RNA–Protein interactions for RNA: ENST00000590260.5

DDX39A-212, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 988 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-212ENST00000590260 SLIT2O94813 1529 aa25.9■■□□□ 1.74
DDX39A-212ENST00000590260 PHRF1Q9P1Y6 1649 aaKnown RBP25.89■■□□□ 1.74
DDX39A-212ENST00000590260 CCER1Q8TC90 406 aaPredicted RBP25.89■■□□□ 1.74
DDX39A-212ENST00000590260 TESK2Q96S53 571 aa25.89■■□□□ 1.74
DDX39A-212ENST00000590260 AKAP12Q02952 1782 aa25.88■■□□□ 1.73
DDX39A-212ENST00000590260 PLCH1Q4KWH8 1693 aa25.88■■□□□ 1.73
DDX39A-212ENST00000590260 SSH2Q76I76 1423 aa25.88■■□□□ 1.73
DDX39A-212ENST00000590260 PAK3O75914 559 aaPredicted RBP25.87■■□□□ 1.73
DDX39A-212ENST00000590260 QTRT2Q9H974 415 aaKnown RBP25.87■■□□□ 1.73
DDX39A-212ENST00000590260 USP21Q9UK80 565 aa25.87■■□□□ 1.73
DDX39A-212ENST00000590260 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.87■■□□□ 1.73
DDX39A-212ENST00000590260 ATRNO75882 1429 aa25.87■■□□□ 1.73
DDX39A-212ENST00000590260 ST20-MTHFSA0A0A6YYL1 179 aa25.86■■□□□ 1.73
DDX39A-212ENST00000590260 USP6P35125 1406 aa25.86■■□□□ 1.73
DDX39A-212ENST00000590260 NRKQ7Z2Y5 1582 aa25.84■■□□□ 1.73
DDX39A-212ENST00000590260 CPSF1Q10570 1443 aaKnown RBP25.83■■□□□ 1.73
DDX39A-212ENST00000590260 CD163L1Q9NR16 1453 aa25.83■■□□□ 1.73
DDX39A-212ENST00000590260 USP47Q96K76 1375 aa25.82■■□□□ 1.72
DDX39A-212ENST00000590260 RXRBP28702 533 aa25.82■■□□□ 1.72
DDX39A-212ENST00000590260 NUTM2GQ5VZR2 741 aa25.82■■□□□ 1.72
DDX39A-212ENST00000590260 CDK12Q9NYV4 1490 aaPredicted RBP25.82■■□□□ 1.72
DDX39A-212ENST00000590260 ATAD2Q6PL18 1390 aa25.82■■□□□ 1.72
DDX39A-212ENST00000590260 PIK3C2AO00443 1686 aa25.81■■□□□ 1.72
DDX39A-212ENST00000590260 NRAPQ86VF7 1730 aa25.81■■□□□ 1.72
DDX39A-212ENST00000590260 NWD2Q9ULI1 1742 aa25.81■■□□□ 1.72
DDX39A-212ENST00000590260 FAM83GA6ND36 823 aa25.81■■□□□ 1.72
DDX39A-212ENST00000590260 RGS12O14924 1447 aa25.8■■□□□ 1.72
DDX39A-212ENST00000590260 MON2Q7Z3U7 1717 aa25.8■■□□□ 1.72
DDX39A-212ENST00000590260 GLI3P10071 1580 aa25.78■■□□□ 1.72
DDX39A-212ENST00000590260 COL14A1Q05707 1796 aaKnown RBP25.78■■□□□ 1.72
DDX39A-212ENST00000590260 HAP1P54257 671 aaPredicted RBP25.78■■□□□ 1.72
DDX39A-212ENST00000590260 RBM6P78332 1123 aaKnown RBP25.78■■□□□ 1.72
DDX39A-212ENST00000590260 USP19O94966 1318 aa25.78■■□□□ 1.72
DDX39A-212ENST00000590260 BRD4O60885 1362 aaPredicted RBP25.78■■□□□ 1.72
DDX39A-212ENST00000590260 TRPC5Q9UL62 973 aaPredicted RBP25.77■■□□□ 1.72
DDX39A-212ENST00000590260 UNC5CLQ8IV45 518 aa25.76■■□□□ 1.71
DDX39A-212ENST00000590260 ABTB2Q8N961 1025 aa25.76■■□□□ 1.71
DDX39A-212ENST00000590260 PUS7Q96PZ0 661 aaKnown RBP25.73■■□□□ 1.71
DDX39A-212ENST00000590260 SLC12A5Q9H2X9 1139 aa25.73■■□□□ 1.71
DDX39A-212ENST00000590260 SLIT3O75094 1523 aa25.73■■□□□ 1.71
DDX39A-212ENST00000590260 KIAA0232Q92628 1395 aa25.72■■□□□ 1.71
DDX39A-212ENST00000590260 TTC21BQ7Z4L5 1316 aa25.72■■□□□ 1.71
DDX39A-212ENST00000590260 GJD4Q96KN9 370 aaPredicted RBP25.7■■□□□ 1.7
DDX39A-212ENST00000590260 ZNF692Q9BU19 519 aaPredicted RBP25.7■■□□□ 1.7
DDX39A-212ENST00000590260 LMO7Q8WWI1 1683 aa25.7■■□□□ 1.7
DDX39A-212ENST00000590260 KTN1Q86UP2 1357 aaKnown RBP25.69■■□□□ 1.7
DDX39A-212ENST00000590260 ZC3H6P61129 1189 aaKnown RBP25.68■■□□□ 1.7
DDX39A-212ENST00000590260 CHRNA2Q15822 529 aa25.68■■□□□ 1.7
DDX39A-212ENST00000590260 BTG4Q9NY30 223 aa25.68■■□□□ 1.7
DDX39A-212ENST00000590260 A0A1W2PP64 1363 aa25.68■■□□□ 1.7
DDX39A-212ENST00000590260 VPS72Q15906 364 aa25.67■■□□□ 1.7
DDX39A-212ENST00000590260 NLRP13Q86W25 1043 aa25.67■■□□□ 1.7
DDX39A-212ENST00000590260 USP54Q70EL1 1684 aa25.67■■□□□ 1.7
DDX39A-212ENST00000590260 GCP02774 474 aa25.66■■□□□ 1.7
DDX39A-212ENST00000590260 TMC1Q8TDI8 760 aa25.66■■□□□ 1.7
DDX39A-212ENST00000590260 PRDM11Q9NQV5 511 aa25.66■■□□□ 1.7
DDX39A-212ENST00000590260 CPDO75976 1380 aa25.66■■□□□ 1.7
DDX39A-212ENST00000590260 NLRP6P59044 892 aa25.65■■□□□ 1.7
DDX39A-212ENST00000590260 ZRANB1Q9UGI0 708 aa25.65■■□□□ 1.7
DDX39A-212ENST00000590260 MYOM1P52179 1685 aa25.64■■□□□ 1.7
DDX39A-212ENST00000590260 CAMTA1Q9Y6Y1 1673 aa25.64■■□□□ 1.7
DDX39A-212ENST00000590260 TTC21AQ8NDW8 1320 aa25.64■■□□□ 1.7
DDX39A-212ENST00000590260 COL18A1P39060 1754 aa25.63■■□□□ 1.69
DDX39A-212ENST00000590260 TMF1P82094 1093 aa25.61■■□□□ 1.69
DDX39A-212ENST00000590260 NFAT5O94916 1531 aa25.61■■□□□ 1.69
DDX39A-212ENST00000590260 EDC4Q6P2E9 1401 aaKnown RBP25.61■■□□□ 1.69
DDX39A-212ENST00000590260 BRWD3Q6RI45 1802 aa25.6■■□□□ 1.69
DDX39A-212ENST00000590260 NINLQ9Y2I6 1382 aa25.6■■□□□ 1.69
DDX39A-212ENST00000590260 NME9Q86XW9 330 aa25.6■■□□□ 1.69
DDX39A-212ENST00000590260 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.6■■□□□ 1.69
DDX39A-212ENST00000590260 USP31Q70CQ4 1352 aa25.59■■□□□ 1.69
DDX39A-212ENST00000590260 SLC24A1O60721 1099 aa25.59■■□□□ 1.69
DDX39A-212ENST00000590260 ONECUT3O60422 494 aaPredicted RBP25.57■■□□□ 1.68
DDX39A-212ENST00000590260 HDGFL2Q7Z4V5 671 aaPredicted RBP25.57■■□□□ 1.68
DDX39A-212ENST00000590260 UPF1Q92900 1129 aaKnown RBP eCLIP25.57■■□□□ 1.68
DDX39A-212ENST00000590260 SPATA31A5Q5VU36 1347 aa25.57■■□□□ 1.68
DDX39A-212ENST00000590260 SPATA31A7Q8IWB4 1347 aa25.57■■□□□ 1.68
DDX39A-212ENST00000590260 HSPA5P11021 654 aaKnown RBP25.56■■□□□ 1.68
DDX39A-212ENST00000590260 TERF2IPQ9NYB0 399 aa25.56■■□□□ 1.68
DDX39A-212ENST00000590260 ANKRD36BQ8N2N9 1353 aa25.55■■□□□ 1.68
DDX39A-212ENST00000590260 OVOS2A0A0J9YW53 1432 aa25.54■■□□□ 1.68
DDX39A-212ENST00000590260 OVOS2Q6IE36 1432 aa25.54■■□□□ 1.68
DDX39A-212ENST00000590260 CCDC9Q9Y3X0 531 aaKnown RBP25.54■■□□□ 1.68
DDX39A-212ENST00000590260 THSD7AQ9UPZ6 1657 aa25.54■■□□□ 1.68
DDX39A-212ENST00000590260 COL5A2P05997 1499 aaPredicted RBP25.53■■□□□ 1.68
DDX39A-212ENST00000590260 RGPD5Q99666 1765 aa25.53■■□□□ 1.68
DDX39A-212ENST00000590260 AATKQ6ZMQ8 1374 aa25.53■■□□□ 1.68
DDX39A-212ENST00000590260 ARHGEF25Q86VW2 580 aa25.52■■□□□ 1.68
DDX39A-212ENST00000590260 SEPT12Q8IYM1 358 aa25.52■■□□□ 1.68
DDX39A-212ENST00000590260 STRN4Q9NRL3 753 aa25.52■■□□□ 1.68
DDX39A-212ENST00000590260 EIF4G2P78344 907 aaKnown RBP eCLIP25.51■■□□□ 1.67
DDX39A-212ENST00000590260 AXIN2Q9Y2T1 843 aa25.51■■□□□ 1.67
DDX39A-212ENST00000590260 SPATA31A1Q5TZJ5 1347 aa25.51■■□□□ 1.67
DDX39A-212ENST00000590260 SOX12O15370 315 aa25.5■■□□□ 1.67
DDX39A-212ENST00000590260 FAM98CQ17RN3 349 aaKnown RBP25.5■■□□□ 1.67
DDX39A-212ENST00000590260 LARP1Q6PKG0 1096 aaKnown RBP25.49■■□□□ 1.67
DDX39A-212ENST00000590260 ZBTB7CA1YPR0 619 aa25.48■■□□□ 1.67
DDX39A-212ENST00000590260 EP400Q96L91 3159 aa25.48■■□□□ 1.67
DDX39A-212ENST00000590260 LTN1O94822 1766 aa25.47■■□□□ 1.67
DDX39A-212ENST00000590260 KCNH5Q8NCM2 988 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms