RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 USP47Q96K76 1375 aa14.16□□□□□ -0.14
CRLF3-202ENST00000577725 APBA3O96018 575 aa14.14□□□□□ -0.15
CRLF3-202ENST00000577725 KIAA1210Q9ULL0 1709 aa14.14□□□□□ -0.15
CRLF3-202ENST00000577725 SPATA31A3Q5VYP0 1347 aa14.14□□□□□ -0.15
CRLF3-202ENST00000577725 NWD2Q9ULI1 1742 aa14.13□□□□□ -0.15
CRLF3-202ENST00000577725 GPRASP1Q5JY77 1395 aa14.13□□□□□ -0.15
CRLF3-202ENST00000577725 TRIM37O94972 964 aa14.13□□□□□ -0.15
CRLF3-202ENST00000577725 STAC3Q96MF2 364 aa14.13□□□□□ -0.15
CRLF3-202ENST00000577725 PIK3C2GO75747 1445 aa14.13□□□□□ -0.15
CRLF3-202ENST00000577725 ROBO2Q9HCK4 1378 aa14.11□□□□□ -0.15
CRLF3-202ENST00000577725 PLCH1Q4KWH8 1693 aa14.11□□□□□ -0.15
CRLF3-202ENST00000577725 VGFO15240 615 aaPredicted RBP14.11□□□□□ -0.15
CRLF3-202ENST00000577725 FAM196AQ6ZSG2 479 aa14.11□□□□□ -0.15
CRLF3-202ENST00000577725 RREB1Q92766 1687 aa14.09□□□□□ -0.15
CRLF3-202ENST00000577725 NUP188Q5SRE5 1749 aa14.08□□□□□ -0.16
CRLF3-202ENST00000577725 ST20-MTHFSA0A0A6YYL1 179 aa14.08□□□□□ -0.16
CRLF3-202ENST00000577725 C11orf95C9JLR9 678 aaPredicted RBP14.08□□□□□ -0.16
CRLF3-202ENST00000577725 DIEXFQ68CQ4 756 aaKnown RBP14.08□□□□□ -0.16
CRLF3-202ENST00000577725 TMEM132EQ6IEE7 984 aa14.08□□□□□ -0.16
CRLF3-202ENST00000577725 C14orf93Q9H972 538 aaKnown RBP14.08□□□□□ -0.16
CRLF3-202ENST00000577725 FAM83GA6ND36 823 aa14.07□□□□□ -0.16
CRLF3-202ENST00000577725 CABLES1Q8TDN4 633 aa14.07□□□□□ -0.16
CRLF3-202ENST00000577725 NRKQ7Z2Y5 1582 aa14.07□□□□□ -0.16
CRLF3-202ENST00000577725 ADGRB1O14514 1584 aa14.06□□□□□ -0.16
CRLF3-202ENST00000577725 CDC42BPGQ6DT37 1551 aa14.05□□□□□ -0.16
CRLF3-202ENST00000577725 DDX10Q13206 875 aaKnown RBP14.04□□□□□ -0.16
CRLF3-202ENST00000577725 SYT17Q9BSW7 474 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 POLR3GLQ9BT43 218 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 BTG4Q9NY30 223 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 SPATA31A5Q5VU36 1347 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 WASHC2AQ641Q2 1341 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 SPATA31A7Q8IWB4 1347 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 THSD7AQ9UPZ6 1657 aa14.04□□□□□ -0.16
CRLF3-202ENST00000577725 PLEKHG5O94827 1062 aa14.03□□□□□ -0.16
CRLF3-202ENST00000577725 KRT28Q7Z3Y7 464 aa14.03□□□□□ -0.16
CRLF3-202ENST00000577725 FHDC1Q9C0D6 1143 aaPredicted RBP14.03□□□□□ -0.16
CRLF3-202ENST00000577725 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
CRLF3-202ENST00000577725 CCDC7Q96M83 1385 aa14.03□□□□□ -0.16
CRLF3-202ENST00000577725 TNS3Q68CZ2 1445 aa14.03□□□□□ -0.16
CRLF3-202ENST00000577725 KIF7Q2M1P5 1343 aa14.02□□□□□ -0.17
CRLF3-202ENST00000577725 STK26Q9P289 416 aa14.02□□□□□ -0.17
CRLF3-202ENST00000577725 NRAPQ86VF7 1730 aa14.01□□□□□ -0.17
CRLF3-202ENST00000577725 PTGER2P43116 358 aa14.01□□□□□ -0.17
CRLF3-202ENST00000577725 PPP4R3CPQ6ZMV5 832 aa14.01□□□□□ -0.17
CRLF3-202ENST00000577725 CHD4Q14839 1912 aa14.01□□□□□ -0.17
CRLF3-202ENST00000577725 NUTM2FA1L443 756 aa14□□□□□ -0.17
CRLF3-202ENST00000577725 PSME1Q06323 249 aa14□□□□□ -0.17
CRLF3-202ENST00000577725 TESK2Q96S53 571 aa14□□□□□ -0.17
CRLF3-202ENST00000577725 ARHGEF28Q8N1W1 1705 aaKnown RBP14□□□□□ -0.17
CRLF3-202ENST00000577725 MYOM1P52179 1685 aa14□□□□□ -0.17
CRLF3-202ENST00000577725 ARHGEF10O15013 1369 aa13.99□□□□□ -0.17
CRLF3-202ENST00000577725 EIF3AQ14152 1382 aaKnown RBP13.99□□□□□ -0.17
CRLF3-202ENST00000577725 ZBTB7AO95365 584 aa13.99□□□□□ -0.17
CRLF3-202ENST00000577725 HSPA6P17066 643 aa13.99□□□□□ -0.17
CRLF3-202ENST00000577725 YTHDC2Q9H6S0 1430 aaKnown RBP13.98□□□□□ -0.17
CRLF3-202ENST00000577725 QRICH2Q9H0J4 1663 aa13.98□□□□□ -0.17
CRLF3-202ENST00000577725 DLC1Q96QB1 1528 aa13.98□□□□□ -0.17
CRLF3-202ENST00000577725 SLC34A2O95436 690 aa13.97□□□□□ -0.17
CRLF3-202ENST00000577725 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
CRLF3-202ENST00000577725 SBNO1A3KN83 1393 aa13.96□□□□□ -0.17
CRLF3-202ENST00000577725 CENPJQ9HC77 1338 aaPredicted RBP13.96□□□□□ -0.17
CRLF3-202ENST00000577725 KIF1AQ12756 1690 aa13.96□□□□□ -0.17
CRLF3-202ENST00000577725 SAFB2Q14151 953 aaKnown RBP eCLIP13.96□□□□□ -0.17
CRLF3-202ENST00000577725 PDGFDQ9GZP0 370 aaPredicted RBP13.96□□□□□ -0.17
CRLF3-202ENST00000577725 ATF5Q9Y2D1 282 aaPredicted RBP13.96□□□□□ -0.17
CRLF3-202ENST00000577725 CASZ1Q86V15 1759 aa13.96□□□□□ -0.18
CRLF3-202ENST00000577725 PDE3BQ13370 1112 aa13.95□□□□□ -0.18
CRLF3-202ENST00000577725 GPR162Q16538 588 aa13.95□□□□□ -0.18
CRLF3-202ENST00000577725 AMER1Q5JTC6 1135 aaPredicted RBP13.95□□□□□ -0.18
CRLF3-202ENST00000577725 RTN4Q9NQC3 1192 aaKnown RBP13.95□□□□□ -0.18
CRLF3-202ENST00000577725 ABCA3Q99758 1704 aa13.95□□□□□ -0.18
CRLF3-202ENST00000577725 SPATA31A1Q5TZJ5 1347 aa13.94□□□□□ -0.18
CRLF3-202ENST00000577725 CAPN15O75808 1086 aa13.94□□□□□ -0.18
CRLF3-202ENST00000577725 ANO8Q9HCE9 1232 aaPredicted RBP13.94□□□□□ -0.18
CRLF3-202ENST00000577725 TMF1P82094 1093 aa13.93□□□□□ -0.18
CRLF3-202ENST00000577725 NCBP3Q53F19 620 aaKnown RBP13.93□□□□□ -0.18
CRLF3-202ENST00000577725 COL14A1Q05707 1796 aaKnown RBP13.93□□□□□ -0.18
CRLF3-202ENST00000577725 SHANK3Q9BYB0 1731 aa13.93□□□□□ -0.18
CRLF3-202ENST00000577725 MIER1Q8N108 512 aa13.92□□□□□ -0.18
CRLF3-202ENST00000577725 PRAM1Q96QH2 718 aa13.92□□□□□ -0.18
CRLF3-202ENST00000577725 MAP3K5Q99683 1374 aa13.92□□□□□ -0.18
CRLF3-202ENST00000577725 PLEKHH1Q9ULM0 1364 aa13.92□□□□□ -0.18
CRLF3-202ENST00000577725 KNDC1Q76NI1 1749 aa13.91□□□□□ -0.18
CRLF3-202ENST00000577725 POGKQ9P215 609 aa13.91□□□□□ -0.18
CRLF3-202ENST00000577725 MINK1Q8N4C8 1332 aaPredicted RBP13.9□□□□□ -0.18
CRLF3-202ENST00000577725 PLSCR1O15162 318 aa13.9□□□□□ -0.18
CRLF3-202ENST00000577725 PRELPP51888 382 aa13.9□□□□□ -0.18
CRLF3-202ENST00000577725 WAPLQ7Z5K2 1190 aa13.9□□□□□ -0.18
CRLF3-202ENST00000577725 MTFR1LQ9H019 292 aa13.9□□□□□ -0.18
CRLF3-202ENST00000577725 PHF8Q9UPP1 1060 aa13.9□□□□□ -0.18
CRLF3-202ENST00000577725 ABCC11Q96J66 1382 aa13.89□□□□□ -0.19
CRLF3-202ENST00000577725 ARXQ96QS3 562 aa13.89□□□□□ -0.19
CRLF3-202ENST00000577725 SGIP1Q9BQI5 828 aa13.89□□□□□ -0.19
CRLF3-202ENST00000577725 BCL11BQ9C0K0 894 aaPredicted RBP13.89□□□□□ -0.19
CRLF3-202ENST00000577725 TULP4Q9NRJ4 1543 aa13.89□□□□□ -0.19
CRLF3-202ENST00000577725 SBNO2Q9Y2G9 1366 aa13.87□□□□□ -0.19
CRLF3-202ENST00000577725 BARGINQ6ZT62 677 aa13.87□□□□□ -0.19
CRLF3-202ENST00000577725 PRDM11Q9NQV5 511 aa13.87□□□□□ -0.19
CRLF3-202ENST00000577725 COL13A1Q5TAT6 717 aaPredicted RBP13.86□□□□□ -0.19
CRLF3-202ENST00000577725 PCDH10Q9P2E7 1040 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms