RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 PHRF1Q9P1Y6 1649 aaKnown RBP22.28■■□□□ 1.16
LIG3-215ENST00000592690 PAK3O75914 559 aaPredicted RBP22.27■■□□□ 1.16
LIG3-215ENST00000592690 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.27■■□□□ 1.16
LIG3-215ENST00000592690 CABP1Q9NZU7 370 aa22.25■■□□□ 1.15
LIG3-215ENST00000592690 HAP1P54257 671 aaPredicted RBP22.24■■□□□ 1.15
LIG3-215ENST00000592690 NWD2Q9ULI1 1742 aa22.23■■□□□ 1.15
LIG3-215ENST00000592690 FNBP4Q8N3X1 1017 aaPredicted RBP22.23■■□□□ 1.15
LIG3-215ENST00000592690 ATAD2Q6PL18 1390 aa22.23■■□□□ 1.15
LIG3-215ENST00000592690 MON2Q7Z3U7 1717 aa22.23■■□□□ 1.15
LIG3-215ENST00000592690 NRKQ7Z2Y5 1582 aa22.22■■□□□ 1.15
LIG3-215ENST00000592690 USP21Q9UK80 565 aa22.22■■□□□ 1.15
LIG3-215ENST00000592690 USP47Q96K76 1375 aa22.22■■□□□ 1.15
LIG3-215ENST00000592690 USP6P35125 1406 aa22.22■■□□□ 1.15
LIG3-215ENST00000592690 BCL9LQ86UU0 1499 aa22.22■■□□□ 1.15
LIG3-215ENST00000592690 SLIT2O94813 1529 aa22.21■■□□□ 1.15
LIG3-215ENST00000592690 ST20-MTHFSA0A0A6YYL1 179 aa22.21■■□□□ 1.15
LIG3-215ENST00000592690 TESK2Q96S53 571 aa22.2■■□□□ 1.14
LIG3-215ENST00000592690 QTRT2Q9H974 415 aaKnown RBP22.2■■□□□ 1.14
LIG3-215ENST00000592690 PIK3C2AO00443 1686 aa22.2■■□□□ 1.14
LIG3-215ENST00000592690 NRAPQ86VF7 1730 aa22.2■■□□□ 1.14
LIG3-215ENST00000592690 COL14A1Q05707 1796 aaKnown RBP22.2■■□□□ 1.14
LIG3-215ENST00000592690 NUTM2GQ5VZR2 741 aa22.19■■□□□ 1.14
LIG3-215ENST00000592690 ATRNO75882 1429 aa22.19■■□□□ 1.14
LIG3-215ENST00000592690 RXRBP28702 533 aa22.18■■□□□ 1.14
LIG3-215ENST00000592690 CDK12Q9NYV4 1490 aaPredicted RBP22.16■■□□□ 1.14
LIG3-215ENST00000592690 SSH2Q76I76 1423 aa22.16■■□□□ 1.14
LIG3-215ENST00000592690 CD163L1Q9NR16 1453 aa22.15■■□□□ 1.14
LIG3-215ENST00000592690 CPSF1Q10570 1443 aaKnown RBP22.15■■□□□ 1.14
LIG3-215ENST00000592690 BRD4O60885 1362 aaPredicted RBP22.15■■□□□ 1.14
LIG3-215ENST00000592690 ABTB2Q8N961 1025 aa22.15■■□□□ 1.14
LIG3-215ENST00000592690 TRPC5Q9UL62 973 aaPredicted RBP22.15■■□□□ 1.14
LIG3-215ENST00000592690 RBM6P78332 1123 aaKnown RBP22.14■■□□□ 1.13
LIG3-215ENST00000592690 RGS12O14924 1447 aa22.14■■□□□ 1.13
LIG3-215ENST00000592690 FAM83GA6ND36 823 aa22.13■■□□□ 1.13
LIG3-215ENST00000592690 GLI3P10071 1580 aa22.12■■□□□ 1.13
LIG3-215ENST00000592690 UNC5CLQ8IV45 518 aa22.12■■□□□ 1.13
LIG3-215ENST00000592690 USP19O94966 1318 aa22.11■■□□□ 1.13
LIG3-215ENST00000592690 KTN1Q86UP2 1357 aaKnown RBP22.11■■□□□ 1.13
LIG3-215ENST00000592690 TMC1Q8TDI8 760 aa22.1■■□□□ 1.13
LIG3-215ENST00000592690 ZNF692Q9BU19 519 aaPredicted RBP22.1■■□□□ 1.13
LIG3-215ENST00000592690 SLIT3O75094 1523 aa22.1■■□□□ 1.13
LIG3-215ENST00000592690 KIAA0232Q92628 1395 aa22.1■■□□□ 1.13
LIG3-215ENST00000592690 PUS7Q96PZ0 661 aaKnown RBP22.09■■□□□ 1.13
LIG3-215ENST00000592690 SLC12A5Q9H2X9 1139 aa22.09■■□□□ 1.13
LIG3-215ENST00000592690 TTC21BQ7Z4L5 1316 aa22.08■■□□□ 1.13
LIG3-215ENST00000592690 USP54Q70EL1 1684 aa22.08■■□□□ 1.13
LIG3-215ENST00000592690 NLRP13Q86W25 1043 aa22.08■■□□□ 1.13
LIG3-215ENST00000592690 PRDM11Q9NQV5 511 aa22.08■■□□□ 1.13
LIG3-215ENST00000592690 MYOM1P52179 1685 aa22.07■■□□□ 1.12
LIG3-215ENST00000592690 LMO7Q8WWI1 1683 aa22.07■■□□□ 1.12
LIG3-215ENST00000592690 BRWD3Q6RI45 1802 aa22.06■■□□□ 1.12
LIG3-215ENST00000592690 NLRP6P59044 892 aa22.06■■□□□ 1.12
LIG3-215ENST00000592690 ZC3H6P61129 1189 aaKnown RBP22.06■■□□□ 1.12
LIG3-215ENST00000592690 GJD4Q96KN9 370 aaPredicted RBP22.06■■□□□ 1.12
LIG3-215ENST00000592690 BTG4Q9NY30 223 aa22.06■■□□□ 1.12
LIG3-215ENST00000592690 A0A1W2PP64 1363 aa22.06■■□□□ 1.12
LIG3-215ENST00000592690 SLC24A1O60721 1099 aa22.05■■□□□ 1.12
LIG3-215ENST00000592690 TMF1P82094 1093 aa22.05■■□□□ 1.12
LIG3-215ENST00000592690 CHRNA2Q15822 529 aa22.05■■□□□ 1.12
LIG3-215ENST00000592690 TTC21AQ8NDW8 1320 aa22.05■■□□□ 1.12
LIG3-215ENST00000592690 CPDO75976 1380 aa22.03■■□□□ 1.12
LIG3-215ENST00000592690 NINLQ9Y2I6 1382 aa22.03■■□□□ 1.12
LIG3-215ENST00000592690 VPS72Q15906 364 aa22.03■■□□□ 1.12
LIG3-215ENST00000592690 RGPD5Q99666 1765 aa22.02■■□□□ 1.12
LIG3-215ENST00000592690 GCP02774 474 aa22.02■■□□□ 1.12
LIG3-215ENST00000592690 HDGFL2Q7Z4V5 671 aaPredicted RBP22.02■■□□□ 1.12
LIG3-215ENST00000592690 EDC4Q6P2E9 1401 aaKnown RBP22.02■■□□□ 1.12
LIG3-215ENST00000592690 COL18A1P39060 1754 aa22.02■■□□□ 1.11
LIG3-215ENST00000592690 CAMTA1Q9Y6Y1 1673 aa22.01■■□□□ 1.11
LIG3-215ENST00000592690 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.01■■□□□ 1.11
LIG3-215ENST00000592690 TERF2IPQ9NYB0 399 aa22.01■■□□□ 1.11
LIG3-215ENST00000592690 NFAT5O94916 1531 aa22■■□□□ 1.11
LIG3-215ENST00000592690 LTN1O94822 1766 aa21.99■■□□□ 1.11
LIG3-215ENST00000592690 ZRANB1Q9UGI0 708 aa21.99■■□□□ 1.11
LIG3-215ENST00000592690 CCDC9Q9Y3X0 531 aaKnown RBP21.99■■□□□ 1.11
LIG3-215ENST00000592690 NME9Q86XW9 330 aa21.98■■□□□ 1.11
LIG3-215ENST00000592690 USP31Q70CQ4 1352 aa21.97■■□□□ 1.11
LIG3-215ENST00000592690 ANKRD36BQ8N2N9 1353 aa21.97■■□□□ 1.11
LIG3-215ENST00000592690 HSPA5P11021 654 aaKnown RBP21.96■■□□□ 1.11
LIG3-215ENST00000592690 EIF4G2P78344 907 aaKnown RBP eCLIP21.96■■□□□ 1.11
LIG3-215ENST00000592690 KIF20BQ96Q89 1820 aa21.96■■□□□ 1.11
LIG3-215ENST00000592690 ZBTB7CA1YPR0 619 aa21.95■■□□□ 1.1
LIG3-215ENST00000592690 SOX12O15370 315 aa21.95■■□□□ 1.1
LIG3-215ENST00000592690 CDCA8Q53HL2 280 aa21.95■■□□□ 1.1
LIG3-215ENST00000592690 STRN4Q9NRL3 753 aa21.95■■□□□ 1.1
LIG3-215ENST00000592690 SPATA31A5Q5VU36 1347 aa21.94■■□□□ 1.1
LIG3-215ENST00000592690 SPATA31A7Q8IWB4 1347 aa21.94■■□□□ 1.1
LIG3-215ENST00000592690 THSD7AQ9UPZ6 1657 aa21.94■■□□□ 1.1
LIG3-215ENST00000592690 OVOS2A0A0J9YW53 1432 aa21.93■■□□□ 1.1
LIG3-215ENST00000592690 COL5A2P05997 1499 aaPredicted RBP21.93■■□□□ 1.1
LIG3-215ENST00000592690 OVOS2Q6IE36 1432 aa21.93■■□□□ 1.1
LIG3-215ENST00000592690 AATKQ6ZMQ8 1374 aa21.92■■□□□ 1.1
LIG3-215ENST00000592690 KCNH5Q8NCM2 988 aa21.91■■□□□ 1.1
LIG3-215ENST00000592690 UPF1Q92900 1129 aaKnown RBP eCLIP21.91■■□□□ 1.1
LIG3-215ENST00000592690 ONECUT3O60422 494 aaPredicted RBP21.9■■□□□ 1.1
LIG3-215ENST00000592690 FAM98CQ17RN3 349 aaKnown RBP21.9■■□□□ 1.1
LIG3-215ENST00000592690 ARHGEF25Q86VW2 580 aa21.9■■□□□ 1.1
LIG3-215ENST00000592690 SEPT12Q8IYM1 358 aa21.9■■□□□ 1.1
LIG3-215ENST00000592690 WNK3Q9BYP7 1800 aa21.9■■□□□ 1.1
LIG3-215ENST00000592690 SPATA31A1Q5TZJ5 1347 aa21.89■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms