RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ARMC2Q8NEN0 867 aa7.19□□□□□ -1.26
VPS35-203ENST00000562420 GPKOWQ92917 476 aaPredicted RBP eCLIP7.19□□□□□ -1.26
VPS35-203ENST00000562420 WNT7BP56706 349 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 PRR20EP86478 221 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 PRR20CP86479 221 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 PRR20DP86480 221 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 PRR20BP86481 221 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 PRR20AP86496 221 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 TRIM32Q13049 653 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 UNC93B1Q9H1C4 597 aa7.18□□□□□ -1.26
VPS35-203ENST00000562420 GDF9O60383 454 aa7.17□□□□□ -1.26
VPS35-203ENST00000562420 CD2BP2O95400 341 aaKnown RBP7.17□□□□□ -1.26
VPS35-203ENST00000562420 FLIIQ13045 1269 aa7.17□□□□□ -1.26
VPS35-203ENST00000562420 CCDC24Q8N4L8 307 aa7.17□□□□□ -1.26
VPS35-203ENST00000562420 PNMA1Q8ND90 353 aa7.17□□□□□ -1.26
VPS35-203ENST00000562420 ST8SIA5O15466 376 aa7.16□□□□□ -1.26
VPS35-203ENST00000562420 NBPF14Q5TI25 921 aa7.16□□□□□ -1.26
VPS35-203ENST00000562420 PTCRAQ6ISU1 281 aaPredicted RBP7.16□□□□□ -1.26
VPS35-203ENST00000562420 LRRN4Q8WUT4 740 aa7.16□□□□□ -1.26
VPS35-203ENST00000562420 MAP10Q9P2G4 905 aa7.16□□□□□ -1.26
VPS35-203ENST00000562420 CTHP32929 405 aa7.15□□□□□ -1.26
VPS35-203ENST00000562420 FOXC1Q12948 553 aa7.15□□□□□ -1.26
VPS35-203ENST00000562420 MCM6Q14566 821 aa7.15□□□□□ -1.26
VPS35-203ENST00000562420 MTMR14Q8NCE2 650 aa7.15□□□□□ -1.26
VPS35-203ENST00000562420 GJD4Q96KN9 370 aaPredicted RBP7.15□□□□□ -1.26
VPS35-203ENST00000562420 TRIM34Q9BYJ4 488 aa7.14□□□□□ -1.27
VPS35-203ENST00000562420 HMX1Q9NP08 348 aaPredicted RBP7.14□□□□□ -1.27
VPS35-203ENST00000562420 FKBPLQ9UIM3 349 aa7.14□□□□□ -1.27
VPS35-203ENST00000562420 GPSM3Q9Y4H4 160 aa7.14□□□□□ -1.27
VPS35-203ENST00000562420 ZNF511Q8NB15 262 aa7.13□□□□□ -1.27
VPS35-203ENST00000562420 WNT7AO00755 349 aa7.12□□□□□ -1.27
VPS35-203ENST00000562420 NR6A1Q15406 480 aa7.12□□□□□ -1.27
VPS35-203ENST00000562420 PDXDC2PQ6P474 469 aa7.12□□□□□ -1.27
VPS35-203ENST00000562420 PRM3Q9NNZ6 103 aa7.12□□□□□ -1.27
VPS35-203ENST00000562420 AAASQ9NRG9 546 aa7.12□□□□□ -1.27
VPS35-203ENST00000562420 NDUFB9Q9Y6M9 179 aa7.12□□□□□ -1.27
VPS35-203ENST00000562420 SNRKQ9NRH2 765 aa7.11□□□□□ -1.27
VPS35-203ENST00000562420 PKD2L1Q9P0L9 805 aa7.11□□□□□ -1.27
VPS35-203ENST00000562420 SH3BP2P78314 561 aa7.1□□□□□ -1.27
VPS35-203ENST00000562420 SKOR1P84550 965 aa7.1□□□□□ -1.27
VPS35-203ENST00000562420 SH3BP5LQ7L8J4 393 aa7.1□□□□□ -1.27
VPS35-203ENST00000562420 SH3RF1Q7Z6J0 888 aa7.1□□□□□ -1.27
VPS35-203ENST00000562420 MPNDQ8N594 471 aa7.1□□□□□ -1.27
VPS35-203ENST00000562420 DACH1Q9UI36 760 aa7.1□□□□□ -1.27
VPS35-203ENST00000562420 GPR37L1O60883 481 aa7.09□□□□□ -1.27
VPS35-203ENST00000562420 BPHLQ86WA6 291 aaPredicted RBP7.09□□□□□ -1.27
VPS35-203ENST00000562420 BAP1Q92560 729 aa7.09□□□□□ -1.27
VPS35-203ENST00000562420 VARSP26640 1264 aaKnown RBP7.08□□□□□ -1.28
VPS35-203ENST00000562420 EPS8L1Q8TE68 723 aa7.08□□□□□ -1.28
VPS35-203ENST00000562420 C1QTNF2Q9BXJ5 285 aa7.08□□□□□ -1.28
VPS35-203ENST00000562420 RC3H1Q5TC82 1133 aaKnown RBP7.07□□□□□ -1.28
VPS35-203ENST00000562420 TREML4Q6UXN2 200 aa7.07□□□□□ -1.28
VPS35-203ENST00000562420 TRMT44Q8IYL2 757 aaKnown RBP7.07□□□□□ -1.28
VPS35-203ENST00000562420 PTK2Q05397 1052 aa7.06□□□□□ -1.28
VPS35-203ENST00000562420 LINC01559Q495D7 138 aa7.06□□□□□ -1.28
VPS35-203ENST00000562420 ZNF592Q92610 1267 aa7.06□□□□□ -1.28
VPS35-203ENST00000562420 SIAH2O43255 324 aa7.05□□□□□ -1.28
VPS35-203ENST00000562420 LCE2AQ5TA79 106 aaPredicted RBP7.05□□□□□ -1.28
VPS35-203ENST00000562420 EHBP1Q8NDI1 1231 aa7.05□□□□□ -1.28
VPS35-203ENST00000562420 FAM174AQ8TBP5 190 aa7.05□□□□□ -1.28
VPS35-203ENST00000562420 MAP4K5Q9Y4K4 846 aa7.05□□□□□ -1.28
VPS35-203ENST00000562420 ZBBXA8MT70 800 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 CYP4X1Q8N118 509 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 FOXJ1Q92949 421 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 MRGPRX2Q96LB1 330 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 ARHGAP9Q9BRR9 750 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 TOR4AQ9NXH8 423 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 GMPR2Q9P2T1 348 aaKnown RBP7.04□□□□□ -1.28
VPS35-203ENST00000562420 CDV3Q9UKY7 258 aaKnown RBP7.04□□□□□ -1.28
VPS35-203ENST00000562420 TBC1D2BQ9UPU7 963 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 COG6Q9Y2V7 657 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 GTF3C3Q9Y5Q9 886 aa7.04□□□□□ -1.28
VPS35-203ENST00000562420 UBTFP17480 764 aaKnown RBP7.03□□□□□ -1.28
VPS35-203ENST00000562420 MCCD1P59942 119 aaPredicted RBP7.03□□□□□ -1.28
VPS35-203ENST00000562420 NR1H3Q13133 447 aa7.03□□□□□ -1.28
VPS35-203ENST00000562420 C4orf48Q5BLP8 95 aa7.03□□□□□ -1.28
VPS35-203ENST00000562420 SNIP1Q8TAD8 396 aaKnown RBP7.03□□□□□ -1.28
VPS35-203ENST00000562420 CDK15Q96Q40 435 aa7.03□□□□□ -1.28
VPS35-203ENST00000562420 OCSTAMPQ9BR26 566 aa7.03□□□□□ -1.28
VPS35-203ENST00000562420 C11orf95C9JLR9 678 aaPredicted RBP7.02□□□□□ -1.29
VPS35-203ENST00000562420 AXIN1O15169 862 aa7.02□□□□□ -1.29
VPS35-203ENST00000562420 RAD21O60216 631 aa7.02□□□□□ -1.29
VPS35-203ENST00000562420 WASHC4Q2M389 1173 aa7.02□□□□□ -1.29
VPS35-203ENST00000562420 ERFEQ4G0M1 354 aa7.02□□□□□ -1.29
VPS35-203ENST00000562420 ZNF330Q9Y3S2 320 aaPredicted RBP7.02□□□□□ -1.29
VPS35-203ENST00000562420 A6NJR5 290 aa7.01□□□□□ -1.29
VPS35-203ENST00000562420 IRF5Q13568 498 aa7.01□□□□□ -1.29
VPS35-203ENST00000562420 AGERQ15109 404 aa7.01□□□□□ -1.29
VPS35-203ENST00000562420 ZBTB33Q86T24 672 aa7.01□□□□□ -1.29
VPS35-203ENST00000562420 WWC1Q8IX03 1113 aa7.01□□□□□ -1.29
VPS35-203ENST00000562420 CRIPAKQ8N1N5 446 aa7.01□□□□□ -1.29
VPS35-203ENST00000562420 AVPP01185 164 aa7□□□□□ -1.29
VPS35-203ENST00000562420 FBXO45P0C2W1 286 aa7□□□□□ -1.29
VPS35-203ENST00000562420 ADAM32Q8TC27 787 aa7□□□□□ -1.29
VPS35-203ENST00000562420 GDPD2Q9HCC8 539 aa7□□□□□ -1.29
VPS35-203ENST00000562420 MAGEB6P1A0A0J9YX57 407 aa6.99□□□□□ -1.29
VPS35-203ENST00000562420 TTC24A2A3L6 582 aaPredicted RBP6.99□□□□□ -1.29
VPS35-203ENST00000562420 WFS1O76024 890 aa6.99□□□□□ -1.29
VPS35-203ENST00000562420 SOX11P35716 441 aa6.99□□□□□ -1.29
VPS35-203ENST00000562420 ERICH6Q7L0X2 663 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms