RNA–Protein interactions for RNA: ENST00000574003.1

RPAIN-214, Transcript of RPA interacting protein, humanhuman

TSL 4 BASIC

Gene RPAIN, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-214ENST00000574003 TOPAZ1Q8N9V7 1692 aa16.27■□□□□ 0.19
RPAIN-214ENST00000574003 GLI3P10071 1580 aa16.26■□□□□ 0.19
RPAIN-214ENST00000574003 CCDC61Q9Y6R9 512 aa16.26■□□□□ 0.19
RPAIN-214ENST00000574003 RALGAPBQ86X10 1494 aa16.26■□□□□ 0.19
RPAIN-214ENST00000574003 PLCH1Q4KWH8 1693 aa16.26■□□□□ 0.19
RPAIN-214ENST00000574003 ROCK2O75116 1388 aaKnown RBP16.26■□□□□ 0.19
RPAIN-214ENST00000574003 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.25■□□□□ 0.19
RPAIN-214ENST00000574003 PLEKHG3A1L390 1219 aa16.24■□□□□ 0.19
RPAIN-214ENST00000574003 POLR3AO14802 1390 aaPredicted RBP16.24■□□□□ 0.19
RPAIN-214ENST00000574003 CRYBG1Q9Y4K1 1723 aa16.23■□□□□ 0.19
RPAIN-214ENST00000574003 PPIP5K1Q6PFW1 1433 aa16.23■□□□□ 0.19
RPAIN-214ENST00000574003 CCDC9Q9Y3X0 531 aaKnown RBP16.23■□□□□ 0.19
RPAIN-214ENST00000574003 BTG4Q9NY30 223 aa16.22■□□□□ 0.19
RPAIN-214ENST00000574003 CHRNA2Q15822 529 aa16.21■□□□□ 0.19
RPAIN-214ENST00000574003 VPS72Q15906 364 aa16.21■□□□□ 0.19
RPAIN-214ENST00000574003 CABP1Q9NZU7 370 aa16.21■□□□□ 0.19
RPAIN-214ENST00000574003 NWD2Q9ULI1 1742 aa16.2■□□□□ 0.18
RPAIN-214ENST00000574003 ZC3H6P61129 1189 aaKnown RBP16.2■□□□□ 0.18
RPAIN-214ENST00000574003 NRAPQ86VF7 1730 aa16.19■□□□□ 0.18
RPAIN-214ENST00000574003 BRWD3Q6RI45 1802 aa16.19■□□□□ 0.18
RPAIN-214ENST00000574003 ATAD2Q6PL18 1390 aa16.19■□□□□ 0.18
RPAIN-214ENST00000574003 TONSLQ96HA7 1378 aa16.19■□□□□ 0.18
RPAIN-214ENST00000574003 PRDM11Q9NQV5 511 aa16.19■□□□□ 0.18
RPAIN-214ENST00000574003 KIAA0232Q92628 1395 aa16.18■□□□□ 0.18
RPAIN-214ENST00000574003 SEPT12Q8IYM1 358 aa16.18■□□□□ 0.18
RPAIN-214ENST00000574003 ABTB2Q8N961 1025 aa16.18■□□□□ 0.18
RPAIN-214ENST00000574003 PHRF1Q9P1Y6 1649 aaKnown RBP16.18■□□□□ 0.18
RPAIN-214ENST00000574003 COL14A1Q05707 1796 aaKnown RBP16.18■□□□□ 0.18
RPAIN-214ENST00000574003 EVC2Q86UK5 1308 aa16.18■□□□□ 0.18
RPAIN-214ENST00000574003 CARD11Q9BXL7 1154 aa16.17■□□□□ 0.18
RPAIN-214ENST00000574003 FAM98CQ17RN3 349 aaKnown RBP16.16■□□□□ 0.18
RPAIN-214ENST00000574003 A0A0G2JS52 829 aa16.15■□□□□ 0.18
RPAIN-214ENST00000574003 MYT1Q01538 1121 aa16.15■□□□□ 0.18
RPAIN-214ENST00000574003 EP400Q96L91 3159 aa16.15■□□□□ 0.18
RPAIN-214ENST00000574003 STRN4Q9NRL3 753 aa16.14■□□□□ 0.17
RPAIN-214ENST00000574003 NRKQ7Z2Y5 1582 aa16.13■□□□□ 0.17
RPAIN-214ENST00000574003 USP6P35125 1406 aa16.13■□□□□ 0.17
RPAIN-214ENST00000574003 USP19O94966 1318 aa16.13■□□□□ 0.17
RPAIN-214ENST00000574003 ZBTB7CA1YPR0 619 aa16.12■□□□□ 0.17
RPAIN-214ENST00000574003 ONECUT3O60422 494 aaPredicted RBP16.12■□□□□ 0.17
RPAIN-214ENST00000574003 SPATA31A5Q5VU36 1347 aa16.12■□□□□ 0.17
RPAIN-214ENST00000574003 SPATA31A7Q8IWB4 1347 aa16.12■□□□□ 0.17
RPAIN-214ENST00000574003 FAM182BQ5T319 152 aa16.11■□□□□ 0.17
RPAIN-214ENST00000574003 GCP02774 474 aa16.1■□□□□ 0.17
RPAIN-214ENST00000574003 NLRP6P59044 892 aa16.1■□□□□ 0.17
RPAIN-214ENST00000574003 NLRP13Q86W25 1043 aa16.1■□□□□ 0.17
RPAIN-214ENST00000574003 SSH2Q76I76 1423 aa16.1■□□□□ 0.17
RPAIN-214ENST00000574003 CAMTA1Q9Y6Y1 1673 aa16.09■□□□□ 0.17
RPAIN-214ENST00000574003 KRT27Q7Z3Y8 459 aa16.09■□□□□ 0.17
RPAIN-214ENST00000574003 USP35Q9P2H5 1018 aa16.09■□□□□ 0.17
RPAIN-214ENST00000574003 PIK3C2AO00443 1686 aa16.08■□□□□ 0.17
RPAIN-214ENST00000574003 SOX12O15370 315 aa16.08■□□□□ 0.16
RPAIN-214ENST00000574003 PCGF6Q9BYE7 350 aa16.08■□□□□ 0.16
RPAIN-214ENST00000574003 SPATA31A1Q5TZJ5 1347 aa16.08■□□□□ 0.16
RPAIN-214ENST00000574003 TTC21BQ7Z4L5 1316 aa16.08■□□□□ 0.16
RPAIN-214ENST00000574003 AKAP12Q02952 1782 aa16.08■□□□□ 0.16
RPAIN-214ENST00000574003 EVA1CP58658 441 aa16.07■□□□□ 0.16
RPAIN-214ENST00000574003 LARP1Q6PKG0 1096 aaKnown RBP16.07■□□□□ 0.16
RPAIN-214ENST00000574003 DEFB132Q7Z7B7 95 aa16.07■□□□□ 0.16
RPAIN-214ENST00000574003 ZRANB1Q9UGI0 708 aa16.07■□□□□ 0.16
RPAIN-214ENST00000574003 LMO7Q8WWI1 1683 aa16.06■□□□□ 0.16
RPAIN-214ENST00000574003 TMC1Q8TDI8 760 aa16.06■□□□□ 0.16
RPAIN-214ENST00000574003 CPSF1Q10570 1443 aaKnown RBP16.05■□□□□ 0.16
RPAIN-214ENST00000574003 CPDO75976 1380 aa16.05■□□□□ 0.16
RPAIN-214ENST00000574003 SBNO2Q9Y2G9 1366 aa16.05■□□□□ 0.16
RPAIN-214ENST00000574003 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.05■□□□□ 0.16
RPAIN-214ENST00000574003 SLC12A5Q9H2X9 1139 aa16.05■□□□□ 0.16
RPAIN-214ENST00000574003 SLIT3O75094 1523 aa16.04■□□□□ 0.16
RPAIN-214ENST00000574003 BRD4O60885 1362 aaPredicted RBP16.04■□□□□ 0.16
RPAIN-214ENST00000574003 KTN1Q86UP2 1357 aaKnown RBP16.04■□□□□ 0.16
RPAIN-214ENST00000574003 ST20-MTHFSA0A0A6YYL1 179 aa16.04■□□□□ 0.16
RPAIN-214ENST00000574003 THSD7AQ9UPZ6 1657 aa16.04■□□□□ 0.16
RPAIN-214ENST00000574003 CD163L1Q9NR16 1453 aa16.03■□□□□ 0.16
RPAIN-214ENST00000574003 BLMP54132 1417 aaPredicted RBP16.03■□□□□ 0.16
RPAIN-214ENST00000574003 TESK2Q96S53 571 aa16.03■□□□□ 0.16
RPAIN-214ENST00000574003 ZNF692Q9BU19 519 aaPredicted RBP16.03■□□□□ 0.16
RPAIN-214ENST00000574003 NME9Q86XW9 330 aa16.02■□□□□ 0.16
RPAIN-214ENST00000574003 CCDC125Q86Z20 511 aa16.01■□□□□ 0.15
RPAIN-214ENST00000574003 AXIN2Q9Y2T1 843 aa16.01■□□□□ 0.15
RPAIN-214ENST00000574003 MON2Q7Z3U7 1717 aa16.01■□□□□ 0.15
RPAIN-214ENST00000574003 COL5A2P05997 1499 aaPredicted RBP16.01■□□□□ 0.15
RPAIN-214ENST00000574003 COL18A1P39060 1754 aa16■□□□□ 0.15
RPAIN-214ENST00000574003 TTC21AQ8NDW8 1320 aa15.99■□□□□ 0.15
RPAIN-214ENST00000574003 TCP11L2Q8N4U5 519 aa15.99■□□□□ 0.15
RPAIN-214ENST00000574003 RGPD5Q99666 1765 aa15.99■□□□□ 0.15
RPAIN-214ENST00000574003 SF3B2Q13435 895 aaKnown RBP15.98■□□□□ 0.15
RPAIN-214ENST00000574003 ARHGEF25Q86VW2 580 aa15.98■□□□□ 0.15
RPAIN-214ENST00000574003 A0A1W2PP64 1363 aa15.98■□□□□ 0.15
RPAIN-214ENST00000574003 AATKQ6ZMQ8 1374 aa15.98■□□□□ 0.15
RPAIN-214ENST00000574003 BARGINQ6ZT62 677 aa15.97■□□□□ 0.15
RPAIN-214ENST00000574003 HDGFL2Q7Z4V5 671 aaPredicted RBP15.97■□□□□ 0.15
RPAIN-214ENST00000574003 USP47Q96K76 1375 aa15.97■□□□□ 0.15
RPAIN-214ENST00000574003 NFAT5O94916 1531 aa15.96■□□□□ 0.15
RPAIN-214ENST00000574003 TRIM37O94972 964 aa15.95■□□□□ 0.14
RPAIN-214ENST00000574003 EN1Q05925 392 aaPredicted RBP15.95■□□□□ 0.14
RPAIN-214ENST00000574003 TOM1L2Q6ZVM7 507 aa15.95■□□□□ 0.14
RPAIN-214ENST00000574003 CRB1P82279 1406 aa15.94■□□□□ 0.14
RPAIN-214ENST00000574003 PDE3BQ13370 1112 aa15.94■□□□□ 0.14
RPAIN-214ENST00000574003 KCNH5Q8NCM2 988 aa15.94■□□□□ 0.14
RPAIN-214ENST00000574003 USP31Q70CQ4 1352 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms