RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 KCNQ2O43526 872 aa16.57■□□□□ 0.24
VPS53-207ENST00000570510 USP35Q9P2H5 1018 aa16.57■□□□□ 0.24
VPS53-207ENST00000570510 DHX57Q6P158 1386 aaKnown RBP16.56■□□□□ 0.24
VPS53-207ENST00000570510 EVA1CP58658 441 aa16.56■□□□□ 0.24
VPS53-207ENST00000570510 PRAM1Q96QH2 718 aa16.56■□□□□ 0.24
VPS53-207ENST00000570510 NGDNQ8NEJ9 315 aaKnown RBP16.55■□□□□ 0.24
VPS53-207ENST00000570510 COL14A1Q05707 1796 aaKnown RBP16.55■□□□□ 0.24
VPS53-207ENST00000570510 NINLQ9Y2I6 1382 aa16.54■□□□□ 0.24
VPS53-207ENST00000570510 SPATA31A1Q5TZJ5 1347 aa16.54■□□□□ 0.24
VPS53-207ENST00000570510 ABCA3Q99758 1704 aa16.53■□□□□ 0.24
VPS53-207ENST00000570510 RGPD8O14715 1765 aaPredicted RBP16.53■□□□□ 0.24
VPS53-207ENST00000570510 NRAPQ86VF7 1730 aa16.53■□□□□ 0.24
VPS53-207ENST00000570510 SENP3-EIF4A1A0A087X0R7 540 aa16.52■□□□□ 0.24
VPS53-207ENST00000570510 KNDC1Q76NI1 1749 aa16.52■□□□□ 0.24
VPS53-207ENST00000570510 TNS1Q9HBL0 1735 aaKnown RBP16.52■□□□□ 0.24
VPS53-207ENST00000570510 IFT172Q9UG01 1749 aa16.51■□□□□ 0.23
VPS53-207ENST00000570510 CHRNA2Q15822 529 aa16.51■□□□□ 0.23
VPS53-207ENST00000570510 PIK3C2GO75747 1445 aa16.51■□□□□ 0.23
VPS53-207ENST00000570510 ANKARQ7Z5J8 1434 aa16.51■□□□□ 0.23
VPS53-207ENST00000570510 ACIN1Q9UKV3 1341 aaKnown RBP16.5■□□□□ 0.23
VPS53-207ENST00000570510 HIRIP3Q9BW71 556 aaPredicted RBP16.5■□□□□ 0.23
VPS53-207ENST00000570510 C14orf93Q9H972 538 aaKnown RBP16.5■□□□□ 0.23
VPS53-207ENST00000570510 ZC3H6P61129 1189 aaKnown RBP16.49■□□□□ 0.23
VPS53-207ENST00000570510 CFAP70Q5T0N1 1121 aa16.49■□□□□ 0.23
VPS53-207ENST00000570510 THSD7AQ9UPZ6 1657 aa16.49■□□□□ 0.23
VPS53-207ENST00000570510 EIF3AQ14152 1382 aaKnown RBP16.49■□□□□ 0.23
VPS53-207ENST00000570510 ZNF784Q8NCA9 323 aaPredicted RBP16.48■□□□□ 0.23
VPS53-207ENST00000570510 KIAA0232Q92628 1395 aa16.48■□□□□ 0.23
VPS53-207ENST00000570510 SPATA31E1Q6ZUB1 1445 aa16.46■□□□□ 0.23
VPS53-207ENST00000570510 C11orf95C9JLR9 678 aaPredicted RBP16.46■□□□□ 0.23
VPS53-207ENST00000570510 BARGINQ6ZT62 677 aa16.46■□□□□ 0.23
VPS53-207ENST00000570510 MINK1Q8N4C8 1332 aaPredicted RBP16.45■□□□□ 0.22
VPS53-207ENST00000570510 TCP11L2Q8N4U5 519 aa16.45■□□□□ 0.22
VPS53-207ENST00000570510 NUTM2GQ5VZR2 741 aa16.44■□□□□ 0.22
VPS53-207ENST00000570510 TRAK1Q9UPV9 953 aa16.44■□□□□ 0.22
VPS53-207ENST00000570510 BCL11BQ9C0K0 894 aaPredicted RBP16.43■□□□□ 0.22
VPS53-207ENST00000570510 IFFO2Q5TF58 517 aa16.42■□□□□ 0.22
VPS53-207ENST00000570510 WASLO00401 505 aaPredicted RBP16.41■□□□□ 0.22
VPS53-207ENST00000570510 ZBTB7AO95365 584 aa16.41■□□□□ 0.22
VPS53-207ENST00000570510 C1QTNF8P60827 252 aa16.41■□□□□ 0.22
VPS53-207ENST00000570510 LARP1Q6PKG0 1096 aaKnown RBP16.41■□□□□ 0.22
VPS53-207ENST00000570510 MPHOSPH9Q99550 1183 aa16.41■□□□□ 0.22
VPS53-207ENST00000570510 NUP188Q5SRE5 1749 aa16.41■□□□□ 0.22
VPS53-207ENST00000570510 TRPM3Q9HCF6 1732 aaPredicted RBP16.41■□□□□ 0.22
VPS53-207ENST00000570510 RREB1Q92766 1687 aa16.4■□□□□ 0.22
VPS53-207ENST00000570510 ALS2Q96Q42 1657 aa16.4■□□□□ 0.22
VPS53-207ENST00000570510 THRAP3Q9Y2W1 955 aaKnown RBP16.4■□□□□ 0.22
VPS53-207ENST00000570510 PRR36Q9H6K5 1346 aa16.4■□□□□ 0.22
VPS53-207ENST00000570510 SSH2Q76I76 1423 aa16.39■□□□□ 0.21
VPS53-207ENST00000570510 PLSCR1O15162 318 aa16.38■□□□□ 0.21
VPS53-207ENST00000570510 ATF5Q9Y2D1 282 aaPredicted RBP16.38■□□□□ 0.21
VPS53-207ENST00000570510 CAMTA1Q9Y6Y1 1673 aa16.37■□□□□ 0.21
VPS53-207ENST00000570510 DLC1Q96QB1 1528 aa16.36■□□□□ 0.21
VPS53-207ENST00000570510 TULP4Q9NRJ4 1543 aa16.36■□□□□ 0.21
VPS53-207ENST00000570510 ZBTB7CA1YPR0 619 aa16.36■□□□□ 0.21
VPS53-207ENST00000570510 ABTB2Q8N961 1025 aa16.36■□□□□ 0.21
VPS53-207ENST00000570510 NUDT16Q96DE0 195 aaKnown RBP16.35■□□□□ 0.21
VPS53-207ENST00000570510 FHDC1Q9C0D6 1143 aaPredicted RBP16.35■□□□□ 0.21
VPS53-207ENST00000570510 STK32BQ9NY57 414 aa16.35■□□□□ 0.21
VPS53-207ENST00000570510 OVOS2A0A0G2JMS6 1433 aa16.35■□□□□ 0.21
VPS53-207ENST00000570510 OVOS2A0A0J9YW53 1432 aa16.35■□□□□ 0.21
VPS53-207ENST00000570510 OVOS2Q6IE36 1432 aa16.35■□□□□ 0.21
VPS53-207ENST00000570510 DDB1Q16531 1140 aa16.34■□□□□ 0.21
VPS53-207ENST00000570510 SYT17Q9BSW7 474 aa16.34■□□□□ 0.21
VPS53-207ENST00000570510 ANO8Q9HCE9 1232 aaPredicted RBP16.34■□□□□ 0.21
VPS53-207ENST00000570510 ATP7BP35670 1465 aa16.33■□□□□ 0.2
VPS53-207ENST00000570510 NRKQ7Z2Y5 1582 aa16.33■□□□□ 0.2
VPS53-207ENST00000570510 PDGFDQ9GZP0 370 aaPredicted RBP16.32■□□□□ 0.2
VPS53-207ENST00000570510 GIGYF1O75420 1035 aaPredicted RBP16.31■□□□□ 0.2
VPS53-207ENST00000570510 PTGER2P43116 358 aa16.31■□□□□ 0.2
VPS53-207ENST00000570510 GPR162Q16538 588 aa16.31■□□□□ 0.2
VPS53-207ENST00000570510 NLRP13Q86W25 1043 aa16.31■□□□□ 0.2
VPS53-207ENST00000570510 KDM2AQ9Y2K7 1162 aa16.31■□□□□ 0.2
VPS53-207ENST00000570510 CRYBG1Q9Y4K1 1723 aa16.31■□□□□ 0.2
VPS53-207ENST00000570510 UTRNP46939 3433 aa16.3■□□□□ 0.2
VPS53-207ENST00000570510 TOM1L2Q6ZVM7 507 aa16.3■□□□□ 0.2
VPS53-207ENST00000570510 MTFR1LQ9H019 292 aa16.3■□□□□ 0.2
VPS53-207ENST00000570510 ACEP12821 1306 aa16.29■□□□□ 0.2
VPS53-207ENST00000570510 CPDO75976 1380 aa16.28■□□□□ 0.2
VPS53-207ENST00000570510 PHRF1Q9P1Y6 1649 aaKnown RBP16.28■□□□□ 0.2
VPS53-207ENST00000570510 GCP02774 474 aa16.28■□□□□ 0.2
VPS53-207ENST00000570510 SLC15A2Q16348 729 aa16.28■□□□□ 0.2
VPS53-207ENST00000570510 CDK19Q9BWU1 502 aa16.28■□□□□ 0.2
VPS53-207ENST00000570510 CRB1P82279 1406 aa16.28■□□□□ 0.2
VPS53-207ENST00000570510 ARXQ96QS3 562 aa16.27■□□□□ 0.2
VPS53-207ENST00000570510 CCDC61Q9Y6R9 512 aa16.27■□□□□ 0.2
VPS53-207ENST00000570510 TXNRD1Q16881 649 aa16.26■□□□□ 0.19
VPS53-207ENST00000570510 PELP1Q8IZL8 1130 aaKnown RBP16.26■□□□□ 0.19
VPS53-207ENST00000570510 DCAF11Q8TEB1 546 aa16.26■□□□□ 0.19
VPS53-207ENST00000570510 MYOM1P52179 1685 aa16.25■□□□□ 0.19
VPS53-207ENST00000570510 KLHL34Q8N239 644 aa16.25■□□□□ 0.19
VPS53-207ENST00000570510 PROM2Q8N271 834 aa16.25■□□□□ 0.19
VPS53-207ENST00000570510 ITSN1Q15811 1721 aa16.25■□□□□ 0.19
VPS53-207ENST00000570510 COL5A2P05997 1499 aaPredicted RBP16.24■□□□□ 0.19
VPS53-207ENST00000570510 PTF1AQ7RTS3 328 aa16.24■□□□□ 0.19
VPS53-207ENST00000570510 CDCA7Q9BWT1 371 aaPredicted RBP16.24■□□□□ 0.19
VPS53-207ENST00000570510 PARP4Q9UKK3 1724 aaKnown RBP16.23■□□□□ 0.19
VPS53-207ENST00000570510 ADGRB1O14514 1584 aa16.23■□□□□ 0.19
VPS53-207ENST00000570510 POLR3AO14802 1390 aaPredicted RBP16.23■□□□□ 0.19
VPS53-207ENST00000570510 CASZ1Q86V15 1759 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms