RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 ESCO1Q5FWF5 840 aa13.8□□□□□ -0.2
SMG1-208ENST00000563448 NGDNQ8NEJ9 315 aaKnown RBP13.8□□□□□ -0.2
SMG1-208ENST00000563448 ORAI2Q96SN7 254 aa13.8□□□□□ -0.2
SMG1-208ENST00000563448 TRPM3Q9HCF6 1732 aaPredicted RBP13.79□□□□□ -0.2
SMG1-208ENST00000563448 CADPS2Q86UW7 1296 aa13.79□□□□□ -0.2
SMG1-208ENST00000563448 GGNBP2Q9H3C7 697 aa13.79□□□□□ -0.2
SMG1-208ENST00000563448 USP54Q70EL1 1684 aa13.79□□□□□ -0.2
SMG1-208ENST00000563448 TTC21BQ7Z4L5 1316 aa13.78□□□□□ -0.2
SMG1-208ENST00000563448 PPP2R1AP30153 589 aa13.78□□□□□ -0.2
SMG1-208ENST00000563448 MORC1Q86VD1 984 aa13.78□□□□□ -0.2
SMG1-208ENST00000563448 MRS2Q9HD23 443 aa13.78□□□□□ -0.2
SMG1-208ENST00000563448 BRD4O60885 1362 aaPredicted RBP13.77□□□□□ -0.2
SMG1-208ENST00000563448 NLRP13Q86W25 1043 aa13.77□□□□□ -0.21
SMG1-208ENST00000563448 NME9Q86XW9 330 aa13.77□□□□□ -0.21
SMG1-208ENST00000563448 ZRANB1Q9UGI0 708 aa13.76□□□□□ -0.21
SMG1-208ENST00000563448 TTC21AQ8NDW8 1320 aa13.75□□□□□ -0.21
SMG1-208ENST00000563448 TNNT2P45379 298 aaPredicted RBP13.74□□□□□ -0.21
SMG1-208ENST00000563448 ALS2Q96Q42 1657 aa13.74□□□□□ -0.21
SMG1-208ENST00000563448 OVOS2A0A0J9YW53 1432 aa13.73□□□□□ -0.21
SMG1-208ENST00000563448 OVOS2Q6IE36 1432 aa13.73□□□□□ -0.21
SMG1-208ENST00000563448 SHPRHQ149N8 1683 aa13.73□□□□□ -0.21
SMG1-208ENST00000563448 FOXO3O43524 673 aa13.73□□□□□ -0.21
SMG1-208ENST00000563448 PSME1Q06323 249 aa13.72□□□□□ -0.21
SMG1-208ENST00000563448 NHSL1Q5SYE7 1610 aa13.72□□□□□ -0.21
SMG1-208ENST00000563448 USP31Q70CQ4 1352 aa13.71□□□□□ -0.21
SMG1-208ENST00000563448 COG3Q96JB2 828 aa13.71□□□□□ -0.21
SMG1-208ENST00000563448 SLAIN2Q9P270 581 aa13.71□□□□□ -0.21
SMG1-208ENST00000563448 SCAF1Q9H7N4 1312 aaKnown RBP13.7□□□□□ -0.22
SMG1-208ENST00000563448 PNISRQ8TF01 805 aaKnown RBP13.7□□□□□ -0.22
SMG1-208ENST00000563448 YTHDC1Q96MU7 727 aaKnown RBP13.7□□□□□ -0.22
SMG1-208ENST00000563448 LTN1O94822 1766 aa13.7□□□□□ -0.22
SMG1-208ENST00000563448 PAK3O75914 559 aaPredicted RBP13.69□□□□□ -0.22
SMG1-208ENST00000563448 XPCQ01831 940 aaPredicted RBP13.69□□□□□ -0.22
SMG1-208ENST00000563448 BRINP3Q76B58 766 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 KRT28Q7Z3Y7 464 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 FAM9BQ8IZU0 186 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 ROBO1Q9Y6N7 1651 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 FBLN1P23142 703 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 MTHFSP49914 203 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 DDX17Q92841 729 aaKnown RBP13.69□□□□□ -0.22
SMG1-208ENST00000563448 PXDNQ92626 1479 aa13.69□□□□□ -0.22
SMG1-208ENST00000563448 ABTB2Q8N961 1025 aa13.68□□□□□ -0.22
SMG1-208ENST00000563448 AATKQ6ZMQ8 1374 aa13.68□□□□□ -0.22
SMG1-208ENST00000563448 PEAK1Q9H792 1746 aa13.68□□□□□ -0.22
SMG1-208ENST00000563448 CRYBG1Q9Y4K1 1723 aa13.68□□□□□ -0.22
SMG1-208ENST00000563448 SMG6Q86US8 1419 aaKnown RBP13.67□□□□□ -0.22
SMG1-208ENST00000563448 NLRP6P59044 892 aa13.66□□□□□ -0.22
SMG1-208ENST00000563448 NUTM2GQ5VZR2 741 aa13.66□□□□□ -0.22
SMG1-208ENST00000563448 NPHP3Q7Z494 1330 aa13.66□□□□□ -0.22
SMG1-208ENST00000563448 COL3A1P02461 1466 aaPredicted RBP13.66□□□□□ -0.22
SMG1-208ENST00000563448 POLKQ9UBT6 870 aa13.66□□□□□ -0.22
SMG1-208ENST00000563448 PHRF1Q9P1Y6 1649 aaKnown RBP13.65□□□□□ -0.22
SMG1-208ENST00000563448 SLIT3O75094 1523 aa13.64□□□□□ -0.23
SMG1-208ENST00000563448 SBNO1A3KN83 1393 aa13.64□□□□□ -0.23
SMG1-208ENST00000563448 RRS1Q15050 365 aaKnown RBP13.64□□□□□ -0.23
SMG1-208ENST00000563448 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
SMG1-208ENST00000563448 MED1Q15648 1581 aaPredicted RBP13.63□□□□□ -0.23
SMG1-208ENST00000563448 NFAT5O94916 1531 aa13.63□□□□□ -0.23
SMG1-208ENST00000563448 CDK12Q9NYV4 1490 aaPredicted RBP13.63□□□□□ -0.23
SMG1-208ENST00000563448 PNPLA6Q8IY17 1366 aa13.63□□□□□ -0.23
SMG1-208ENST00000563448 TNS3Q68CZ2 1445 aa13.63□□□□□ -0.23
SMG1-208ENST00000563448 RGPD5Q99666 1765 aa13.63□□□□□ -0.23
SMG1-208ENST00000563448 ILDR1Q86SU0 546 aaPredicted RBP13.63□□□□□ -0.23
SMG1-208ENST00000563448 CFAP53Q96M91 514 aa13.63□□□□□ -0.23
SMG1-208ENST00000563448 ABCA3Q99758 1704 aa13.62□□□□□ -0.23
SMG1-208ENST00000563448 INSRP06213 1382 aa13.62□□□□□ -0.23
SMG1-208ENST00000563448 SOS2Q07890 1332 aaPredicted RBP13.62□□□□□ -0.23
SMG1-208ENST00000563448 IQSEC2Q5JU85 1478 aa13.62□□□□□ -0.23
SMG1-208ENST00000563448 AHDC1Q5TGY3 1603 aaPredicted RBP13.62□□□□□ -0.23
SMG1-208ENST00000563448 SOX12O15370 315 aa13.61□□□□□ -0.23
SMG1-208ENST00000563448 SPATA31A3Q5VYP0 1347 aa13.61□□□□□ -0.23
SMG1-208ENST00000563448 PHLPP1O60346 1717 aa13.61□□□□□ -0.23
SMG1-208ENST00000563448 PPM1GO15355 546 aaPredicted RBP13.61□□□□□ -0.23
SMG1-208ENST00000563448 LMOD2Q6P5Q4 547 aa13.61□□□□□ -0.23
SMG1-208ENST00000563448 ADAMTS8Q9UP79 889 aa13.61□□□□□ -0.23
SMG1-208ENST00000563448 USP19O94966 1318 aa13.6□□□□□ -0.23
SMG1-208ENST00000563448 WDR43Q15061 677 aaKnown RBP eCLIP13.6□□□□□ -0.23
SMG1-208ENST00000563448 BLMP54132 1417 aaPredicted RBP13.6□□□□□ -0.23
SMG1-208ENST00000563448 MAP3K19Q56UN5 1328 aa13.59□□□□□ -0.23
SMG1-208ENST00000563448 RGPD1P0DJD0 1748 aa13.58□□□□□ -0.23
SMG1-208ENST00000563448 RGPD2P0DJD1 1756 aa13.58□□□□□ -0.24
SMG1-208ENST00000563448 DIAPH1O60610 1272 aaKnown RBP13.57□□□□□ -0.24
SMG1-208ENST00000563448 HNRNPUQ00839 825 aaKnown RBP eCLIP13.57□□□□□ -0.24
SMG1-208ENST00000563448 KCNH5Q8NCM2 988 aa13.57□□□□□ -0.24
SMG1-208ENST00000563448 ARHGEF10O15013 1369 aa13.57□□□□□ -0.24
SMG1-208ENST00000563448 COL18A1P39060 1754 aa13.57□□□□□ -0.24
SMG1-208ENST00000563448 TOM1O60784 492 aa13.57□□□□□ -0.24
SMG1-208ENST00000563448 COL16A1Q07092 1604 aaPredicted RBP13.57□□□□□ -0.24
SMG1-208ENST00000563448 PLEKHG5O94827 1062 aa13.56□□□□□ -0.24
SMG1-208ENST00000563448 GCP02774 474 aa13.56□□□□□ -0.24
SMG1-208ENST00000563448 CERKQ8TCT0 537 aa13.56□□□□□ -0.24
SMG1-208ENST00000563448 FLT4P35916 1363 aa13.56□□□□□ -0.24
SMG1-208ENST00000563448 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
SMG1-208ENST00000563448 COL22A1Q8NFW1 1626 aaPredicted RBP13.55□□□□□ -0.24
SMG1-208ENST00000563448 IL13P35225 146 aa13.55□□□□□ -0.24
SMG1-208ENST00000563448 AMPHP49418 695 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 HSP90AB2PQ58FF8 381 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 NUDCQ9Y266 331 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 RTL1A6NKG5 1358 aa13.54□□□□□ -0.24
SMG1-208ENST00000563448 SENP3-EIF4A1A0A087X0R7 540 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms