RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 NWD1Q149M9 1564 aa14.18□□□□□ -0.14
SS18-217ENST00000580958 NSD2O96028 1365 aa14.18□□□□□ -0.14
SS18-217ENST00000580958 MORC1Q86VD1 984 aa14.17□□□□□ -0.14
SS18-217ENST00000580958 ATXN8OSP0DMR3 200 aa14.16□□□□□ -0.14
SS18-217ENST00000580958 CCDC61Q9Y6R9 512 aa14.15□□□□□ -0.14
SS18-217ENST00000580958 CPSF1Q10570 1443 aaKnown RBP14.15□□□□□ -0.14
SS18-217ENST00000580958 STRCP1A6NGW2 1772 aa14.14□□□□□ -0.15
SS18-217ENST00000580958 NRKQ7Z2Y5 1582 aa14.14□□□□□ -0.15
SS18-217ENST00000580958 STRCQ7RTU9 1775 aa14.14□□□□□ -0.15
SS18-217ENST00000580958 SHPRHQ149N8 1683 aa14.14□□□□□ -0.15
SS18-217ENST00000580958 MAP2P11137 1827 aaKnown RBP14.13□□□□□ -0.15
SS18-217ENST00000580958 NKTRP30414 1462 aaKnown RBP14.13□□□□□ -0.15
SS18-217ENST00000580958 NUTM2FA1L443 756 aa14.13□□□□□ -0.15
SS18-217ENST00000580958 TNNT2P45379 298 aaPredicted RBP14.12□□□□□ -0.15
SS18-217ENST00000580958 HSPA2P54652 639 aa14.12□□□□□ -0.15
SS18-217ENST00000580958 GGNBP2Q9H3C7 697 aa14.12□□□□□ -0.15
SS18-217ENST00000580958 EDC4Q6P2E9 1401 aaKnown RBP14.12□□□□□ -0.15
SS18-217ENST00000580958 LMTK3Q96Q04 1460 aa14.12□□□□□ -0.15
SS18-217ENST00000580958 FYB1O15117 783 aa14.11□□□□□ -0.15
SS18-217ENST00000580958 ZBED9Q6R2W3 1325 aa14.11□□□□□ -0.15
SS18-217ENST00000580958 BLMP54132 1417 aaPredicted RBP14.1□□□□□ -0.15
SS18-217ENST00000580958 ANKARQ7Z5J8 1434 aa14.1□□□□□ -0.15
SS18-217ENST00000580958 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.1□□□□□ -0.15
SS18-217ENST00000580958 POLR3AO14802 1390 aaPredicted RBP14.09□□□□□ -0.15
SS18-217ENST00000580958 ADGRL3Q9HAR2 1447 aa14.09□□□□□ -0.15
SS18-217ENST00000580958 PLEKHG3A1L390 1219 aa14.09□□□□□ -0.15
SS18-217ENST00000580958 INSRP06213 1382 aa14.09□□□□□ -0.15
SS18-217ENST00000580958 WDR43Q15061 677 aaKnown RBP eCLIP14.08□□□□□ -0.16
SS18-217ENST00000580958 RBM33Q96EV2 1170 aaKnown RBP14.08□□□□□ -0.16
SS18-217ENST00000580958 ACEP12821 1306 aa14.08□□□□□ -0.16
SS18-217ENST00000580958 SENP3-EIF4A1A0A087X0R7 540 aa14.07□□□□□ -0.16
SS18-217ENST00000580958 ZNF692Q9BU19 519 aaPredicted RBP14.07□□□□□ -0.16
SS18-217ENST00000580958 NME9Q86XW9 330 aa14.06□□□□□ -0.16
SS18-217ENST00000580958 ADAMTS8Q9UP79 889 aa14.06□□□□□ -0.16
SS18-217ENST00000580958 USP6P35125 1406 aa14.06□□□□□ -0.16
SS18-217ENST00000580958 MTHFSP49914 203 aa14.05□□□□□ -0.16
SS18-217ENST00000580958 PROSER2Q86WR7 435 aaPredicted RBP14.05□□□□□ -0.16
SS18-217ENST00000580958 PMFBP1Q8TBY8 1022 aa14.05□□□□□ -0.16
SS18-217ENST00000580958 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
SS18-217ENST00000580958 XIRP1Q702N8 1843 aaKnown RBP14.05□□□□□ -0.16
SS18-217ENST00000580958 C14orf37Q86TY3 774 aa14.04□□□□□ -0.16
SS18-217ENST00000580958 CFAP53Q96M91 514 aa14.04□□□□□ -0.16
SS18-217ENST00000580958 ZRANB1Q9UGI0 708 aa14.04□□□□□ -0.16
SS18-217ENST00000580958 TTC21BQ7Z4L5 1316 aa14.04□□□□□ -0.16
SS18-217ENST00000580958 NGDNQ8NEJ9 315 aaKnown RBP14.03□□□□□ -0.16
SS18-217ENST00000580958 SSH2Q76I76 1423 aa14.03□□□□□ -0.16
SS18-217ENST00000580958 COL3A1P02461 1466 aaPredicted RBP14.03□□□□□ -0.16
SS18-217ENST00000580958 PIK3C2AO00443 1686 aa14.03□□□□□ -0.16
SS18-217ENST00000580958 MARF1Q9Y4F3 1742 aaKnown RBP14.02□□□□□ -0.16
SS18-217ENST00000580958 USP54Q70EL1 1684 aa14.01□□□□□ -0.17
SS18-217ENST00000580958 COG3Q96JB2 828 aa14.01□□□□□ -0.17
SS18-217ENST00000580958 CHRDL2Q6WN34 429 aa14□□□□□ -0.17
SS18-217ENST00000580958 AKT1S1Q96B36 256 aa14□□□□□ -0.17
SS18-217ENST00000580958 OVOS2A0A0J9YW53 1432 aa13.99□□□□□ -0.17
SS18-217ENST00000580958 OVOS2Q6IE36 1432 aa13.99□□□□□ -0.17
SS18-217ENST00000580958 TTC21AQ8NDW8 1320 aa13.99□□□□□ -0.17
SS18-217ENST00000580958 KIF1AQ12756 1690 aa13.99□□□□□ -0.17
SS18-217ENST00000580958 CCDC146Q8IYE0 955 aa13.99□□□□□ -0.17
SS18-217ENST00000580958 PHF8Q9UPP1 1060 aa13.99□□□□□ -0.17
SS18-217ENST00000580958 SALL2Q9Y467 1007 aaPredicted RBP13.99□□□□□ -0.17
SS18-217ENST00000580958 TMEM94Q12767 1356 aa13.98□□□□□ -0.17
SS18-217ENST00000580958 FBLN1P23142 703 aa13.98□□□□□ -0.17
SS18-217ENST00000580958 SMG6Q86US8 1419 aaKnown RBP13.98□□□□□ -0.17
SS18-217ENST00000580958 AATKQ6ZMQ8 1374 aa13.97□□□□□ -0.17
SS18-217ENST00000580958 POLKQ9UBT6 870 aa13.97□□□□□ -0.17
SS18-217ENST00000580958 PEAK1Q9H792 1746 aa13.96□□□□□ -0.17
SS18-217ENST00000580958 CDK12Q9NYV4 1490 aaPredicted RBP13.96□□□□□ -0.17
SS18-217ENST00000580958 PNPLA6Q8IY17 1366 aa13.96□□□□□ -0.18
SS18-217ENST00000580958 ESCO1Q5FWF5 840 aa13.95□□□□□ -0.18
SS18-217ENST00000580958 C19orf44Q9H6X5 657 aa13.95□□□□□ -0.18
SS18-217ENST00000580958 EMILIN1Q9Y6C2 1016 aa13.95□□□□□ -0.18
SS18-217ENST00000580958 NCOA3Q9Y6Q9 1424 aa13.95□□□□□ -0.18
SS18-217ENST00000580958 TRPM3Q9HCF6 1732 aaPredicted RBP13.95□□□□□ -0.18
SS18-217ENST00000580958 USP31Q70CQ4 1352 aa13.95□□□□□ -0.18
SS18-217ENST00000580958 C1orf167Q5SNV9 1468 aa13.94□□□□□ -0.18
SS18-217ENST00000580958 PPM1GO15355 546 aaPredicted RBP13.94□□□□□ -0.18
SS18-217ENST00000580958 NUDCQ9Y266 331 aa13.94□□□□□ -0.18
SS18-217ENST00000580958 LRRC7Q96NW7 1537 aa13.94□□□□□ -0.18
SS18-217ENST00000580958 DCCP43146 1447 aa13.93□□□□□ -0.18
SS18-217ENST00000580958 MST1RQ04912 1400 aa13.93□□□□□ -0.18
SS18-217ENST00000580958 APAF1O14727 1248 aa13.93□□□□□ -0.18
SS18-217ENST00000580958 DIAPH1O60610 1272 aaKnown RBP13.93□□□□□ -0.18
SS18-217ENST00000580958 RRS1Q15050 365 aaKnown RBP13.93□□□□□ -0.18
SS18-217ENST00000580958 LTN1O94822 1766 aa13.93□□□□□ -0.18
SS18-217ENST00000580958 IQSEC2Q5JU85 1478 aa13.93□□□□□ -0.18
SS18-217ENST00000580958 U2SURPO15042 1029 aaKnown RBP13.92□□□□□ -0.18
SS18-217ENST00000580958 U2AF1L5P0DN76 240 aaPredicted RBP13.92□□□□□ -0.18
SS18-217ENST00000580958 U2AF1Q01081 240 aaKnown RBP eCLIP13.92□□□□□ -0.18
SS18-217ENST00000580958 PDE3BQ13370 1112 aa13.92□□□□□ -0.18
SS18-217ENST00000580958 RUNDC1Q96C34 613 aa13.92□□□□□ -0.18
SS18-217ENST00000580958 ORAI2Q96SN7 254 aa13.92□□□□□ -0.18
SS18-217ENST00000580958 PAK3O75914 559 aaPredicted RBP13.91□□□□□ -0.18
SS18-217ENST00000580958 ATF3P18847 181 aa13.91□□□□□ -0.18
SS18-217ENST00000580958 ZNF335Q9H4Z2 1342 aaPredicted RBP13.9□□□□□ -0.18
SS18-217ENST00000580958 PSME1Q06323 249 aa13.9□□□□□ -0.18
SS18-217ENST00000580958 NUTM2GQ5VZR2 741 aa13.9□□□□□ -0.18
SS18-217ENST00000580958 SUPT16HQ9Y5B9 1047 aaKnown RBP13.9□□□□□ -0.18
SS18-217ENST00000580958 MSH6P52701 1360 aa13.9□□□□□ -0.18
SS18-217ENST00000580958 SOX12O15370 315 aa13.89□□□□□ -0.19
SS18-217ENST00000580958 NLRP6P59044 892 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms