RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 PRR36Q9H6K5 1346 aa29.42■■■□□ 2.3
CCDC40-206ENST00000572083 TULP4Q9NRJ4 1543 aa29.41■■■□□ 2.3
CCDC40-206ENST00000572083 ACIN1Q9UKV3 1341 aaKnown RBP29.41■■■□□ 2.3
CCDC40-206ENST00000572083 HRCP23327 699 aa29.4■■■□□ 2.3
CCDC40-206ENST00000572083 EN1Q05925 392 aaPredicted RBP29.39■■■□□ 2.3
CCDC40-206ENST00000572083 THSD7AQ9UPZ6 1657 aa29.38■■■□□ 2.29
CCDC40-206ENST00000572083 EIF3AQ14152 1382 aaKnown RBP29.38■■■□□ 2.29
CCDC40-206ENST00000572083 SPATA31A5Q5VU36 1347 aa29.37■■■□□ 2.29
CCDC40-206ENST00000572083 SPATA31A7Q8IWB4 1347 aa29.37■■■□□ 2.29
CCDC40-206ENST00000572083 TNS1Q9HBL0 1735 aaKnown RBP29.36■■■□□ 2.29
CCDC40-206ENST00000572083 PAK3O75914 559 aaPredicted RBP29.34■■■□□ 2.29
CCDC40-206ENST00000572083 NGDNQ8NEJ9 315 aaKnown RBP29.33■■■□□ 2.29
CCDC40-206ENST00000572083 PRDM11Q9NQV5 511 aa29.33■■■□□ 2.29
CCDC40-206ENST00000572083 WASLO00401 505 aaPredicted RBP29.32■■■□□ 2.28
CCDC40-206ENST00000572083 R3HDM1Q15032 1099 aaKnown RBP29.31■■■□□ 2.28
CCDC40-206ENST00000572083 DISP2A7MBM2 1401 aa29.29■■■□□ 2.28
CCDC40-206ENST00000572083 KDM2AQ9Y2K7 1162 aa29.29■■■□□ 2.28
CCDC40-206ENST00000572083 PHRF1Q9P1Y6 1649 aaKnown RBP29.28■■■□□ 2.28
CCDC40-206ENST00000572083 ITSN1Q15811 1721 aa29.28■■■□□ 2.28
CCDC40-206ENST00000572083 ATP7BP35670 1465 aa29.27■■■□□ 2.28
CCDC40-206ENST00000572083 KIAA0232Q92628 1395 aa29.26■■■□□ 2.28
CCDC40-206ENST00000572083 RAB3GAP2Q9H2M9 1393 aa29.26■■■□□ 2.28
CCDC40-206ENST00000572083 EZH2Q15910 746 aaKnown RBP29.26■■■□□ 2.27
CCDC40-206ENST00000572083 ARHGEF28Q8N1W1 1705 aaKnown RBP29.25■■■□□ 2.27
CCDC40-206ENST00000572083 CHRNA2Q15822 529 aa29.25■■■□□ 2.27
CCDC40-206ENST00000572083 DCAF11Q8TEB1 546 aa29.25■■■□□ 2.27
CCDC40-206ENST00000572083 SPATA31A1Q5TZJ5 1347 aa29.24■■■□□ 2.27
CCDC40-206ENST00000572083 STRN4Q9NRL3 753 aa29.23■■■□□ 2.27
CCDC40-206ENST00000572083 TRIM37O94972 964 aa29.21■■■□□ 2.27
CCDC40-206ENST00000572083 ZC3H6P61129 1189 aaKnown RBP29.19■■■□□ 2.26
CCDC40-206ENST00000572083 NUTM2GQ5VZR2 741 aa29.19■■■□□ 2.26
CCDC40-206ENST00000572083 NUDT16Q96DE0 195 aaKnown RBP29.19■■■□□ 2.26
CCDC40-206ENST00000572083 CAMKK2Q96RR4 588 aa29.18■■■□□ 2.26
CCDC40-206ENST00000572083 USP35Q9P2H5 1018 aa29.18■■■□□ 2.26
CCDC40-206ENST00000572083 FAM196AQ6ZSG2 479 aa29.17■■■□□ 2.26
CCDC40-206ENST00000572083 TOPAZ1Q8N9V7 1692 aa29.15■■■□□ 2.26
CCDC40-206ENST00000572083 NRKQ7Z2Y5 1582 aa29.14■■■□□ 2.26
CCDC40-206ENST00000572083 APBA3O96018 575 aa29.14■■■□□ 2.26
CCDC40-206ENST00000572083 RREB1Q92766 1687 aa29.14■■■□□ 2.26
CCDC40-206ENST00000572083 SSH2Q76I76 1423 aa29.13■■■□□ 2.25
CCDC40-206ENST00000572083 CDK19Q9BWU1 502 aa29.11■■■□□ 2.25
CCDC40-206ENST00000572083 POLR3AO14802 1390 aaPredicted RBP29.11■■■□□ 2.25
CCDC40-206ENST00000572083 PARD3Q8TEW0 1356 aa29.11■■■□□ 2.25
CCDC40-206ENST00000572083 NUP188Q5SRE5 1749 aa29.11■■■□□ 2.25
CCDC40-206ENST00000572083 ACEP12821 1306 aa29.1■■■□□ 2.25
CCDC40-206ENST00000572083 CAMTA1Q9Y6Y1 1673 aa29.09■■■□□ 2.25
CCDC40-206ENST00000572083 EVA1CP58658 441 aa29.09■■■□□ 2.25
CCDC40-206ENST00000572083 PDE3BQ13370 1112 aa29.08■■■□□ 2.25
CCDC40-206ENST00000572083 LMO7Q8WWI1 1683 aa29.08■■■□□ 2.25
CCDC40-206ENST00000572083 LARP1Q6PKG0 1096 aaKnown RBP29.07■■■□□ 2.24
CCDC40-206ENST00000572083 BARGINQ6ZT62 677 aa29.07■■■□□ 2.24
CCDC40-206ENST00000572083 STAC3Q96MF2 364 aa29.07■■■□□ 2.24
CCDC40-206ENST00000572083 NBPF8Q3BBV2 869 aa29.06■■■□□ 2.24
CCDC40-206ENST00000572083 ABTB2Q8N961 1025 aa29.04■■■□□ 2.24
CCDC40-206ENST00000572083 CCDC61Q9Y6R9 512 aa29.03■■■□□ 2.24
CCDC40-206ENST00000572083 CPDO75976 1380 aa29.02■■■□□ 2.24
CCDC40-206ENST00000572083 TCP11L2Q8N4U5 519 aa29.02■■■□□ 2.24
CCDC40-206ENST00000572083 USP19O94966 1318 aa29.01■■■□□ 2.23
CCDC40-206ENST00000572083 PLEKHG3A1L390 1219 aa29■■■□□ 2.23
CCDC40-206ENST00000572083 PARP4Q9UKK3 1724 aaKnown RBP28.99■■■□□ 2.23
CCDC40-206ENST00000572083 COL5A2P05997 1499 aaPredicted RBP28.97■■■□□ 2.23
CCDC40-206ENST00000572083 NBPF14Q5TI25 921 aa28.97■■■□□ 2.23
CCDC40-206ENST00000572083 KIAA1210Q9ULL0 1709 aa28.97■■■□□ 2.23
CCDC40-206ENST00000572083 PPIP5K1Q6PFW1 1433 aa28.95■■■□□ 2.23
CCDC40-206ENST00000572083 THRAP3Q9Y2W1 955 aaKnown RBP28.95■■■□□ 2.22
CCDC40-206ENST00000572083 GCP02774 474 aa28.94■■■□□ 2.22
CCDC40-206ENST00000572083 NLRP13Q86W25 1043 aa28.93■■■□□ 2.22
CCDC40-206ENST00000572083 ZBTB7CA1YPR0 619 aa28.92■■■□□ 2.22
CCDC40-206ENST00000572083 SRPK2P78362 688 aaKnown RBP28.92■■■□□ 2.22
CCDC40-206ENST00000572083 YY1P25490 414 aa28.91■■■□□ 2.22
CCDC40-206ENST00000572083 CRB1P82279 1406 aa28.91■■■□□ 2.22
CCDC40-206ENST00000572083 PEAK1Q9H792 1746 aa28.91■■■□□ 2.22
CCDC40-206ENST00000572083 LRRC37A3O60309 1634 aa28.91■■■□□ 2.22
CCDC40-206ENST00000572083 OVOS2A0A0G2JMS6 1433 aa28.9■■■□□ 2.22
CCDC40-206ENST00000572083 OVOS2A0A0J9YW53 1432 aa28.9■■■□□ 2.22
CCDC40-206ENST00000572083 NBPF1Q3BBV0 1214 aa28.9■■■□□ 2.22
CCDC40-206ENST00000572083 OVOS2Q6IE36 1432 aa28.9■■■□□ 2.22
CCDC40-206ENST00000572083 PPP1R1BQ9UD71 204 aaPredicted RBP28.89■■■□□ 2.22
CCDC40-206ENST00000572083 SPON1Q9HCB6 807 aa28.88■■■□□ 2.21
CCDC40-206ENST00000572083 CABP2Q9NPB3 220 aa28.88■■■□□ 2.21
CCDC40-206ENST00000572083 KCNQ2O43526 872 aa28.86■■■□□ 2.21
CCDC40-206ENST00000572083 RGPD3A6NKT7 1758 aaPredicted RBP28.85■■■□□ 2.21
CCDC40-206ENST00000572083 RGPD4Q7Z3J3 1758 aa28.85■■■□□ 2.21
CCDC40-206ENST00000572083 QRICH2Q9H0J4 1663 aa28.85■■■□□ 2.21
CCDC40-206ENST00000572083 CENPJQ9HC77 1338 aaPredicted RBP28.85■■■□□ 2.21
CCDC40-206ENST00000572083 SBF2Q86WG5 1849 aa28.85■■■□□ 2.21
CCDC40-206ENST00000572083 SLIT3O75094 1523 aa28.84■■■□□ 2.21
CCDC40-206ENST00000572083 USP6P35125 1406 aa28.84■■■□□ 2.21
CCDC40-206ENST00000572083 C11orf95C9JLR9 678 aaPredicted RBP28.82■■■□□ 2.2
CCDC40-206ENST00000572083 NLRP6P59044 892 aa28.82■■■□□ 2.2
CCDC40-206ENST00000572083 BRD4O60885 1362 aaPredicted RBP28.82■■■□□ 2.2
CCDC40-206ENST00000572083 AATKQ6ZMQ8 1374 aa28.82■■■□□ 2.2
CCDC40-206ENST00000572083 WNK3Q9BYP7 1800 aa28.82■■■□□ 2.2
CCDC40-206ENST00000572083 PIK3C2AO00443 1686 aa28.81■■■□□ 2.2
CCDC40-206ENST00000572083 NINLQ9Y2I6 1382 aa28.81■■■□□ 2.2
CCDC40-206ENST00000572083 DDB1Q16531 1140 aa28.81■■■□□ 2.2
CCDC40-206ENST00000572083 ANO8Q9HCE9 1232 aaPredicted RBP28.81■■■□□ 2.2
CCDC40-206ENST00000572083 TOM1L2Q6ZVM7 507 aa28.8■■■□□ 2.2
CCDC40-206ENST00000572083 PTF1AQ7RTS3 328 aa28.79■■■□□ 2.2
CCDC40-206ENST00000572083 CABP1Q9NZU7 370 aa28.79■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms