RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 CHIC2Q9UKJ5 165 aa11.04□□□□□ -0.64
CHD3-213ENST00000571249 APLP1P51693 650 aa11.03□□□□□ -0.64
CHD3-213ENST00000571249 CNKSR2Q8WXI2 1034 aa11.03□□□□□ -0.64
CHD3-213ENST00000571249 ABCC5O15440 1437 aa11.02□□□□□ -0.64
CHD3-213ENST00000571249 PDE3BQ13370 1112 aa11.02□□□□□ -0.65
CHD3-213ENST00000571249 PTF1AQ7RTS3 328 aa11.02□□□□□ -0.65
CHD3-213ENST00000571249 MTFR1LQ9H019 292 aa11.02□□□□□ -0.65
CHD3-213ENST00000571249 YBX3P16989 372 aaKnown RBP eCLIP11.01□□□□□ -0.65
CHD3-213ENST00000571249 HTRA3P83110 453 aa11.01□□□□□ -0.65
CHD3-213ENST00000571249 KLHL34Q8N239 644 aa11.01□□□□□ -0.65
CHD3-213ENST00000571249 WWC3Q9ULE0 1092 aa11.01□□□□□ -0.65
CHD3-213ENST00000571249 SPATA31A1Q5TZJ5 1347 aa11.01□□□□□ -0.65
CHD3-213ENST00000571249 ZNF326Q5BKZ1 582 aaKnown RBP11□□□□□ -0.65
CHD3-213ENST00000571249 USP35Q9P2H5 1018 aa11□□□□□ -0.65
CHD3-213ENST00000571249 MYOM3Q5VTT5 1437 aa11□□□□□ -0.65
CHD3-213ENST00000571249 MAP3K5Q99683 1374 aa10.99□□□□□ -0.65
CHD3-213ENST00000571249 TNS3Q68CZ2 1445 aa10.99□□□□□ -0.65
CHD3-213ENST00000571249 KIF3CO14782 793 aa10.98□□□□□ -0.65
CHD3-213ENST00000571249 PLSCR1O15162 318 aa10.98□□□□□ -0.65
CHD3-213ENST00000571249 NLGN2Q8NFZ4 835 aa10.98□□□□□ -0.65
CHD3-213ENST00000571249 SLC15A2Q16348 729 aa10.97□□□□□ -0.65
CHD3-213ENST00000571249 JMYQ8N9B5 988 aa10.97□□□□□ -0.65
CHD3-213ENST00000571249 CCDC144AA2RUR9 1427 aa10.97□□□□□ -0.65
CHD3-213ENST00000571249 ABCA3Q99758 1704 aa10.96□□□□□ -0.65
CHD3-213ENST00000571249 KLRG1Q96E93 195 aa10.96□□□□□ -0.65
CHD3-213ENST00000571249 STRN4Q9NRL3 753 aa10.96□□□□□ -0.65
CHD3-213ENST00000571249 STK32BQ9NY57 414 aa10.96□□□□□ -0.65
CHD3-213ENST00000571249 NEXMIFQ5QGS0 1516 aa10.95□□□□□ -0.66
CHD3-213ENST00000571249 TECPR2O15040 1411 aa10.95□□□□□ -0.66
CHD3-213ENST00000571249 PSME1Q06323 249 aa10.95□□□□□ -0.66
CHD3-213ENST00000571249 WAPLQ7Z5K2 1190 aa10.95□□□□□ -0.66
CHD3-213ENST00000571249 HFM1A2PYH4 1435 aa10.94□□□□□ -0.66
CHD3-213ENST00000571249 NAIPQ13075 1403 aa10.94□□□□□ -0.66
CHD3-213ENST00000571249 GRIN3BO60391 1043 aa10.93□□□□□ -0.66
CHD3-213ENST00000571249 CHRNA2Q15822 529 aa10.93□□□□□ -0.66
CHD3-213ENST00000571249 CDC42BPGQ6DT37 1551 aa10.93□□□□□ -0.66
CHD3-213ENST00000571249 RRBP1Q9P2E9 1410 aaKnown RBP10.92□□□□□ -0.66
CHD3-213ENST00000571249 ANKRD30AQ9BXX3 1397 aa10.92□□□□□ -0.66
CHD3-213ENST00000571249 CROCC2H7BZ55 1655 aa10.92□□□□□ -0.66
CHD3-213ENST00000571249 PHF8Q9UPP1 1060 aa10.92□□□□□ -0.66
CHD3-213ENST00000571249 COL14A1Q05707 1796 aaKnown RBP10.92□□□□□ -0.66
CHD3-213ENST00000571249 SBNO1A3KN83 1393 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 ARHGEF10O15013 1369 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 ADCY9O60503 1353 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 FAM161AQ3B820 660 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 BARGINQ6ZT62 677 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 PRDM11Q9NQV5 511 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 DAPK1P53355 1430 aa10.91□□□□□ -0.66
CHD3-213ENST00000571249 E9PCH4 1651 aa10.9□□□□□ -0.66
CHD3-213ENST00000571249 TXNRD1Q16881 649 aa10.9□□□□□ -0.66
CHD3-213ENST00000571249 KANK4Q5T7N3 995 aaPredicted RBP10.9□□□□□ -0.66
CHD3-213ENST00000571249 PLEKHH1Q9ULM0 1364 aa10.89□□□□□ -0.67
CHD3-213ENST00000571249 IQGAP3Q86VI3 1631 aa10.88□□□□□ -0.67
CHD3-213ENST00000571249 LARP1Q6PKG0 1096 aaKnown RBP10.88□□□□□ -0.67
CHD3-213ENST00000571249 TNS2Q63HR2 1409 aa10.87□□□□□ -0.67
CHD3-213ENST00000571249 PRAG1Q86YV5 1406 aa10.87□□□□□ -0.67
CHD3-213ENST00000571249 PMFBP1Q8TBY8 1022 aa10.87□□□□□ -0.67
CHD3-213ENST00000571249 STK26Q9P289 416 aa10.87□□□□□ -0.67
CHD3-213ENST00000571249 TOMM70O94826 608 aa10.86□□□□□ -0.67
CHD3-213ENST00000571249 HSPA1AP0DMV8 641 aaKnown RBP10.86□□□□□ -0.67
CHD3-213ENST00000571249 HSPA1BP0DMV9 641 aaKnown RBP10.86□□□□□ -0.67
CHD3-213ENST00000571249 TCP11L2Q8N4U5 519 aa10.86□□□□□ -0.67
CHD3-213ENST00000571249 KIAA0232Q92628 1395 aa10.86□□□□□ -0.67
CHD3-213ENST00000571249 KIF1AQ12756 1690 aa10.85□□□□□ -0.67
CHD3-213ENST00000571249 EVA1CP58658 441 aa10.85□□□□□ -0.67
CHD3-213ENST00000571249 AATKQ6ZMQ8 1374 aa10.85□□□□□ -0.67
CHD3-213ENST00000571249 RGPD3A6NKT7 1758 aaPredicted RBP10.85□□□□□ -0.67
CHD3-213ENST00000571249 RGPD4Q7Z3J3 1758 aa10.85□□□□□ -0.67
CHD3-213ENST00000571249 ANKRD50Q9ULJ7 1429 aa10.84□□□□□ -0.67
CHD3-213ENST00000571249 ZC3H6P61129 1189 aaKnown RBP10.84□□□□□ -0.67
CHD3-213ENST00000571249 WDR90Q96KV7 1748 aa10.84□□□□□ -0.67
CHD3-213ENST00000571249 RGPD8O14715 1765 aaPredicted RBP10.83□□□□□ -0.68
CHD3-213ENST00000571249 ZNF827Q17R98 1081 aa10.83□□□□□ -0.68
CHD3-213ENST00000571249 OVOS2A0A0G2JMS6 1433 aa10.83□□□□□ -0.68
CHD3-213ENST00000571249 OVOS2A0A0J9YW53 1432 aa10.83□□□□□ -0.68
CHD3-213ENST00000571249 OVOS2Q6IE36 1432 aa10.83□□□□□ -0.68
CHD3-213ENST00000571249 NRXN1Q9ULB1 1477 aa10.82□□□□□ -0.68
CHD3-213ENST00000571249 PEAK1Q9H792 1746 aa10.82□□□□□ -0.68
CHD3-213ENST00000571249 POLD1P28340 1107 aa10.82□□□□□ -0.68
CHD3-213ENST00000571249 SSH2Q76I76 1423 aa10.82□□□□□ -0.68
CHD3-213ENST00000571249 SBF2Q86WG5 1849 aa10.81□□□□□ -0.68
CHD3-213ENST00000571249 FMN2Q9NZ56 1722 aa10.81□□□□□ -0.68
CHD3-213ENST00000571249 FKBP8Q14318 412 aa10.81□□□□□ -0.68
CHD3-213ENST00000571249 C11orf95C9JLR9 678 aaPredicted RBP10.8□□□□□ -0.68
CHD3-213ENST00000571249 VGFO15240 615 aaPredicted RBP10.8□□□□□ -0.68
CHD3-213ENST00000571249 MARCH10Q8NA82 808 aaPredicted RBP10.8□□□□□ -0.68
CHD3-213ENST00000571249 DHX57Q6P158 1386 aaKnown RBP10.79□□□□□ -0.68
CHD3-213ENST00000571249 NMRK2Q9NPI5 230 aa10.79□□□□□ -0.68
CHD3-213ENST00000571249 TMEM132EQ6IEE7 984 aa10.78□□□□□ -0.68
CHD3-213ENST00000571249 PAK3O75914 559 aaPredicted RBP10.77□□□□□ -0.69
CHD3-213ENST00000571249 ATP7BP35670 1465 aa10.76□□□□□ -0.69
CHD3-213ENST00000571249 TRPM3Q9HCF6 1732 aaPredicted RBP10.76□□□□□ -0.69
CHD3-213ENST00000571249 DDB1Q16531 1140 aa10.76□□□□□ -0.69
CHD3-213ENST00000571249 NUTM2GQ5VZR2 741 aa10.76□□□□□ -0.69
CHD3-213ENST00000571249 THRAP3Q9Y2W1 955 aaKnown RBP10.76□□□□□ -0.69
CHD3-213ENST00000571249 NUP155O75694 1391 aa10.76□□□□□ -0.69
CHD3-213ENST00000571249 ALS2Q96Q42 1657 aa10.76□□□□□ -0.69
CHD3-213ENST00000571249 RBM46Q8TBY0 533 aaKnown RBP10.75□□□□□ -0.69
CHD3-213ENST00000571249 SLC16A10Q8TF71 515 aa10.75□□□□□ -0.69
CHD3-213ENST00000571249 LRRC4BQ9NT99 713 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms