PEAK1Q9H792 1746 aa20.16■□□□□ 0.82
VRK3-207ENST00000594092 PXDNQ92626 1479 aa20.16■□□□□ 0.82
VRK3-207ENST00000594092 U2AF1L5P0DN76 240 aaPredicted RBP20.16■□□□□ 0.82
VRK3-207ENST00000594092 U2AF1Q01081 240 aaKnown RBP eCLIP20.16■□□□□ 0.82
VRK3-207ENST00000594092 GTF3C3Q9Y5Q9 886 aa20.16■□□□□ 0.82
VRK3-207ENST00000594092 ALS2Q96Q42 1657 aa20.16■□□□□ 0.82
VRK3-207ENST00000594092 U2SURPO15042 1029 aaKnown RBP20.15■□□□□ 0.82
VRK3-207ENST00000594092 LMOD2Q6P5Q4 547 aa20.15■□□□□ 0.82
VRK3-207ENST00000594092 IL13P35225 146 aa20.14■□□□□ 0.81
VRK3-207ENST00000594092 NFAT5O94916 1531 aa20.13■□□□□ 0.81
VRK3-207ENST00000594092 USP19O94966 1318 aa20.13■□□□□ 0.81
VRK3-207ENST00000594092 SALL2Q9Y467 1007 aaPredicted RBP20.13■□□□□ 0.81
VRK3-207ENST00000594092 SLIT3O75094 1523 aa20.12■□□□□ 0.81
VRK3-207ENST00000594092 FLT4P35916 1363 aa20.12■□□□□ 0.81
VRK3-207ENST00000594092 TNS3Q68CZ2 1445 aa20.12■□□□□ 0.81
VRK3-207ENST00000594092 APAF1O14727 1248 aa20.11■□□□□ 0.81
VRK3-207ENST00000594092 KCNH5Q8NCM2 988 aa20.11■□□□□ 0.81
VRK3-207ENST00000594092 RUNDC1Q96C34 613 aa20.11■□□□□ 0.81
VRK3-207ENST00000594092 HSP90AB2PQ58FF8 381 aa20.11■□□□□ 0.81
VRK3-207ENST00000594092 KIF24Q5T7B8 1368 aa20.1■□□□□ 0.81
VRK3-207ENST00000594092 SPATA31A3Q5VYP0 1347 aa20.1■□□□□ 0.81
VRK3-207ENST00000594092 AMPHP49418 695 aa20.1■□□□□ 0.81
VRK3-207ENST00000594092 EIF4A2Q14240 407 aaKnown RBP20.1■□□□□ 0.81
VRK3-207ENST00000594092 SOS2Q07890 1332 aaPredicted RBP20.09■□□□□ 0.81
VRK3-207ENST00000594092 GCP02774 474 aa20.09■□□□□ 0.81
VRK3-207ENST00000594092 MED1Q15648 1581 aaPredicted RBP20.08■□□□□ 0.8
VRK3-207ENST00000594092 IQSEC2Q5JU85 1478 aa20.07■□□□□ 0.8
VRK3-207ENST00000594092 NHSL1Q5SYE7 1610 aa20.07■□□□□ 0.8
VRK3-207ENST00000594092 LTN1O94822 1766 aa20.07■□□□□ 0.8
VRK3-207ENST00000594092 HOXC9P31274 260 aa20.07■□□□□ 0.8
VRK3-207ENST00000594092 PLEKHF1Q96S99 279 aa20.07■□□□□ 0.8
VRK3-207ENST00000594092 RTL1A6NKG5 1358 aa20.07■□□□□ 0.8
VRK3-207ENST00000594092 PLEKHG5O94827 1062 aa20.06■□□□□ 0.8
VRK3-207ENST00000594092 FCHSD2O94868 740 aa20.06■□□□□ 0.8
VRK3-207ENST00000594092 ARHGEF10O15013 1369 aa20.06■□□□□ 0.8
VRK3-207ENST00000594092 TCP11L2Q8N4U5 519 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms