RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 SF3B2Q13435 895 aaKnown RBP21.58■■□□□ 1.05
PNKP-202ENST00000593706 PRR36Q9H6K5 1346 aa21.57■■□□□ 1.04
PNKP-202ENST00000593706 FAM83GA6ND36 823 aa21.55■■□□□ 1.04
PNKP-202ENST00000593706 WASLO00401 505 aaPredicted RBP21.55■■□□□ 1.04
PNKP-202ENST00000593706 KRT27Q7Z3Y8 459 aa21.55■■□□□ 1.04
PNKP-202ENST00000593706 NGDNQ8NEJ9 315 aaKnown RBP21.55■■□□□ 1.04
PNKP-202ENST00000593706 ATP7BP35670 1465 aa21.55■■□□□ 1.04
PNKP-202ENST00000593706 BTG4Q9NY30 223 aa21.54■■□□□ 1.04
PNKP-202ENST00000593706 PAK3O75914 559 aaPredicted RBP21.53■■□□□ 1.04
PNKP-202ENST00000593706 DEFB132Q7Z7B7 95 aa21.53■■□□□ 1.04
PNKP-202ENST00000593706 STAC3Q96MF2 364 aa21.53■■□□□ 1.04
PNKP-202ENST00000593706 THSD7AQ9UPZ6 1657 aa21.53■■□□□ 1.04
PNKP-202ENST00000593706 TNS1Q9HBL0 1735 aaKnown RBP21.52■■□□□ 1.03
PNKP-202ENST00000593706 ONECUT3O60422 494 aaPredicted RBP21.51■■□□□ 1.03
PNKP-202ENST00000593706 FAM98CQ17RN3 349 aaKnown RBP21.51■■□□□ 1.03
PNKP-202ENST00000593706 LRP5O75197 1615 aa21.5■■□□□ 1.03
PNKP-202ENST00000593706 HRCP23327 699 aa21.49■■□□□ 1.03
PNKP-202ENST00000593706 QRICH2Q9H0J4 1663 aa21.47■■□□□ 1.03
PNKP-202ENST00000593706 PRDM11Q9NQV5 511 aa21.47■■□□□ 1.03
PNKP-202ENST00000593706 NUDT16Q96DE0 195 aaKnown RBP21.46■■□□□ 1.03
PNKP-202ENST00000593706 NRKQ7Z2Y5 1582 aa21.45■■□□□ 1.02
PNKP-202ENST00000593706 BAG6P46379 1132 aa21.45■■□□□ 1.02
PNKP-202ENST00000593706 SPATA31A5Q5VU36 1347 aa21.44■■□□□ 1.02
PNKP-202ENST00000593706 SPATA31A7Q8IWB4 1347 aa21.44■■□□□ 1.02
PNKP-202ENST00000593706 KIAA0232Q92628 1395 aa21.43■■□□□ 1.02
PNKP-202ENST00000593706 CDK19Q9BWU1 502 aa21.41■■□□□ 1.02
PNKP-202ENST00000593706 POLR3AO14802 1390 aaPredicted RBP21.39■■□□□ 1.02
PNKP-202ENST00000593706 CHRNA2Q15822 529 aa21.39■■□□□ 1.01
PNKP-202ENST00000593706 FAM182BQ5T319 152 aa21.39■■□□□ 1.01
PNKP-202ENST00000593706 NUTM2GQ5VZR2 741 aa21.39■■□□□ 1.01
PNKP-202ENST00000593706 LMO7Q8WWI1 1683 aa21.39■■□□□ 1.01
PNKP-202ENST00000593706 ACEP12821 1306 aa21.38■■□□□ 1.01
PNKP-202ENST00000593706 STRN4Q9NRL3 753 aa21.38■■□□□ 1.01
PNKP-202ENST00000593706 ZC3H6P61129 1189 aaKnown RBP21.37■■□□□ 1.01
PNKP-202ENST00000593706 SPATA31A1Q5TZJ5 1347 aa21.36■■□□□ 1.01
PNKP-202ENST00000593706 CCDC61Q9Y6R9 512 aa21.36■■□□□ 1.01
PNKP-202ENST00000593706 PSDA5PKW4 1024 aaPredicted RBP21.35■■□□□ 1.01
PNKP-202ENST00000593706 RREB1Q92766 1687 aa21.34■■□□□ 1.01
PNKP-202ENST00000593706 EN1Q05925 392 aaPredicted RBP21.34■■□□□ 1.01
PNKP-202ENST00000593706 PPIP5K1Q6PFW1 1433 aa21.34■■□□□ 1.01
PNKP-202ENST00000593706 SSH2Q76I76 1423 aa21.34■■□□□ 1.01
PNKP-202ENST00000593706 PARP4Q9UKK3 1724 aaKnown RBP21.34■■□□□ 1.01
PNKP-202ENST00000593706 DISP2A7MBM2 1401 aa21.33■■□□□ 1.01
PNKP-202ENST00000593706 NBPF8Q3BBV2 869 aa21.33■■□□□ 1.01
PNKP-202ENST00000593706 CAMTA1Q9Y6Y1 1673 aa21.33■■□□□ 1
PNKP-202ENST00000593706 WNK3Q9BYP7 1800 aa21.32■■□□□ 1
PNKP-202ENST00000593706 SRPK2P78362 688 aaKnown RBP21.32■■□□□ 1
PNKP-202ENST00000593706 ABTB2Q8N961 1025 aa21.32■■□□□ 1
PNKP-202ENST00000593706 USP35Q9P2H5 1018 aa21.32■■□□□ 1
PNKP-202ENST00000593706 TRPM1Q7Z4N2 1603 aa21.32■■□□□ 1
PNKP-202ENST00000593706 NUP188Q5SRE5 1749 aa21.32■■□□□ 1
PNKP-202ENST00000593706 PLEKHG3A1L390 1219 aa21.31■■□□□ 1
PNKP-202ENST00000593706 EVA1CP58658 441 aa21.31■■□□□ 1
PNKP-202ENST00000593706 NBPF1Q3BBV0 1214 aa21.31■■□□□ 1
PNKP-202ENST00000593706 CENPJQ9HC77 1338 aaPredicted RBP21.3■■□□□ 1
PNKP-202ENST00000593706 AKAP12Q02952 1782 aa21.29■■□□□ 1
PNKP-202ENST00000593706 PIK3C2AO00443 1686 aa21.29■■□□□ 1
PNKP-202ENST00000593706 USP19O94966 1318 aa21.29■■□□□ 1
PNKP-202ENST00000593706 RGPD5Q99666 1765 aa21.28■■□□□ 1
PNKP-202ENST00000593706 CPDO75976 1380 aa21.28■■□□□ 1
PNKP-202ENST00000593706 FAM196AQ6ZSG2 479 aa21.28■■□□□ 1
PNKP-202ENST00000593706 SBF2Q86WG5 1849 aa21.27■■□□□ 1
PNKP-202ENST00000593706 TRIM37O94972 964 aa21.27■■□□□ 1
PNKP-202ENST00000593706 R3HDM1Q15032 1099 aaKnown RBP21.26■□□□□ 0.99
PNKP-202ENST00000593706 CABP2Q9NPB3 220 aa21.26■□□□□ 0.99
PNKP-202ENST00000593706 COL5A2P05997 1499 aaPredicted RBP21.26■□□□□ 0.99
PNKP-202ENST00000593706 LRRC37A3O60309 1634 aa21.26■□□□□ 0.99
PNKP-202ENST00000593706 PDE3BQ13370 1112 aa21.25■□□□□ 0.99
PNKP-202ENST00000593706 EZH2Q15910 746 aaKnown RBP21.25■□□□□ 0.99
PNKP-202ENST00000593706 NLRP13Q86W25 1043 aa21.25■□□□□ 0.99
PNKP-202ENST00000593706 LARP1Q6PKG0 1096 aaKnown RBP21.24■□□□□ 0.99
PNKP-202ENST00000593706 BARGINQ6ZT62 677 aa21.24■□□□□ 0.99
PNKP-202ENST00000593706 SLIT3O75094 1523 aa21.24■□□□□ 0.99
PNKP-202ENST00000593706 BRD4O60885 1362 aaPredicted RBP21.23■□□□□ 0.99
PNKP-202ENST00000593706 USP6P35125 1406 aa21.23■□□□□ 0.99
PNKP-202ENST00000593706 ZBTB7CA1YPR0 619 aa21.23■□□□□ 0.99
PNKP-202ENST00000593706 TCP11L2Q8N4U5 519 aa21.23■□□□□ 0.99
PNKP-202ENST00000593706 PARD3Q8TEW0 1356 aa21.23■□□□□ 0.99
PNKP-202ENST00000593706 APBA3O96018 575 aa21.22■□□□□ 0.99
PNKP-202ENST00000593706 RGPD3A6NKT7 1758 aaPredicted RBP21.22■□□□□ 0.99
PNKP-202ENST00000593706 COL18A1P39060 1754 aa21.22■□□□□ 0.99
PNKP-202ENST00000593706 RGPD4Q7Z3J3 1758 aa21.22■□□□□ 0.99
PNKP-202ENST00000593706 GCP02774 474 aa21.21■□□□□ 0.99
PNKP-202ENST00000593706 PEAK1Q9H792 1746 aa21.21■□□□□ 0.99
PNKP-202ENST00000593706 CRB1P82279 1406 aa21.21■□□□□ 0.99
PNKP-202ENST00000593706 CAMKK2Q96RR4 588 aa21.19■□□□□ 0.98
PNKP-202ENST00000593706 THRAP3Q9Y2W1 955 aaKnown RBP21.19■□□□□ 0.98
PNKP-202ENST00000593706 MON2Q7Z3U7 1717 aa21.18■□□□□ 0.98
PNKP-202ENST00000593706 NLRP6P59044 892 aa21.17■□□□□ 0.98
PNKP-202ENST00000593706 CABP1Q9NZU7 370 aa21.17■□□□□ 0.98
PNKP-202ENST00000593706 EVC2Q86UK5 1308 aa21.16■□□□□ 0.98
PNKP-202ENST00000593706 L3MBTL2Q969R5 705 aa21.16■□□□□ 0.98
PNKP-202ENST00000593706 OVOS2A0A0G2JMS6 1433 aa21.15■□□□□ 0.98
PNKP-202ENST00000593706 OVOS2A0A0J9YW53 1432 aa21.15■□□□□ 0.98
PNKP-202ENST00000593706 OVOS2Q6IE36 1432 aa21.15■□□□□ 0.98
PNKP-202ENST00000593706 ROCK2O75116 1388 aaKnown RBP21.15■□□□□ 0.98
PNKP-202ENST00000593706 LTN1O94822 1766 aa21.15■□□□□ 0.98
PNKP-202ENST00000593706 AATKQ6ZMQ8 1374 aa21.14■□□□□ 0.98
PNKP-202ENST00000593706 CPSF1Q10570 1443 aaKnown RBP21.12■□□□□ 0.97
PNKP-202ENST00000593706 TOM1L2Q6ZVM7 507 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms