RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 BRD4O60885 1362 aaPredicted RBP25.37■■□□□ 1.65
COMMD4-213ENST00000565834 KIF1AQ12756 1690 aa25.37■■□□□ 1.65
COMMD4-213ENST00000565834 GGNBP2Q9H3C7 697 aa25.36■■□□□ 1.65
COMMD4-213ENST00000565834 PPP2R1AP30153 589 aa25.36■■□□□ 1.65
COMMD4-213ENST00000565834 TTC21BQ7Z4L5 1316 aa25.34■■□□□ 1.65
COMMD4-213ENST00000565834 SSH2Q76I76 1423 aa25.34■■□□□ 1.65
COMMD4-213ENST00000565834 ORAI2Q96SN7 254 aa25.32■■□□□ 1.64
COMMD4-213ENST00000565834 LTBP4Q8N2S1 1624 aa25.32■■□□□ 1.64
COMMD4-213ENST00000565834 NME9Q86XW9 330 aa25.32■■□□□ 1.64
COMMD4-213ENST00000565834 TTC21AQ8NDW8 1320 aa25.31■■□□□ 1.64
COMMD4-213ENST00000565834 TNNT2P45379 298 aaPredicted RBP25.29■■□□□ 1.64
COMMD4-213ENST00000565834 PSME1Q06323 249 aa25.26■■□□□ 1.63
COMMD4-213ENST00000565834 COG3Q96JB2 828 aa25.26■■□□□ 1.63
COMMD4-213ENST00000565834 PIK3C2AO00443 1686 aa25.26■■□□□ 1.63
COMMD4-213ENST00000565834 YTHDC1Q96MU7 727 aaKnown RBP25.26■■□□□ 1.63
COMMD4-213ENST00000565834 FOXO3O43524 673 aa25.24■■□□□ 1.63
COMMD4-213ENST00000565834 ZRANB1Q9UGI0 708 aa25.24■■□□□ 1.63
COMMD4-213ENST00000565834 OVOS2A0A0J9YW53 1432 aa25.23■■□□□ 1.63
COMMD4-213ENST00000565834 OVOS2Q6IE36 1432 aa25.23■■□□□ 1.63
COMMD4-213ENST00000565834 SCAF1Q9H7N4 1312 aaKnown RBP25.23■■□□□ 1.63
COMMD4-213ENST00000565834 PAK3O75914 559 aaPredicted RBP25.22■■□□□ 1.63
COMMD4-213ENST00000565834 FAM9BQ8IZU0 186 aa25.22■■□□□ 1.63
COMMD4-213ENST00000565834 SLAIN2Q9P270 581 aa25.22■■□□□ 1.63
COMMD4-213ENST00000565834 TRPM3Q9HCF6 1732 aaPredicted RBP25.21■■□□□ 1.63
COMMD4-213ENST00000565834 USP54Q70EL1 1684 aa25.2■■□□□ 1.63
COMMD4-213ENST00000565834 PNISRQ8TF01 805 aaKnown RBP25.2■■□□□ 1.63
COMMD4-213ENST00000565834 MAP2P11137 1827 aaKnown RBP25.2■■□□□ 1.62
COMMD4-213ENST00000565834 USP31Q70CQ4 1352 aa25.2■■□□□ 1.62
COMMD4-213ENST00000565834 MTHFSP49914 203 aa25.18■■□□□ 1.62
COMMD4-213ENST00000565834 KRT28Q7Z3Y7 464 aa25.18■■□□□ 1.62
COMMD4-213ENST00000565834 XPCQ01831 940 aaPredicted RBP25.17■■□□□ 1.62
COMMD4-213ENST00000565834 BRINP3Q76B58 766 aa25.17■■□□□ 1.62
COMMD4-213ENST00000565834 ABTB2Q8N961 1025 aa25.17■■□□□ 1.62
COMMD4-213ENST00000565834 MARF1Q9Y4F3 1742 aaKnown RBP25.17■■□□□ 1.62
COMMD4-213ENST00000565834 NPHP3Q7Z494 1330 aa25.17■■□□□ 1.62
COMMD4-213ENST00000565834 AATKQ6ZMQ8 1374 aa25.16■■□□□ 1.62
COMMD4-213ENST00000565834 NLRP6P59044 892 aa25.15■■□□□ 1.62
COMMD4-213ENST00000565834 CFAP53Q96M91 514 aa25.15■■□□□ 1.62
COMMD4-213ENST00000565834 NUTM2GQ5VZR2 741 aa25.12■■□□□ 1.61
COMMD4-213ENST00000565834 ALS2Q96Q42 1657 aa25.12■■□□□ 1.61
COMMD4-213ENST00000565834 DDX17Q92841 729 aaKnown RBP25.11■■□□□ 1.61
COMMD4-213ENST00000565834 POLKQ9UBT6 870 aa25.11■■□□□ 1.61
COMMD4-213ENST00000565834 PXDNQ92626 1479 aa25.11■■□□□ 1.61
COMMD4-213ENST00000565834 FBLN1P23142 703 aa25.1■■□□□ 1.61
COMMD4-213ENST00000565834 SMG6Q86US8 1419 aaKnown RBP25.1■■□□□ 1.61
COMMD4-213ENST00000565834 SBNO1A3KN83 1393 aa25.1■■□□□ 1.61
COMMD4-213ENST00000565834 WDR43Q15061 677 aaKnown RBP eCLIP25.1■■□□□ 1.61
COMMD4-213ENST00000565834 SHPRHQ149N8 1683 aa25.09■■□□□ 1.61
COMMD4-213ENST00000565834 NHSL1Q5SYE7 1610 aa25.08■■□□□ 1.61
COMMD4-213ENST00000565834 LMOD2Q6P5Q4 547 aa25.07■■□□□ 1.6
COMMD4-213ENST00000565834 EMILIN1Q9Y6C2 1016 aa25.07■■□□□ 1.6
COMMD4-213ENST00000565834 COL3A1P02461 1466 aaPredicted RBP25.07■■□□□ 1.6
COMMD4-213ENST00000565834 CDK12Q9NYV4 1490 aaPredicted RBP25.07■■□□□ 1.6
COMMD4-213ENST00000565834 PPM1GO15355 546 aaPredicted RBP25.07■■□□□ 1.6
COMMD4-213ENST00000565834 RRS1Q15050 365 aaKnown RBP25.07■■□□□ 1.6
COMMD4-213ENST00000565834 SOX12O15370 315 aa25.06■■□□□ 1.6
COMMD4-213ENST00000565834 PNPLA6Q8IY17 1366 aa25.06■■□□□ 1.6
COMMD4-213ENST00000565834 TNS3Q68CZ2 1445 aa25.06■■□□□ 1.6
COMMD4-213ENST00000565834 ROBO1Q9Y6N7 1651 aa25.05■■□□□ 1.6
COMMD4-213ENST00000565834 INSRP06213 1382 aa25.04■■□□□ 1.6
COMMD4-213ENST00000565834 HNRNPUQ00839 825 aaKnown RBP eCLIP25.04■■□□□ 1.6
COMMD4-213ENST00000565834 ADAMTS8Q9UP79 889 aa25.03■■□□□ 1.6
COMMD4-213ENST00000565834 SLIT3O75094 1523 aa25.02■■□□□ 1.6
COMMD4-213ENST00000565834 SOS2Q07890 1332 aaPredicted RBP25.02■■□□□ 1.6
COMMD4-213ENST00000565834 PEAK1Q9H792 1746 aa25.01■■□□□ 1.59
COMMD4-213ENST00000565834 SPATA31A3Q5VYP0 1347 aa25.01■■□□□ 1.59
COMMD4-213ENST00000565834 NFAT5O94916 1531 aa25.01■■□□□ 1.59
COMMD4-213ENST00000565834 ARHGEF10O15013 1369 aa25.01■■□□□ 1.59
COMMD4-213ENST00000565834 USP19O94966 1318 aa25.01■■□□□ 1.59
COMMD4-213ENST00000565834 KCNH5Q8NCM2 988 aa25.01■■□□□ 1.59
COMMD4-213ENST00000565834 LTN1O94822 1766 aa25■■□□□ 1.59
COMMD4-213ENST00000565834 IQSEC2Q5JU85 1478 aa25■■□□□ 1.59
COMMD4-213ENST00000565834 MAP3K19Q56UN5 1328 aa25■■□□□ 1.59
COMMD4-213ENST00000565834 NUDCQ9Y266 331 aa25■■□□□ 1.59
COMMD4-213ENST00000565834 BLMP54132 1417 aaPredicted RBP25■■□□□ 1.59
COMMD4-213ENST00000565834 DIAPH1O60610 1272 aaKnown RBP24.99■■□□□ 1.59
COMMD4-213ENST00000565834 TOM1O60784 492 aa24.98■■□□□ 1.59
COMMD4-213ENST00000565834 AHDC1Q5TGY3 1603 aaPredicted RBP24.97■■□□□ 1.59
COMMD4-213ENST00000565834 MED1Q15648 1581 aaPredicted RBP24.96■■□□□ 1.59
COMMD4-213ENST00000565834 CENPBP07199 599 aaPredicted RBP24.96■■□□□ 1.59
COMMD4-213ENST00000565834 PHRF1Q9P1Y6 1649 aaKnown RBP24.96■■□□□ 1.59
COMMD4-213ENST00000565834 FLT4P35916 1363 aa24.96■■□□□ 1.59
COMMD4-213ENST00000565834 KIF24Q5T7B8 1368 aa24.96■■□□□ 1.59
COMMD4-213ENST00000565834 GCP02774 474 aa24.95■■□□□ 1.58
COMMD4-213ENST00000565834 AMPHP49418 695 aa24.95■■□□□ 1.58
COMMD4-213ENST00000565834 CRYBG1Q9Y4K1 1723 aa24.95■■□□□ 1.58
COMMD4-213ENST00000565834 PLEKHG5O94827 1062 aa24.94■■□□□ 1.58
COMMD4-213ENST00000565834 RTL1A6NKG5 1358 aa24.93■■□□□ 1.58
COMMD4-213ENST00000565834 U2SURPO15042 1029 aaKnown RBP24.93■■□□□ 1.58
COMMD4-213ENST00000565834 U2AF1L5P0DN76 240 aaPredicted RBP24.93■■□□□ 1.58
COMMD4-213ENST00000565834 U2AF1Q01081 240 aaKnown RBP eCLIP24.93■■□□□ 1.58
COMMD4-213ENST00000565834 IL13P35225 146 aa24.91■■□□□ 1.58
COMMD4-213ENST00000565834 UBAP1LF5GYI3 381 aa24.91■■□□□ 1.58
COMMD4-213ENST00000565834 HSP90AB2PQ58FF8 381 aa24.91■■□□□ 1.58
COMMD4-213ENST00000565834 CERKQ8TCT0 537 aa24.91■■□□□ 1.58
COMMD4-213ENST00000565834 HOXC9P31274 260 aa24.89■■□□□ 1.58
COMMD4-213ENST00000565834 PHLPP1O60346 1717 aa24.89■■□□□ 1.58
COMMD4-213ENST00000565834 ZBED9Q6R2W3 1325 aa24.89■■□□□ 1.57
COMMD4-213ENST00000565834 PIP4K2BP78356 416 aa24.88■■□□□ 1.57
COMMD4-213ENST00000565834 CCDC146Q8IYE0 955 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms