RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 ONECUT3O60422 494 aaPredicted RBP12.53□□□□□ -0.4
CTDNEP1-203ENST00000570385 SF3B2Q13435 895 aaKnown RBP12.53□□□□□ -0.4
CTDNEP1-203ENST00000570385 NBPF1Q3BBV0 1214 aa12.53□□□□□ -0.4
CTDNEP1-203ENST00000570385 FAM182BQ5T319 152 aa12.53□□□□□ -0.4
CTDNEP1-203ENST00000570385 STAC3Q96MF2 364 aa12.53□□□□□ -0.4
CTDNEP1-203ENST00000570385 BLMP54132 1417 aaPredicted RBP12.53□□□□□ -0.4
CTDNEP1-203ENST00000570385 SRCAPQ6ZRS2 3230 aa12.52□□□□□ -0.4
CTDNEP1-203ENST00000570385 NWD2Q9ULI1 1742 aa12.52□□□□□ -0.41
CTDNEP1-203ENST00000570385 CHRNA2Q15822 529 aa12.52□□□□□ -0.41
CTDNEP1-203ENST00000570385 PRDM11Q9NQV5 511 aa12.52□□□□□ -0.41
CTDNEP1-203ENST00000570385 ALS2Q96Q42 1657 aa12.51□□□□□ -0.41
CTDNEP1-203ENST00000570385 ARHGEF28Q8N1W1 1705 aaKnown RBP12.51□□□□□ -0.41
CTDNEP1-203ENST00000570385 ZC3H6P61129 1189 aaKnown RBP12.5□□□□□ -0.41
CTDNEP1-203ENST00000570385 STRN4Q9NRL3 753 aa12.5□□□□□ -0.41
CTDNEP1-203ENST00000570385 ATP7BP35670 1465 aa12.5□□□□□ -0.41
CTDNEP1-203ENST00000570385 KIAA0232Q92628 1395 aa12.49□□□□□ -0.41
CTDNEP1-203ENST00000570385 ACEP12821 1306 aa12.49□□□□□ -0.41
CTDNEP1-203ENST00000570385 SPATA31A5Q5VU36 1347 aa12.49□□□□□ -0.41
CTDNEP1-203ENST00000570385 SPATA31A7Q8IWB4 1347 aa12.49□□□□□ -0.41
CTDNEP1-203ENST00000570385 NBPF8Q3BBV2 869 aa12.49□□□□□ -0.41
CTDNEP1-203ENST00000570385 NRAPQ86VF7 1730 aa12.48□□□□□ -0.41
CTDNEP1-203ENST00000570385 CCDC61Q9Y6R9 512 aa12.48□□□□□ -0.41
CTDNEP1-203ENST00000570385 COL14A1Q05707 1796 aaKnown RBP12.48□□□□□ -0.41
CTDNEP1-203ENST00000570385 SRPK2P78362 688 aaKnown RBP12.47□□□□□ -0.41
CTDNEP1-203ENST00000570385 USP35Q9P2H5 1018 aa12.47□□□□□ -0.41
CTDNEP1-203ENST00000570385 PSDA5PKW4 1024 aaPredicted RBP12.46□□□□□ -0.41
CTDNEP1-203ENST00000570385 EN1Q05925 392 aaPredicted RBP12.46□□□□□ -0.41
CTDNEP1-203ENST00000570385 ABTB2Q8N961 1025 aa12.46□□□□□ -0.41
CTDNEP1-203ENST00000570385 CABP2Q9NPB3 220 aa12.46□□□□□ -0.41
CTDNEP1-203ENST00000570385 ITSN1Q15811 1721 aa12.45□□□□□ -0.42
CTDNEP1-203ENST00000570385 CRYBG1Q9Y4K1 1723 aa12.45□□□□□ -0.42
CTDNEP1-203ENST00000570385 BAG6P46379 1132 aa12.45□□□□□ -0.42
CTDNEP1-203ENST00000570385 EVA1CP58658 441 aa12.45□□□□□ -0.42
CTDNEP1-203ENST00000570385 POLR3AO14802 1390 aaPredicted RBP12.44□□□□□ -0.42
CTDNEP1-203ENST00000570385 SPATA31A1Q5TZJ5 1347 aa12.44□□□□□ -0.42
CTDNEP1-203ENST00000570385 PLEKHG3A1L390 1219 aa12.44□□□□□ -0.42
CTDNEP1-203ENST00000570385 ZBTB7CA1YPR0 619 aa12.44□□□□□ -0.42
CTDNEP1-203ENST00000570385 SIN3AQ96ST3 1273 aa12.44□□□□□ -0.42
CTDNEP1-203ENST00000570385 CENPJQ9HC77 1338 aaPredicted RBP12.43□□□□□ -0.42
CTDNEP1-203ENST00000570385 L3MBTL2Q969R5 705 aa12.43□□□□□ -0.42
CTDNEP1-203ENST00000570385 NEUROD1Q13562 356 aa12.42□□□□□ -0.42
CTDNEP1-203ENST00000570385 LARP1Q6PKG0 1096 aaKnown RBP12.42□□□□□ -0.42
CTDNEP1-203ENST00000570385 CABP1Q9NZU7 370 aa12.42□□□□□ -0.42
CTDNEP1-203ENST00000570385 PPIP5K1Q6PFW1 1433 aa12.42□□□□□ -0.42
CTDNEP1-203ENST00000570385 KIAA1210Q9ULL0 1709 aa12.42□□□□□ -0.42
CTDNEP1-203ENST00000570385 TOPAZ1Q8N9V7 1692 aa12.42□□□□□ -0.42
CTDNEP1-203ENST00000570385 PHRF1Q9P1Y6 1649 aaKnown RBP12.41□□□□□ -0.42
CTDNEP1-203ENST00000570385 TRIM37O94972 964 aa12.41□□□□□ -0.42
CTDNEP1-203ENST00000570385 GCP02774 474 aa12.4□□□□□ -0.42
CTDNEP1-203ENST00000570385 EZH2Q15910 746 aaKnown RBP12.4□□□□□ -0.42
CTDNEP1-203ENST00000570385 NLRP13Q86W25 1043 aa12.4□□□□□ -0.42
CTDNEP1-203ENST00000570385 THSD7AQ9UPZ6 1657 aa12.4□□□□□ -0.42
CTDNEP1-203ENST00000570385 CAMTA1Q9Y6Y1 1673 aa12.39□□□□□ -0.43
CTDNEP1-203ENST00000570385 SSH2Q76I76 1423 aa12.39□□□□□ -0.43
CTDNEP1-203ENST00000570385 NLRP6P59044 892 aa12.39□□□□□ -0.43
CTDNEP1-203ENST00000570385 R3HDM1Q15032 1099 aaKnown RBP12.39□□□□□ -0.43
CTDNEP1-203ENST00000570385 USP19O94966 1318 aa12.38□□□□□ -0.43
CTDNEP1-203ENST00000570385 PDE3BQ13370 1112 aa12.38□□□□□ -0.43
CTDNEP1-203ENST00000570385 FAM196AQ6ZSG2 479 aa12.38□□□□□ -0.43
CTDNEP1-203ENST00000570385 NRKQ7Z2Y5 1582 aa12.38□□□□□ -0.43
CTDNEP1-203ENST00000570385 APBA3O96018 575 aa12.37□□□□□ -0.43
CTDNEP1-203ENST00000570385 TCP11L2Q8N4U5 519 aa12.37□□□□□ -0.43
CTDNEP1-203ENST00000570385 QRICH2Q9H0J4 1663 aa12.37□□□□□ -0.43
CTDNEP1-203ENST00000570385 RGPD1P0DJD0 1748 aa12.37□□□□□ -0.43
CTDNEP1-203ENST00000570385 CPDO75976 1380 aa12.36□□□□□ -0.43
CTDNEP1-203ENST00000570385 SOX12O15370 315 aa12.36□□□□□ -0.43
CTDNEP1-203ENST00000570385 BARGINQ6ZT62 677 aa12.36□□□□□ -0.43
CTDNEP1-203ENST00000570385 CAMKK2Q96RR4 588 aa12.35□□□□□ -0.43
CTDNEP1-203ENST00000570385 USP6P35125 1406 aa12.35□□□□□ -0.43
CTDNEP1-203ENST00000570385 EVC2Q86UK5 1308 aa12.35□□□□□ -0.43
CTDNEP1-203ENST00000570385 ROCK2O75116 1388 aaKnown RBP12.34□□□□□ -0.43
CTDNEP1-203ENST00000570385 TNS1Q9HBL0 1735 aaKnown RBP12.34□□□□□ -0.43
CTDNEP1-203ENST00000570385 LMO7Q8WWI1 1683 aa12.33□□□□□ -0.44
CTDNEP1-203ENST00000570385 COL5A2P05997 1499 aaPredicted RBP12.33□□□□□ -0.44
CTDNEP1-203ENST00000570385 DISP2A7MBM2 1401 aa12.32□□□□□ -0.44
CTDNEP1-203ENST00000570385 TOM1L2Q6ZVM7 507 aa12.32□□□□□ -0.44
CTDNEP1-203ENST00000570385 AXIN2Q9Y2T1 843 aa12.32□□□□□ -0.44
CTDNEP1-203ENST00000570385 TRPM1Q7Z4N2 1603 aa12.31□□□□□ -0.44
CTDNEP1-203ENST00000570385 THRAP3Q9Y2W1 955 aaKnown RBP12.31□□□□□ -0.44
CTDNEP1-203ENST00000570385 TTC21BQ7Z4L5 1316 aa12.31□□□□□ -0.44
CTDNEP1-203ENST00000570385 BRD4O60885 1362 aaPredicted RBP12.3□□□□□ -0.44
CTDNEP1-203ENST00000570385 AATKQ6ZMQ8 1374 aa12.3□□□□□ -0.44
CTDNEP1-203ENST00000570385 LRP5O75197 1615 aa12.3□□□□□ -0.44
CTDNEP1-203ENST00000570385 CRB1P82279 1406 aa12.3□□□□□ -0.44
CTDNEP1-203ENST00000570385 SLIT3O75094 1523 aa12.29□□□□□ -0.44
CTDNEP1-203ENST00000570385 CSB-PGBD3P0DP91 1061 aa12.29□□□□□ -0.44
CTDNEP1-203ENST00000570385 PTF1AQ7RTS3 328 aa12.29□□□□□ -0.44
CTDNEP1-203ENST00000570385 PIK3C2AO00443 1686 aa12.29□□□□□ -0.44
CTDNEP1-203ENST00000570385 DDB1Q16531 1140 aa12.28□□□□□ -0.44
CTDNEP1-203ENST00000570385 ARHGEF25Q86VW2 580 aa12.28□□□□□ -0.44
CTDNEP1-203ENST00000570385 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.28□□□□□ -0.44
CTDNEP1-203ENST00000570385 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
CTDNEP1-203ENST00000570385 KTN1Q86UP2 1357 aaKnown RBP12.28□□□□□ -0.44
CTDNEP1-203ENST00000570385 TMC1Q8TDI8 760 aa12.27□□□□□ -0.45
CTDNEP1-203ENST00000570385 CARD11Q9BXL7 1154 aa12.27□□□□□ -0.45
CTDNEP1-203ENST00000570385 WDR17Q8IZU2 1322 aa12.27□□□□□ -0.45
CTDNEP1-203ENST00000570385 COL18A1P39060 1754 aa12.26□□□□□ -0.45
CTDNEP1-203ENST00000570385 NBPF14Q5TI25 921 aa12.26□□□□□ -0.45
CTDNEP1-203ENST00000570385 KCNH5Q8NCM2 988 aa12.26□□□□□ -0.45
CTDNEP1-203ENST00000570385 PARD3Q8TEW0 1356 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms