RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 CCDC136Q96JN2 1154 aa13.99□□□□□ -0.17
ZNF540-208ENST00000589857 ADGRB1O14514 1584 aa13.99□□□□□ -0.17
ZNF540-208ENST00000589857 ADGRL3Q9HAR2 1447 aa13.98□□□□□ -0.17
ZNF540-208ENST00000589857 NSD2O96028 1365 aa13.98□□□□□ -0.17
ZNF540-208ENST00000589857 MYOM1P52179 1685 aa13.98□□□□□ -0.17
ZNF540-208ENST00000589857 RBM19Q9Y4C8 960 aaKnown RBP13.98□□□□□ -0.17
ZNF540-208ENST00000589857 MYO5BQ9ULV0 1848 aa13.98□□□□□ -0.17
ZNF540-208ENST00000589857 RGS12O14924 1447 aa13.98□□□□□ -0.17
ZNF540-208ENST00000589857 PTCH1Q13635 1447 aa13.97□□□□□ -0.17
ZNF540-208ENST00000589857 NEXMIFQ5QGS0 1516 aa13.96□□□□□ -0.17
ZNF540-208ENST00000589857 FNBP4Q8N3X1 1017 aaPredicted RBP13.96□□□□□ -0.17
ZNF540-208ENST00000589857 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.96□□□□□ -0.17
ZNF540-208ENST00000589857 METP08581 1390 aa13.96□□□□□ -0.18
ZNF540-208ENST00000589857 CGNL1Q0VF96 1302 aa13.95□□□□□ -0.18
ZNF540-208ENST00000589857 TRAK1Q9UPV9 953 aa13.95□□□□□ -0.18
ZNF540-208ENST00000589857 POLR3AO14802 1390 aaPredicted RBP13.95□□□□□ -0.18
ZNF540-208ENST00000589857 SOS2Q07890 1332 aaPredicted RBP13.94□□□□□ -0.18
ZNF540-208ENST00000589857 FANCIQ9NVI1 1328 aa13.94□□□□□ -0.18
ZNF540-208ENST00000589857 C1orf167Q5SNV9 1468 aa13.94□□□□□ -0.18
ZNF540-208ENST00000589857 B4GALNT3Q6L9W6 998 aa13.94□□□□□ -0.18
ZNF540-208ENST00000589857 ADAMTS8Q9UP79 889 aa13.94□□□□□ -0.18
ZNF540-208ENST00000589857 NHSL1Q5SYE7 1610 aa13.93□□□□□ -0.18
ZNF540-208ENST00000589857 USP32Q8NFA0 1604 aa13.93□□□□□ -0.18
ZNF540-208ENST00000589857 NPHP3Q7Z494 1330 aa13.93□□□□□ -0.18
ZNF540-208ENST00000589857 DDX17Q92841 729 aaKnown RBP13.93□□□□□ -0.18
ZNF540-208ENST00000589857 CFAP53Q96M91 514 aa13.93□□□□□ -0.18
ZNF540-208ENST00000589857 GOLGA2Q08379 1002 aa13.92□□□□□ -0.18
ZNF540-208ENST00000589857 SF3B2Q13435 895 aaKnown RBP13.92□□□□□ -0.18
ZNF540-208ENST00000589857 MORC1Q86VD1 984 aa13.92□□□□□ -0.18
ZNF540-208ENST00000589857 XRN1Q8IZH2 1706 aaKnown RBP13.92□□□□□ -0.18
ZNF540-208ENST00000589857 QRICH2Q9H0J4 1663 aa13.91□□□□□ -0.18
ZNF540-208ENST00000589857 NSD3Q9BZ95 1437 aa13.91□□□□□ -0.18
ZNF540-208ENST00000589857 ANKRD36BQ8N2N9 1353 aa13.91□□□□□ -0.18
ZNF540-208ENST00000589857 NCBP3Q53F19 620 aaKnown RBP13.9□□□□□ -0.18
ZNF540-208ENST00000589857 ESCO1Q5FWF5 840 aa13.9□□□□□ -0.18
ZNF540-208ENST00000589857 ORAI2Q96SN7 254 aa13.9□□□□□ -0.18
ZNF540-208ENST00000589857 GJD4Q96KN9 370 aaPredicted RBP13.89□□□□□ -0.19
ZNF540-208ENST00000589857 SALL2Q9Y467 1007 aaPredicted RBP13.89□□□□□ -0.19
ZNF540-208ENST00000589857 CARD14Q9BXL6 1004 aa13.88□□□□□ -0.19
ZNF540-208ENST00000589857 ZNF521Q96K83 1311 aa13.88□□□□□ -0.19
ZNF540-208ENST00000589857 E9PSI1 815 aa13.87□□□□□ -0.19
ZNF540-208ENST00000589857 ATRNO75882 1429 aa13.87□□□□□ -0.19
ZNF540-208ENST00000589857 TMEM132EQ6IEE7 984 aa13.86□□□□□ -0.19
ZNF540-208ENST00000589857 TERF2IPQ9NYB0 399 aa13.86□□□□□ -0.19
ZNF540-208ENST00000589857 NRXN3Q9Y4C0 1643 aa13.86□□□□□ -0.19
ZNF540-208ENST00000589857 HAP1P54257 671 aaPredicted RBP13.85□□□□□ -0.19
ZNF540-208ENST00000589857 YTHDC2Q9H6S0 1430 aaKnown RBP13.84□□□□□ -0.19
ZNF540-208ENST00000589857 TCERG1O14776 1098 aaKnown RBP13.84□□□□□ -0.19
ZNF540-208ENST00000589857 UNC5CLQ8IV45 518 aa13.84□□□□□ -0.19
ZNF540-208ENST00000589857 CDCA7LQ96GN5 454 aa13.84□□□□□ -0.19
ZNF540-208ENST00000589857 POGKQ9P215 609 aa13.84□□□□□ -0.19
ZNF540-208ENST00000589857 DLC1Q96QB1 1528 aa13.84□□□□□ -0.19
ZNF540-208ENST00000589857 TULP4Q9NRJ4 1543 aa13.84□□□□□ -0.19
ZNF540-208ENST00000589857 ARHGEF28Q8N1W1 1705 aaKnown RBP13.84□□□□□ -0.19
ZNF540-208ENST00000589857 ROBO2Q9HCK4 1378 aa13.83□□□□□ -0.19
ZNF540-208ENST00000589857 PLEKHH1Q9ULM0 1364 aa13.83□□□□□ -0.19
ZNF540-208ENST00000589857 FOXO3O43524 673 aa13.83□□□□□ -0.2
ZNF540-208ENST00000589857 SLFN5Q08AF3 891 aa13.83□□□□□ -0.2
ZNF540-208ENST00000589857 DUSP27Q5VZP5 1158 aa13.83□□□□□ -0.2
ZNF540-208ENST00000589857 HDGFL2Q7Z4V5 671 aaPredicted RBP13.83□□□□□ -0.2
ZNF540-208ENST00000589857 MS4A1P11836 297 aa13.82□□□□□ -0.2
ZNF540-208ENST00000589857 PSME1Q06323 249 aa13.82□□□□□ -0.2
ZNF540-208ENST00000589857 ERICH6Q7L0X2 663 aa13.82□□□□□ -0.2
ZNF540-208ENST00000589857 EXOC6Q8TAG9 804 aa13.82□□□□□ -0.2
ZNF540-208ENST00000589857 RUNDC1Q96C34 613 aa13.82□□□□□ -0.2
ZNF540-208ENST00000589857 SLC12A5Q9H2X9 1139 aa13.82□□□□□ -0.2
ZNF540-208ENST00000589857 SRPK2P78362 688 aaKnown RBP13.81□□□□□ -0.2
ZNF540-208ENST00000589857 TRMT2AQ8IZ69 625 aaKnown RBP13.81□□□□□ -0.2
ZNF540-208ENST00000589857 ANP32EQ9BTT0 268 aa13.81□□□□□ -0.2
ZNF540-208ENST00000589857 PNNQ9H307 717 aaKnown RBP13.81□□□□□ -0.2
ZNF540-208ENST00000589857 ABCC11Q96J66 1382 aa13.81□□□□□ -0.2
ZNF540-208ENST00000589857 NALCNQ8IZF0 1738 aa13.81□□□□□ -0.2
ZNF540-208ENST00000589857 APAF1O14727 1248 aa13.8□□□□□ -0.2
ZNF540-208ENST00000589857 BCL9LQ86UU0 1499 aa13.8□□□□□ -0.2
ZNF540-208ENST00000589857 COL22A1Q8NFW1 1626 aaPredicted RBP13.79□□□□□ -0.2
ZNF540-208ENST00000589857 AAMPQ13685 434 aa13.79□□□□□ -0.2
ZNF540-208ENST00000589857 CCDC27Q2M243 656 aa13.79□□□□□ -0.2
ZNF540-208ENST00000589857 WDR63Q8IWG1 891 aa13.79□□□□□ -0.2
ZNF540-208ENST00000589857 SENP3-EIF4A1A0A087X0R7 540 aa13.78□□□□□ -0.2
ZNF540-208ENST00000589857 CCDC9Q9Y3X0 531 aaKnown RBP13.78□□□□□ -0.2
ZNF540-208ENST00000589857 ANP32AP39687 249 aaKnown RBP13.77□□□□□ -0.21
ZNF540-208ENST00000589857 SRCAPQ6ZRS2 3230 aa13.77□□□□□ -0.21
ZNF540-208ENST00000589857 CCDC146Q8IYE0 955 aa13.77□□□□□ -0.21
ZNF540-208ENST00000589857 SIRT1Q96EB6 747 aa13.77□□□□□ -0.21
ZNF540-208ENST00000589857 PRAM1Q96QH2 718 aa13.77□□□□□ -0.21
ZNF540-208ENST00000589857 CABP2Q9NPB3 220 aa13.77□□□□□ -0.21
ZNF540-208ENST00000589857 STK26Q9P289 416 aa13.77□□□□□ -0.21
ZNF540-208ENST00000589857 CDC42BPGQ6DT37 1551 aa13.76□□□□□ -0.21
ZNF540-208ENST00000589857 SPATA31A3Q5VYP0 1347 aa13.76□□□□□ -0.21
ZNF540-208ENST00000589857 BAG6P46379 1132 aa13.76□□□□□ -0.21
ZNF540-208ENST00000589857 XPCQ01831 940 aaPredicted RBP13.76□□□□□ -0.21
ZNF540-208ENST00000589857 KRT28Q7Z3Y7 464 aa13.76□□□□□ -0.21
ZNF540-208ENST00000589857 ATP7BP35670 1465 aa13.75□□□□□ -0.21
ZNF540-208ENST00000589857 A0A1W2PP64 1363 aa13.75□□□□□ -0.21
ZNF540-208ENST00000589857 CT47B1P0C2W7 299 aaPredicted RBP13.75□□□□□ -0.21
ZNF540-208ENST00000589857 MTHFSP49914 203 aa13.75□□□□□ -0.21
ZNF540-208ENST00000589857 VPS72Q15906 364 aa13.75□□□□□ -0.21
ZNF540-208ENST00000589857 CENPQQ7L2Z9 268 aaPredicted RBP13.75□□□□□ -0.21
ZNF540-208ENST00000589857 KRT27Q7Z3Y8 459 aa13.75□□□□□ -0.21
ZNF540-208ENST00000589857 SEPT12Q8IYM1 358 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 545.1 ms