RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 PIK3R4Q99570 1358 aa13.94□□□□□ -0.18
VPS4B-206ENST00000591475 IGHDP01880 384 aa13.93□□□□□ -0.18
VPS4B-206ENST00000591475 CANXP27824 592 aaKnown RBP13.93□□□□□ -0.18
VPS4B-206ENST00000591475 FRAT1Q92837 279 aaPredicted RBP13.93□□□□□ -0.18
VPS4B-206ENST00000591475 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
VPS4B-206ENST00000591475 CLUAP1Q96AJ1 413 aa13.93□□□□□ -0.18
VPS4B-206ENST00000591475 DMRT2Q9Y5R5 561 aa13.93□□□□□ -0.18
VPS4B-206ENST00000591475 NPHP4O75161 1426 aaPredicted RBP13.93□□□□□ -0.18
VPS4B-206ENST00000591475 FAM135BQ49AJ0 1406 aa13.93□□□□□ -0.18
VPS4B-206ENST00000591475 QRICH2Q9H0J4 1663 aa13.92□□□□□ -0.18
VPS4B-206ENST00000591475 SAFB2Q14151 953 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS4B-206ENST00000591475 WWC1Q8IX03 1113 aa13.91□□□□□ -0.18
VPS4B-206ENST00000591475 LMTK3Q96Q04 1460 aa13.91□□□□□ -0.18
VPS4B-206ENST00000591475 EVC2Q86UK5 1308 aa13.91□□□□□ -0.18
VPS4B-206ENST00000591475 NCKAP5LQ9HCH0 1330 aa13.91□□□□□ -0.18
VPS4B-206ENST00000591475 AMOTL2Q9Y2J4 779 aa13.91□□□□□ -0.18
VPS4B-206ENST00000591475 FRAT2O75474 233 aaPredicted RBP13.9□□□□□ -0.18
VPS4B-206ENST00000591475 AAMPQ13685 434 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 CPS1P31327 1500 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 USP32Q8NFA0 1604 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 KNDC1Q76NI1 1749 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 WAPLQ7Z5K2 1190 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 PANK1Q8TE04 598 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 PUS7Q96PZ0 661 aaKnown RBP13.9□□□□□ -0.18
VPS4B-206ENST00000591475 BRPF3Q9ULD4 1205 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 COG6Q9Y2V7 657 aa13.9□□□□□ -0.18
VPS4B-206ENST00000591475 USP19O94966 1318 aa13.89□□□□□ -0.19
VPS4B-206ENST00000591475 PTPRUQ92729 1446 aa13.89□□□□□ -0.19
VPS4B-206ENST00000591475 HSPA2P54652 639 aa13.89□□□□□ -0.19
VPS4B-206ENST00000591475 IQSEC2Q5JU85 1478 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 ROBO2Q9HCK4 1378 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 BECN1Q14457 450 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 PMFBP1Q8TBY8 1022 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 RUNDC1Q96C34 613 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 NSD3Q9BZ95 1437 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 MINK1Q8N4C8 1332 aaPredicted RBP13.88□□□□□ -0.19
VPS4B-206ENST00000591475 MORC1Q86VD1 984 aa13.88□□□□□ -0.19
VPS4B-206ENST00000591475 PTCH1Q13635 1447 aa13.87□□□□□ -0.19
VPS4B-206ENST00000591475 RARSP54136 660 aaKnown RBP13.86□□□□□ -0.19
VPS4B-206ENST00000591475 ANO8Q9HCE9 1232 aaPredicted RBP13.86□□□□□ -0.19
VPS4B-206ENST00000591475 TULP4Q9NRJ4 1543 aa13.86□□□□□ -0.19
VPS4B-206ENST00000591475 WDR63Q8IWG1 891 aa13.85□□□□□ -0.19
VPS4B-206ENST00000591475 KCNA6P17658 529 aa13.85□□□□□ -0.19
VPS4B-206ENST00000591475 SRPK2P78362 688 aaKnown RBP13.85□□□□□ -0.19
VPS4B-206ENST00000591475 SEC24BO95487 1268 aa13.84□□□□□ -0.19
VPS4B-206ENST00000591475 TCP11L2Q8N4U5 519 aa13.84□□□□□ -0.19
VPS4B-206ENST00000591475 XRN1Q8IZH2 1706 aaKnown RBP13.84□□□□□ -0.19
VPS4B-206ENST00000591475 NEUROD2Q15784 382 aa13.83□□□□□ -0.2
VPS4B-206ENST00000591475 CDK19Q9BWU1 502 aa13.83□□□□□ -0.2
VPS4B-206ENST00000591475 UPF2Q9HAU5 1272 aaKnown RBP13.83□□□□□ -0.2
VPS4B-206ENST00000591475 CABP2Q9NPB3 220 aa13.83□□□□□ -0.2
VPS4B-206ENST00000591475 CFAP53Q96M91 514 aa13.83□□□□□ -0.2
VPS4B-206ENST00000591475 RRP7AQ9Y3A4 280 aaKnown RBP13.83□□□□□ -0.2
VPS4B-206ENST00000591475 ATAD2Q6PL18 1390 aa13.83□□□□□ -0.2
VPS4B-206ENST00000591475 WASLO00401 505 aaPredicted RBP13.82□□□□□ -0.2
VPS4B-206ENST00000591475 CCDC27Q2M243 656 aa13.82□□□□□ -0.2
VPS4B-206ENST00000591475 CHD2O14647 1828 aaKnown RBP13.82□□□□□ -0.2
VPS4B-206ENST00000591475 TNNT2P45379 298 aaPredicted RBP13.81□□□□□ -0.2
VPS4B-206ENST00000591475 NCBP3Q53F19 620 aaKnown RBP13.81□□□□□ -0.2
VPS4B-206ENST00000591475 RWDD1Q9H446 243 aaPredicted RBP13.81□□□□□ -0.2
VPS4B-206ENST00000591475 PCDHB15Q9Y5E8 787 aa13.81□□□□□ -0.2
VPS4B-206ENST00000591475 SLC12A5Q9H2X9 1139 aa13.8□□□□□ -0.2
VPS4B-206ENST00000591475 RLBP1P12271 317 aa13.8□□□□□ -0.2
VPS4B-206ENST00000591475 MYH16Q9H6N6 1097 aa13.8□□□□□ -0.2
VPS4B-206ENST00000591475 PDZRN3Q9UPQ7 1066 aa13.8□□□□□ -0.2
VPS4B-206ENST00000591475 ADGRB2O60241 1585 aa13.79□□□□□ -0.2
VPS4B-206ENST00000591475 MTHFSP49914 203 aa13.79□□□□□ -0.2
VPS4B-206ENST00000591475 TBC1D32Q96NH3 1257 aa13.78□□□□□ -0.2
VPS4B-206ENST00000591475 NSD2O96028 1365 aa13.78□□□□□ -0.2
VPS4B-206ENST00000591475 TNNQ9UQP3 1299 aa13.78□□□□□ -0.2
VPS4B-206ENST00000591475 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.78□□□□□ -0.2
VPS4B-206ENST00000591475 NWD1Q149M9 1564 aa13.77□□□□□ -0.2
VPS4B-206ENST00000591475 STRCQ7RTU9 1775 aa13.77□□□□□ -0.2
VPS4B-206ENST00000591475 SLKQ9H2G2 1235 aaPredicted RBP13.77□□□□□ -0.21
VPS4B-206ENST00000591475 BCL2L13Q9BXK5 485 aa13.76□□□□□ -0.21
VPS4B-206ENST00000591475 MVPQ14764 893 aaKnown RBP13.76□□□□□ -0.21
VPS4B-206ENST00000591475 ANTXR1Q9H6X2 564 aa13.76□□□□□ -0.21
VPS4B-206ENST00000591475 CCDC61Q9Y6R9 512 aa13.76□□□□□ -0.21
VPS4B-206ENST00000591475 ANKRD36BQ8N2N9 1353 aa13.76□□□□□ -0.21
VPS4B-206ENST00000591475 CT47B1P0C2W7 299 aaPredicted RBP13.75□□□□□ -0.21
VPS4B-206ENST00000591475 ZKSCAN2Q63HK3 967 aa13.75□□□□□ -0.21
VPS4B-206ENST00000591475 NUDT16Q96DE0 195 aaKnown RBP13.75□□□□□ -0.21
VPS4B-206ENST00000591475 TERF2IPQ9NYB0 399 aa13.75□□□□□ -0.21
VPS4B-206ENST00000591475 FAM43AQ8N2R8 423 aa13.74□□□□□ -0.21
VPS4B-206ENST00000591475 CABP1Q9NZU7 370 aa13.74□□□□□ -0.21
VPS4B-206ENST00000591475 PROSER2Q86WR7 435 aaPredicted RBP13.74□□□□□ -0.21
VPS4B-206ENST00000591475 TBC1D2Q9BYX2 928 aa13.74□□□□□ -0.21
VPS4B-206ENST00000591475 U2AF1L5P0DN76 240 aaPredicted RBP13.73□□□□□ -0.21
VPS4B-206ENST00000591475 U2AF1Q01081 240 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS4B-206ENST00000591475 FTSJ3Q8IY81 847 aaKnown RBP13.73□□□□□ -0.21
VPS4B-206ENST00000591475 DZIP1LQ8IYY4 767 aaKnown RBP13.73□□□□□ -0.21
VPS4B-206ENST00000591475 L1TD1Q5T7N2 865 aaKnown RBP13.73□□□□□ -0.21
VPS4B-206ENST00000591475 HDGFL2Q7Z4V5 671 aaPredicted RBP13.73□□□□□ -0.21
VPS4B-206ENST00000591475 PPIP5K1Q6PFW1 1433 aa13.72□□□□□ -0.21
VPS4B-206ENST00000591475 ADGRL3Q9HAR2 1447 aa13.72□□□□□ -0.21
VPS4B-206ENST00000591475 ATP7BP35670 1465 aa13.72□□□□□ -0.21
VPS4B-206ENST00000591475 C14orf37Q86TY3 774 aa13.72□□□□□ -0.21
VPS4B-206ENST00000591475 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.72□□□□□ -0.21
VPS4B-206ENST00000591475 ANKRD26Q9UPS8 1709 aa13.71□□□□□ -0.21
VPS4B-206ENST00000591475 A0A1W2PP64 1363 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms