RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 NBPF8Q3BBV2 869 aa22.08■■□□□ 1.13
SF3B3-215ENST00000577085 CCDC9Q9Y3X0 531 aaKnown RBP22.08■■□□□ 1.13
SF3B3-215ENST00000577085 ALS2Q96Q42 1657 aa22.07■■□□□ 1.12
SF3B3-215ENST00000577085 ABCA3Q99758 1704 aa22.07■■□□□ 1.12
SF3B3-215ENST00000577085 UPF1Q92900 1129 aaKnown RBP eCLIP22.07■■□□□ 1.12
SF3B3-215ENST00000577085 POLR3AO14802 1390 aaPredicted RBP22.07■■□□□ 1.12
SF3B3-215ENST00000577085 TOPAZ1Q8N9V7 1692 aa22.07■■□□□ 1.12
SF3B3-215ENST00000577085 CARD11Q9BXL7 1154 aa22.06■■□□□ 1.12
SF3B3-215ENST00000577085 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.06■■□□□ 1.12
SF3B3-215ENST00000577085 FAM83GA6ND36 823 aa22.05■■□□□ 1.12
SF3B3-215ENST00000577085 ATAD2Q6PL18 1390 aa22.03■■□□□ 1.12
SF3B3-215ENST00000577085 NUTM2GQ5VZR2 741 aa22.03■■□□□ 1.12
SF3B3-215ENST00000577085 ABTB2Q8N961 1025 aa22.03■■□□□ 1.12
SF3B3-215ENST00000577085 PRDM11Q9NQV5 511 aa22.03■■□□□ 1.12
SF3B3-215ENST00000577085 PLCH1Q4KWH8 1693 aa22.03■■□□□ 1.12
SF3B3-215ENST00000577085 VPS72Q15906 364 aa22.02■■□□□ 1.12
SF3B3-215ENST00000577085 BTG4Q9NY30 223 aa22.02■■□□□ 1.12
SF3B3-215ENST00000577085 CABP1Q9NZU7 370 aa22.02■■□□□ 1.12
SF3B3-215ENST00000577085 RALGAPBQ86X10 1494 aa22.02■■□□□ 1.12
SF3B3-215ENST00000577085 NWD2Q9ULI1 1742 aa22.01■■□□□ 1.11
SF3B3-215ENST00000577085 COL14A1Q05707 1796 aaKnown RBP21.98■■□□□ 1.11
SF3B3-215ENST00000577085 A0A0G2JS52 829 aa21.98■■□□□ 1.11
SF3B3-215ENST00000577085 MYT1Q01538 1121 aa21.98■■□□□ 1.11
SF3B3-215ENST00000577085 NLRP13Q86W25 1043 aa21.97■■□□□ 1.11
SF3B3-215ENST00000577085 BRD4O60885 1362 aaPredicted RBP21.97■■□□□ 1.11
SF3B3-215ENST00000577085 KIAA0232Q92628 1395 aa21.96■■□□□ 1.11
SF3B3-215ENST00000577085 GLI3P10071 1580 aa21.95■■□□□ 1.11
SF3B3-215ENST00000577085 ZC3H6P61129 1189 aaKnown RBP21.95■■□□□ 1.1
SF3B3-215ENST00000577085 CRYBG1Q9Y4K1 1723 aa21.94■■□□□ 1.1
SF3B3-215ENST00000577085 PCGF6Q9BYE7 350 aa21.94■■□□□ 1.1
SF3B3-215ENST00000577085 USP6P35125 1406 aa21.93■■□□□ 1.1
SF3B3-215ENST00000577085 CHRNA2Q15822 529 aa21.93■■□□□ 1.1
SF3B3-215ENST00000577085 SEPT12Q8IYM1 358 aa21.93■■□□□ 1.1
SF3B3-215ENST00000577085 PHRF1Q9P1Y6 1649 aaKnown RBP21.93■■□□□ 1.1
SF3B3-215ENST00000577085 SBNO2Q9Y2G9 1366 aa21.92■■□□□ 1.1
SF3B3-215ENST00000577085 ZNF692Q9BU19 519 aaPredicted RBP21.92■■□□□ 1.1
SF3B3-215ENST00000577085 EVA1CP58658 441 aa21.91■■□□□ 1.1
SF3B3-215ENST00000577085 NLRP6P59044 892 aa21.91■■□□□ 1.1
SF3B3-215ENST00000577085 STRN4Q9NRL3 753 aa21.91■■□□□ 1.1
SF3B3-215ENST00000577085 NRAPQ86VF7 1730 aa21.9■■□□□ 1.1
SF3B3-215ENST00000577085 FAM98CQ17RN3 349 aaKnown RBP21.9■■□□□ 1.1
SF3B3-215ENST00000577085 USP19O94966 1318 aa21.88■■□□□ 1.09
SF3B3-215ENST00000577085 ZBTB7CA1YPR0 619 aa21.88■■□□□ 1.09
SF3B3-215ENST00000577085 GCP02774 474 aa21.88■■□□□ 1.09
SF3B3-215ENST00000577085 TMC1Q8TDI8 760 aa21.88■■□□□ 1.09
SF3B3-215ENST00000577085 NRKQ7Z2Y5 1582 aa21.87■■□□□ 1.09
SF3B3-215ENST00000577085 ONECUT3O60422 494 aaPredicted RBP21.87■■□□□ 1.09
SF3B3-215ENST00000577085 KRT27Q7Z3Y8 459 aa21.87■■□□□ 1.09
SF3B3-215ENST00000577085 CCDC125Q86Z20 511 aa21.87■■□□□ 1.09
SF3B3-215ENST00000577085 KTN1Q86UP2 1357 aaKnown RBP21.87■■□□□ 1.09
SF3B3-215ENST00000577085 SPATA31A5Q5VU36 1347 aa21.86■■□□□ 1.09
SF3B3-215ENST00000577085 SPATA31A7Q8IWB4 1347 aa21.86■■□□□ 1.09
SF3B3-215ENST00000577085 CPDO75976 1380 aa21.86■■□□□ 1.09
SF3B3-215ENST00000577085 SLC24A1O60721 1099 aa21.85■■□□□ 1.09
SF3B3-215ENST00000577085 TTC21BQ7Z4L5 1316 aa21.84■■□□□ 1.09
SF3B3-215ENST00000577085 SF3B2Q13435 895 aaKnown RBP21.84■■□□□ 1.09
SF3B3-215ENST00000577085 TTC21AQ8NDW8 1320 aa21.83■■□□□ 1.09
SF3B3-215ENST00000577085 HDGFL2Q7Z4V5 671 aaPredicted RBP21.83■■□□□ 1.09
SF3B3-215ENST00000577085 USP35Q9P2H5 1018 aa21.83■■□□□ 1.09
SF3B3-215ENST00000577085 CLSPNQ9HAW4 1339 aa21.82■■□□□ 1.08
SF3B3-215ENST00000577085 ST20-MTHFSA0A0A6YYL1 179 aa21.82■■□□□ 1.08
SF3B3-215ENST00000577085 SPATA31A1Q5TZJ5 1347 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 SSH2Q76I76 1423 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 BRWD3Q6RI45 1802 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 TERF2IPQ9NYB0 399 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 TIMELESSQ9UNS1 1208 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 AKAP12Q02952 1782 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 EP400Q96L91 3159 aa21.81■■□□□ 1.08
SF3B3-215ENST00000577085 CPSF1Q10570 1443 aaKnown RBP21.8■■□□□ 1.08
SF3B3-215ENST00000577085 SOX12O15370 315 aa21.8■■□□□ 1.08
SF3B3-215ENST00000577085 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.8■■□□□ 1.08
SF3B3-215ENST00000577085 KCNH5Q8NCM2 988 aa21.8■■□□□ 1.08
SF3B3-215ENST00000577085 PIK3C2AO00443 1686 aa21.79■■□□□ 1.08
SF3B3-215ENST00000577085 BLMP54132 1417 aaPredicted RBP21.79■■□□□ 1.08
SF3B3-215ENST00000577085 PUS7Q96PZ0 661 aaKnown RBP21.78■■□□□ 1.08
SF3B3-215ENST00000577085 SLC12A5Q9H2X9 1139 aa21.78■■□□□ 1.08
SF3B3-215ENST00000577085 SLIT3O75094 1523 aa21.77■■□□□ 1.08
SF3B3-215ENST00000577085 CAMTA1Q9Y6Y1 1673 aa21.77■■□□□ 1.08
SF3B3-215ENST00000577085 LARP1Q6PKG0 1096 aaKnown RBP21.77■■□□□ 1.08
SF3B3-215ENST00000577085 CCER1Q8TC90 406 aaPredicted RBP21.77■■□□□ 1.08
SF3B3-215ENST00000577085 USP47Q96K76 1375 aa21.76■■□□□ 1.07
SF3B3-215ENST00000577085 AATKQ6ZMQ8 1374 aa21.75■■□□□ 1.07
SF3B3-215ENST00000577085 TMF1P82094 1093 aa21.75■■□□□ 1.07
SF3B3-215ENST00000577085 TESK2Q96S53 571 aa21.75■■□□□ 1.07
SF3B3-215ENST00000577085 LMO7Q8WWI1 1683 aa21.75■■□□□ 1.07
SF3B3-215ENST00000577085 TCP11L2Q8N4U5 519 aa21.74■■□□□ 1.07
SF3B3-215ENST00000577085 MON2Q7Z3U7 1717 aa21.74■■□□□ 1.07
SF3B3-215ENST00000577085 NINLQ9Y2I6 1382 aa21.74■■□□□ 1.07
SF3B3-215ENST00000577085 COL5A2P05997 1499 aaPredicted RBP21.73■■□□□ 1.07
SF3B3-215ENST00000577085 BARGINQ6ZT62 677 aa21.73■■□□□ 1.07
SF3B3-215ENST00000577085 PDE3BQ13370 1112 aa21.72■■□□□ 1.07
SF3B3-215ENST00000577085 THRAP3Q9Y2W1 955 aaKnown RBP21.72■■□□□ 1.07
SF3B3-215ENST00000577085 THSD7AQ9UPZ6 1657 aa21.72■■□□□ 1.07
SF3B3-215ENST00000577085 EDC4Q6P2E9 1401 aaKnown RBP21.72■■□□□ 1.07
SF3B3-215ENST00000577085 CD163L1Q9NR16 1453 aa21.71■■□□□ 1.07
SF3B3-215ENST00000577085 TOM1L2Q6ZVM7 507 aa21.71■■□□□ 1.07
SF3B3-215ENST00000577085 NME9Q86XW9 330 aa21.71■■□□□ 1.07
SF3B3-215ENST00000577085 ZRANB1Q9UGI0 708 aa21.71■■□□□ 1.07
SF3B3-215ENST00000577085 A0A1W2PP64 1363 aa21.71■■□□□ 1.07
SF3B3-215ENST00000577085 CRB1P82279 1406 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms