RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 KNDC1Q76NI1 1749 aa9.17□□□□□ -0.94
TCF4-228ENST00000565393 FMN2Q9NZ56 1722 aa9.17□□□□□ -0.94
TCF4-228ENST00000565393 KRT27Q7Z3Y8 459 aa9.17□□□□□ -0.94
TCF4-228ENST00000565393 STRN4Q9NRL3 753 aa9.17□□□□□ -0.94
TCF4-228ENST00000565393 COL22A1Q8NFW1 1626 aaPredicted RBP9.16□□□□□ -0.94
TCF4-228ENST00000565393 SLIT2O94813 1529 aa9.16□□□□□ -0.94
TCF4-228ENST00000565393 RALGAPBQ86X10 1494 aa9.16□□□□□ -0.94
TCF4-228ENST00000565393 ZBTB7CA1YPR0 619 aa9.16□□□□□ -0.94
TCF4-228ENST00000565393 NLRP13Q86W25 1043 aa9.16□□□□□ -0.94
TCF4-228ENST00000565393 KIF1AQ12756 1690 aa9.16□□□□□ -0.94
TCF4-228ENST00000565393 EVC2Q86UK5 1308 aa9.15□□□□□ -0.94
TCF4-228ENST00000565393 USP35Q9P2H5 1018 aa9.15□□□□□ -0.94
TCF4-228ENST00000565393 TULP4Q9NRJ4 1543 aa9.15□□□□□ -0.95
TCF4-228ENST00000565393 GCP02774 474 aa9.14□□□□□ -0.95
TCF4-228ENST00000565393 NLRP6P59044 892 aa9.14□□□□□ -0.95
TCF4-228ENST00000565393 FAM182BQ5T319 152 aa9.14□□□□□ -0.95
TCF4-228ENST00000565393 ROCK2O75116 1388 aaKnown RBP9.13□□□□□ -0.95
TCF4-228ENST00000565393 DEFB132Q7Z7B7 95 aa9.13□□□□□ -0.95
TCF4-228ENST00000565393 ZNF692Q9BU19 519 aaPredicted RBP9.13□□□□□ -0.95
TCF4-228ENST00000565393 POLR3AO14802 1390 aaPredicted RBP9.12□□□□□ -0.95
TCF4-228ENST00000565393 KIAA0232Q92628 1395 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 SPATA31A5Q5VU36 1347 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 SPATA31A7Q8IWB4 1347 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 TRIM26Q12899 539 aaPredicted RBP9.12□□□□□ -0.95
TCF4-228ENST00000565393 PDE3BQ13370 1112 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 CARD11Q9BXL7 1154 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 PPIP5K1Q6PFW1 1433 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 ADGRB2O60241 1585 aa9.12□□□□□ -0.95
TCF4-228ENST00000565393 LARP1Q6PKG0 1096 aaKnown RBP9.11□□□□□ -0.95
TCF4-228ENST00000565393 USP32Q8NFA0 1604 aa9.11□□□□□ -0.95
TCF4-228ENST00000565393 RGPD8O14715 1765 aaPredicted RBP9.11□□□□□ -0.95
TCF4-228ENST00000565393 SPATA31A1Q5TZJ5 1347 aa9.1□□□□□ -0.95
TCF4-228ENST00000565393 ATP7BP35670 1465 aa9.1□□□□□ -0.95
TCF4-228ENST00000565393 SOX12O15370 315 aa9.1□□□□□ -0.95
TCF4-228ENST00000565393 BAG6P46379 1132 aa9.1□□□□□ -0.95
TCF4-228ENST00000565393 TMC1Q8TDI8 760 aa9.1□□□□□ -0.95
TCF4-228ENST00000565393 BLMP54132 1417 aaPredicted RBP9.1□□□□□ -0.95
TCF4-228ENST00000565393 TCP11L2Q8N4U5 519 aa9.09□□□□□ -0.95
TCF4-228ENST00000565393 TONSLQ96HA7 1378 aa9.09□□□□□ -0.95
TCF4-228ENST00000565393 GLI3P10071 1580 aa9.08□□□□□ -0.96
TCF4-228ENST00000565393 EN1Q05925 392 aaPredicted RBP9.08□□□□□ -0.96
TCF4-228ENST00000565393 FAM196AQ6ZSG2 479 aa9.08□□□□□ -0.96
TCF4-228ENST00000565393 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.08□□□□□ -0.96
TCF4-228ENST00000565393 TRIM37O94972 964 aa9.07□□□□□ -0.96
TCF4-228ENST00000565393 APBA3O96018 575 aa9.07□□□□□ -0.96
TCF4-228ENST00000565393 CSB-PGBD3P0DP91 1061 aa9.07□□□□□ -0.96
TCF4-228ENST00000565393 BARGINQ6ZT62 677 aa9.07□□□□□ -0.96
TCF4-228ENST00000565393 TOM1L2Q6ZVM7 507 aa9.07□□□□□ -0.96
TCF4-228ENST00000565393 KCNH5Q8NCM2 988 aa9.07□□□□□ -0.96
TCF4-228ENST00000565393 BRD4O60885 1362 aaPredicted RBP9.07□□□□□ -0.96
TCF4-228ENST00000565393 TTC21BQ7Z4L5 1316 aa9.06□□□□□ -0.96
TCF4-228ENST00000565393 HDGFL2Q7Z4V5 671 aaPredicted RBP9.06□□□□□ -0.96
TCF4-228ENST00000565393 THRAP3Q9Y2W1 955 aaKnown RBP9.06□□□□□ -0.96
TCF4-228ENST00000565393 USP19O94966 1318 aa9.05□□□□□ -0.96
TCF4-228ENST00000565393 CPDO75976 1380 aa9.05□□□□□ -0.96
TCF4-228ENST00000565393 KTN1Q86UP2 1357 aaKnown RBP9.05□□□□□ -0.96
TCF4-228ENST00000565393 PSDA5PKW4 1024 aaPredicted RBP9.05□□□□□ -0.96
TCF4-228ENST00000565393 EZH2Q15910 746 aaKnown RBP9.05□□□□□ -0.96
TCF4-228ENST00000565393 SLC12A5Q9H2X9 1139 aa9.05□□□□□ -0.96
TCF4-228ENST00000565393 ARHGEF28Q8N1W1 1705 aaKnown RBP9.05□□□□□ -0.96
TCF4-228ENST00000565393 MARF1Q9Y4F3 1742 aaKnown RBP9.05□□□□□ -0.96
TCF4-228ENST00000565393 USP6P35125 1406 aa9.05□□□□□ -0.96
TCF4-228ENST00000565393 TERF2IPQ9NYB0 399 aa9.04□□□□□ -0.96
TCF4-228ENST00000565393 AXIN2Q9Y2T1 843 aa9.04□□□□□ -0.96
TCF4-228ENST00000565393 TRPM3Q9HCF6 1732 aaPredicted RBP9.04□□□□□ -0.96
TCF4-228ENST00000565393 SSH2Q76I76 1423 aa9.04□□□□□ -0.96
TCF4-228ENST00000565393 COL14A1Q05707 1796 aaKnown RBP9.04□□□□□ -0.96
TCF4-228ENST00000565393 TTC21AQ8NDW8 1320 aa9.04□□□□□ -0.96
TCF4-228ENST00000565393 KIAA1210Q9ULL0 1709 aa9.03□□□□□ -0.96
TCF4-228ENST00000565393 ST20-MTHFSA0A0A6YYL1 179 aa9.03□□□□□ -0.96
TCF4-228ENST00000565393 SLC24A1O60721 1099 aa9.03□□□□□ -0.96
TCF4-228ENST00000565393 ARHGEF25Q86VW2 580 aa9.03□□□□□ -0.96
TCF4-228ENST00000565393 PCGF6Q9BYE7 350 aa9.03□□□□□ -0.96
TCF4-228ENST00000565393 ALS2Q96Q42 1657 aa9.03□□□□□ -0.96
TCF4-228ENST00000565393 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.02□□□□□ -0.96
TCF4-228ENST00000565393 AATKQ6ZMQ8 1374 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 PLCH1Q4KWH8 1693 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 CAMTA1Q9Y6Y1 1673 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 EXOC5O00471 708 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 R3HDM1Q15032 1099 aaKnown RBP9.02□□□□□ -0.97
TCF4-228ENST00000565393 DDB1Q16531 1140 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 NBPF14Q5TI25 921 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 NME9Q86XW9 330 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 CAMKK2Q96RR4 588 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 NWD2Q9ULI1 1742 aa9.02□□□□□ -0.97
TCF4-228ENST00000565393 C11orf95C9JLR9 678 aaPredicted RBP9.01□□□□□ -0.97
TCF4-228ENST00000565393 CRB1P82279 1406 aa9□□□□□ -0.97
TCF4-228ENST00000565393 PUS7Q96PZ0 661 aaKnown RBP9□□□□□ -0.97
TCF4-228ENST00000565393 CARD10Q9BWT7 1032 aa9□□□□□ -0.97
TCF4-228ENST00000565393 NLRP2Q9NX02 1062 aa9□□□□□ -0.97
TCF4-228ENST00000565393 WDR17Q8IZU2 1322 aa9□□□□□ -0.97
TCF4-228ENST00000565393 ITSN1Q15811 1721 aa9□□□□□ -0.97
TCF4-228ENST00000565393 CPSF1Q10570 1443 aaKnown RBP8.99□□□□□ -0.97
TCF4-228ENST00000565393 CDCA7Q9BWT1 371 aaPredicted RBP8.99□□□□□ -0.97
TCF4-228ENST00000565393 ABCA3Q99758 1704 aa8.99□□□□□ -0.97
TCF4-228ENST00000565393 COL5A2P05997 1499 aaPredicted RBP8.98□□□□□ -0.97
TCF4-228ENST00000565393 TMF1P82094 1093 aa8.98□□□□□ -0.97
TCF4-228ENST00000565393 MARCH10Q8NA82 808 aaPredicted RBP8.98□□□□□ -0.97
TCF4-228ENST00000565393 LTV1Q96GA3 475 aaPredicted RBP8.98□□□□□ -0.97
TCF4-228ENST00000565393 TESK2Q96S53 571 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms