RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	BAG6	P46379	1132 aa		10.47	□□□□□ -0.73
TPM1-231	ENST00000561395	SEPT12	Q8IYM1	358 aa		10.47	□□□□□ -0.73
TPM1-231	ENST00000561395	ADGRB1	O14514	1584 aa		10.47	□□□□□ -0.73
TPM1-231	ENST00000561395	ST20-MTHFS	A0A0A6YYL1	179 aa		10.46	□□□□□ -0.73
TPM1-231	ENST00000561395	ADGRB2	O60241	1585 aa		10.46	□□□□□ -0.74
TPM1-231	ENST00000561395	NUP188	Q5SRE5	1749 aa		10.46	□□□□□ -0.74
TPM1-231	ENST00000561395	CAMTA1	Q9Y6Y1	1673 aa		10.45	□□□□□ -0.74
TPM1-231	ENST00000561395	XPC	Q01831	940 aa	Predicted RBP	10.45	□□□□□ -0.74
TPM1-231	ENST00000561395	KNDC1	Q76NI1	1749 aa		10.44	□□□□□ -0.74
TPM1-231	ENST00000561395	EIF3A	Q14152	1382 aa	Known RBP	10.44	□□□□□ -0.74
TPM1-231	ENST00000561395	R3HDM1	Q15032	1099 aa	Known RBP	10.44	□□□□□ -0.74
TPM1-231	ENST00000561395	ESCO1	Q5FWF5	840 aa		10.44	□□□□□ -0.74
TPM1-231	ENST00000561395	CFAP70	Q5T0N1	1121 aa		10.44	□□□□□ -0.74
TPM1-231	ENST00000561395	KRT27	Q7Z3Y8	459 aa		10.44	□□□□□ -0.74
TPM1-231	ENST00000561395	CHD4	Q14839	1912 aa		10.43	□□□□□ -0.74
TPM1-231	ENST00000561395	VGF	O15240	615 aa	Predicted RBP	10.43	□□□□□ -0.74
TPM1-231	ENST00000561395	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.43	□□□□□ -0.74
TPM1-231	ENST00000561395	THSD7A	Q9UPZ6	1657 aa		10.43	□□□□□ -0.74
TPM1-231	ENST00000561395	LRPPRC	P42704	1394 aa	Known RBP	10.42	□□□□□ -0.74
TPM1-231	ENST00000561395	FOXO3	O43524	673 aa		10.42	□□□□□ -0.74
TPM1-231	ENST00000561395	EN1	Q05925	392 aa	Predicted RBP	10.42	□□□□□ -0.74
TPM1-231	ENST00000561395	VPS72	Q15906	364 aa		10.42	□□□□□ -0.74
TPM1-231	ENST00000561395	TESK2	Q96S53	571 aa		10.42	□□□□□ -0.74
TPM1-231	ENST00000561395	C14orf93	Q9H972	538 aa	Known RBP	10.42	□□□□□ -0.74
TPM1-231	ENST00000561395	DISP2	A7MBM2	1401 aa		10.41	□□□□□ -0.74
TPM1-231	ENST00000561395	QRICH2	Q9H0J4	1663 aa		10.41	□□□□□ -0.74
TPM1-231	ENST00000561395	ONECUT3	O60422	494 aa	Predicted RBP	10.41	□□□□□ -0.74
TPM1-231	ENST00000561395	CCDC9	Q9Y3X0	531 aa	Known RBP	10.41	□□□□□ -0.74
TPM1-231	ENST00000561395	COL14A1	Q05707	1796 aa	Known RBP	10.41	□□□□□ -0.74
TPM1-231	ENST00000561395	SPATA31A3	Q5VYP0	1347 aa		10.4	□□□□□ -0.74
TPM1-231	ENST00000561395		A0A0G2JS52	829 aa		10.4	□□□□□ -0.74
TPM1-231	ENST00000561395	MYT1	Q01538	1121 aa		10.4	□□□□□ -0.74
TPM1-231	ENST00000561395	TNS3	Q68CZ2	1445 aa		10.4	□□□□□ -0.75
TPM1-231	ENST00000561395	CRYBG1	Q9Y4K1	1723 aa		10.39	□□□□□ -0.75
TPM1-231	ENST00000561395	MYOM1	P52179	1685 aa		10.39	□□□□□ -0.75
TPM1-231	ENST00000561395	SLC24A1	O60721	1099 aa		10.39	□□□□□ -0.75
TPM1-231	ENST00000561395	SBNO2	Q9Y2G9	1366 aa		10.39	□□□□□ -0.75
TPM1-231	ENST00000561395	ANP32C	O43423	234 aa		10.38	□□□□□ -0.75
TPM1-231	ENST00000561395	HAP1	P54257	671 aa	Predicted RBP	10.38	□□□□□ -0.75
TPM1-231	ENST00000561395	NUTM2F	A1L443	756 aa		10.37	□□□□□ -0.75
TPM1-231	ENST00000561395	TMF1	P82094	1093 aa		10.37	□□□□□ -0.75
TPM1-231	ENST00000561395	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.37	□□□□□ -0.75
TPM1-231	ENST00000561395	ALS2	Q96Q42	1657 aa		10.37	□□□□□ -0.75
TPM1-231	ENST00000561395	EZH2	Q15910	746 aa	Known RBP	10.36	□□□□□ -0.75
TPM1-231	ENST00000561395	FAM98C	Q17RN3	349 aa	Known RBP	10.36	□□□□□ -0.75
TPM1-231	ENST00000561395	FAM182B	Q5T319	152 aa		10.36	□□□□□ -0.75
TPM1-231	ENST00000561395	POLR3GL	Q9BT43	218 aa		10.36	□□□□□ -0.75
TPM1-231	ENST00000561395	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.35	□□□□□ -0.75
TPM1-231	ENST00000561395	CABLES1	Q8TDN4	633 aa		10.35	□□□□□ -0.75
TPM1-231	ENST00000561395	CASZ1	Q86V15	1759 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	DLC1	Q96QB1	1528 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	CCER2	I3L3R5	266 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	PLEKHG5	O94827	1062 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	IFFO2	Q5TF58	517 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	TMEM132E	Q6IEE7	984 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	NINL	Q9Y2I6	1382 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	RGPD4	Q7Z3J3	1758 aa		10.34	□□□□□ -0.75
TPM1-231	ENST00000561395	TECPR2	O15040	1411 aa		10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	CDCA8	Q53HL2	280 aa		10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	KRT28	Q7Z3Y7	464 aa		10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	TRAK1	Q9UPV9	953 aa		10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	PARD3	Q8TEW0	1356 aa		10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	NRK	Q7Z2Y5	1582 aa		10.33	□□□□□ -0.76
TPM1-231	ENST00000561395	SENP3-EIF4A1	A0A087X0R7	540 aa		10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	ATXN8OS	P0DMR3	200 aa		10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	CAMKK2	Q96RR4	588 aa		10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	RTN4	Q9NQC3	1192 aa	Known RBP	10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	SBF2	Q86WG5	1849 aa		10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	TULP4	Q9NRJ4	1543 aa		10.32	□□□□□ -0.76
TPM1-231	ENST00000561395	SBNO1	A3KN83	1393 aa		10.31	□□□□□ -0.76
TPM1-231	ENST00000561395	ARHGEF10	O15013	1369 aa		10.31	□□□□□ -0.76
TPM1-231	ENST00000561395	FAM83G	A6ND36	823 aa		10.31	□□□□□ -0.76
TPM1-231	ENST00000561395	RNF39	Q9H2S5	420 aa		10.31	□□□□□ -0.76
TPM1-231	ENST00000561395	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.31	□□□□□ -0.76
TPM1-231	ENST00000561395	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.31	□□□□□ -0.76
TPM1-231	ENST00000561395	PLEKHH1	Q9ULM0	1364 aa		10.3	□□□□□ -0.76
TPM1-231	ENST00000561395	WAPL	Q7Z5K2	1190 aa		10.3	□□□□□ -0.76
TPM1-231	ENST00000561395	BTG4	Q9NY30	223 aa		10.3	□□□□□ -0.76
TPM1-231	ENST00000561395	TRIM37	O94972	964 aa		10.29	□□□□□ -0.76
TPM1-231	ENST00000561395	LMOD2	Q6P5Q4	547 aa		10.29	□□□□□ -0.76
TPM1-231	ENST00000561395	SPATA31A5	Q5VU36	1347 aa		10.29	□□□□□ -0.76
TPM1-231	ENST00000561395	SPATA31A7	Q8IWB4	1347 aa		10.29	□□□□□ -0.76
TPM1-231	ENST00000561395	KTN1	Q86UP2	1357 aa	Known RBP	10.28	□□□□□ -0.76
TPM1-231	ENST00000561395	ABCC11	Q96J66	1382 aa		10.28	□□□□□ -0.76
TPM1-231	ENST00000561395	PSME1	Q06323	249 aa		10.28	□□□□□ -0.76
TPM1-231	ENST00000561395	ZNF784	Q8NCA9	323 aa	Predicted RBP	10.28	□□□□□ -0.76
TPM1-231	ENST00000561395	SPON1	Q9HCB6	807 aa		10.28	□□□□□ -0.76
TPM1-231	ENST00000561395	STK26	Q9P289	416 aa		10.28	□□□□□ -0.76
TPM1-231	ENST00000561395	PARP4	Q9UKK3	1724 aa	Known RBP	10.27	□□□□□ -0.76
TPM1-231	ENST00000561395	PER1	O15534	1290 aa	Predicted RBP	10.27	□□□□□ -0.77
TPM1-231	ENST00000561395	APBA3	O96018	575 aa		10.27	□□□□□ -0.77
TPM1-231	ENST00000561395	YTHDC1	Q96MU7	727 aa	Known RBP	10.27	□□□□□ -0.77
TPM1-231	ENST00000561395	PHF8	Q9UPP1	1060 aa		10.27	□□□□□ -0.77
TPM1-231	ENST00000561395	KCNQ2	O43526	872 aa		10.26	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms