RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 ZNF692Q9BU19 519 aaPredicted RBP15.31■□□□□ 0.04
SNX1-212ENST00000560861 MST1RQ04912 1400 aa15.3■□□□□ 0.04
SNX1-212ENST00000560861 ZNF335Q9H4Z2 1342 aaPredicted RBP15.3■□□□□ 0.04
SNX1-212ENST00000560861 MARF1Q9Y4F3 1742 aaKnown RBP15.29■□□□□ 0.04
SNX1-212ENST00000560861 KIF1AQ12756 1690 aa15.29■□□□□ 0.04
SNX1-212ENST00000560861 C19orf44Q9H6X5 657 aa15.29■□□□□ 0.04
SNX1-212ENST00000560861 C1orf167Q5SNV9 1468 aa15.28■□□□□ 0.04
SNX1-212ENST00000560861 MORC1Q86VD1 984 aa15.28■□□□□ 0.04
SNX1-212ENST00000560861 GGNBP2Q9H3C7 697 aa15.28■□□□□ 0.04
SNX1-212ENST00000560861 PIK3C2AO00443 1686 aa15.28■□□□□ 0.04
SNX1-212ENST00000560861 SHPRHQ149N8 1683 aa15.28■□□□□ 0.04
SNX1-212ENST00000560861 OVOS2A0A0J9YW53 1432 aa15.27■□□□□ 0.04
SNX1-212ENST00000560861 OVOS2Q6IE36 1432 aa15.27■□□□□ 0.04
SNX1-212ENST00000560861 TTC21BQ7Z4L5 1316 aa15.27■□□□□ 0.04
SNX1-212ENST00000560861 YTHDC1Q96MU7 727 aaKnown RBP15.27■□□□□ 0.04
SNX1-212ENST00000560861 INSRP06213 1382 aa15.26■□□□□ 0.03
SNX1-212ENST00000560861 SCAF1Q9H7N4 1312 aaKnown RBP15.26■□□□□ 0.03
SNX1-212ENST00000560861 NME9Q86XW9 330 aa15.26■□□□□ 0.03
SNX1-212ENST00000560861 PMFBP1Q8TBY8 1022 aa15.26■□□□□ 0.03
SNX1-212ENST00000560861 PHF8Q9UPP1 1060 aa15.26■□□□□ 0.03
SNX1-212ENST00000560861 TRPM3Q9HCF6 1732 aaPredicted RBP15.26■□□□□ 0.03
SNX1-212ENST00000560861 COL3A1P02461 1466 aaPredicted RBP15.25■□□□□ 0.03
SNX1-212ENST00000560861 SMG6Q86US8 1419 aaKnown RBP15.25■□□□□ 0.03
SNX1-212ENST00000560861 USP31Q70CQ4 1352 aa15.24■□□□□ 0.03
SNX1-212ENST00000560861 TTC21AQ8NDW8 1320 aa15.24■□□□□ 0.03
SNX1-212ENST00000560861 C14orf37Q86TY3 774 aa15.24■□□□□ 0.03
SNX1-212ENST00000560861 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.24■□□□□ 0.03
SNX1-212ENST00000560861 MAP2P11137 1827 aaKnown RBP15.24■□□□□ 0.03
SNX1-212ENST00000560861 ZRANB1Q9UGI0 708 aa15.23■□□□□ 0.03
SNX1-212ENST00000560861 MSH6P52701 1360 aa15.23■□□□□ 0.03
SNX1-212ENST00000560861 AATKQ6ZMQ8 1374 aa15.23■□□□□ 0.03
SNX1-212ENST00000560861 FAM9BQ8IZU0 186 aa15.22■□□□□ 0.03
SNX1-212ENST00000560861 NGDNQ8NEJ9 315 aaKnown RBP15.22■□□□□ 0.03
SNX1-212ENST00000560861 BLMP54132 1417 aaPredicted RBP15.22■□□□□ 0.03
SNX1-212ENST00000560861 ORAI2Q96SN7 254 aa15.21■□□□□ 0.03
SNX1-212ENST00000560861 PNPLA6Q8IY17 1366 aa15.2■□□□□ 0.02
SNX1-212ENST00000560861 ESCO1Q5FWF5 840 aa15.19■□□□□ 0.02
SNX1-212ENST00000560861 CADPS2Q86UW7 1296 aa15.19■□□□□ 0.02
SNX1-212ENST00000560861 ALS2Q96Q42 1657 aa15.19■□□□□ 0.02
SNX1-212ENST00000560861 ATF3P18847 181 aa15.18■□□□□ 0.02
SNX1-212ENST00000560861 TNNT2P45379 298 aaPredicted RBP15.18■□□□□ 0.02
SNX1-212ENST00000560861 MTHFSP49914 203 aa15.18■□□□□ 0.02
SNX1-212ENST00000560861 CDK12Q9NYV4 1490 aaPredicted RBP15.18■□□□□ 0.02
SNX1-212ENST00000560861 PEAK1Q9H792 1746 aa15.17■□□□□ 0.02
SNX1-212ENST00000560861 COG3Q96JB2 828 aa15.17■□□□□ 0.02
SNX1-212ENST00000560861 POLKQ9UBT6 870 aa15.17■□□□□ 0.02
SNX1-212ENST00000560861 PXDNQ92626 1479 aa15.15■□□□□ 0.02
SNX1-212ENST00000560861 SLIT3O75094 1523 aa15.15■□□□□ 0.02
SNX1-212ENST00000560861 NFAT5O94916 1531 aa15.14■□□□□ 0.01
SNX1-212ENST00000560861 FBLN1P23142 703 aa15.14■□□□□ 0.01
SNX1-212ENST00000560861 HNRNPUQ00839 825 aaKnown RBP eCLIP15.14■□□□□ 0.01
SNX1-212ENST00000560861 ADAMTS8Q9UP79 889 aa15.14■□□□□ 0.01
SNX1-212ENST00000560861 NHSL1Q5SYE7 1610 aa15.14■□□□□ 0.01
SNX1-212ENST00000560861 FOXO3O43524 673 aa15.13■□□□□ 0.01
SNX1-212ENST00000560861 CENPBP07199 599 aaPredicted RBP15.13■□□□□ 0.01
SNX1-212ENST00000560861 CRYBG1Q9Y4K1 1723 aa15.13■□□□□ 0.01
SNX1-212ENST00000560861 ZBED9Q6R2W3 1325 aa15.13■□□□□ 0.01
SNX1-212ENST00000560861 CFAP53Q96M91 514 aa15.12■□□□□ 0.01
SNX1-212ENST00000560861 PHRF1Q9P1Y6 1649 aaKnown RBP15.12■□□□□ 0.01
SNX1-212ENST00000560861 SBNO1A3KN83 1393 aa15.11■□□□□ 0.01
SNX1-212ENST00000560861 PSME1Q06323 249 aa15.11■□□□□ 0.01
SNX1-212ENST00000560861 BRINP3Q76B58 766 aa15.11■□□□□ 0.01
SNX1-212ENST00000560861 KRT28Q7Z3Y7 464 aa15.11■□□□□ 0.01
SNX1-212ENST00000560861 EMILIN1Q9Y6C2 1016 aa15.11■□□□□ 0.01
SNX1-212ENST00000560861 RGPD1P0DJD0 1748 aa15.1■□□□□ 0.01
SNX1-212ENST00000560861 UBAP1LF5GYI3 381 aa15.1■□□□□ 0.01
SNX1-212ENST00000560861 WDR43Q15061 677 aaKnown RBP eCLIP15.1■□□□□ 0.01
SNX1-212ENST00000560861 SLAIN2Q9P270 581 aa15.1■□□□□ 0.01
SNX1-212ENST00000560861 USP19O94966 1318 aa15.1■□□□□ 0.01
SNX1-212ENST00000560861 MED1Q15648 1581 aaPredicted RBP15.1■□□□□ 0.01
SNX1-212ENST00000560861 LTN1O94822 1766 aa15.09■□□□□ 0.01
SNX1-212ENST00000560861 NLRP6P59044 892 aa15.09■□□□□ 0.01
SNX1-212ENST00000560861 ABTB2Q8N961 1025 aa15.09■□□□□ 0.01
SNX1-212ENST00000560861 XPCQ01831 940 aaPredicted RBP15.08■□□□□ 0
SNX1-212ENST00000560861 RRS1Q15050 365 aaKnown RBP15.08■□□□□ 0
SNX1-212ENST00000560861 MAP3K19Q56UN5 1328 aa15.08■□□□□ 0
SNX1-212ENST00000560861 NPHP3Q7Z494 1330 aa15.08■□□□□ 0
SNX1-212ENST00000560861 KIF24Q5T7B8 1368 aa15.08■□□□□ 0
SNX1-212ENST00000560861 TNS3Q68CZ2 1445 aa15.08■□□□□ 0
SNX1-212ENST00000560861 PAK3O75914 559 aaPredicted RBP15.06■□□□□ 0
SNX1-212ENST00000560861 IL13P35225 146 aa15.06■□□□□ 0
SNX1-212ENST00000560861 DDX17Q92841 729 aaKnown RBP15.06■□□□□ 0
SNX1-212ENST00000560861 SOS2Q07890 1332 aaPredicted RBP15.06■□□□□ 0
SNX1-212ENST00000560861 DIAPH1O60610 1272 aaKnown RBP15.05■□□□□ -0
SNX1-212ENST00000560861 NUTM2GQ5VZR2 741 aa15.05■□□□□ -0
SNX1-212ENST00000560861 SPATA31A3Q5VYP0 1347 aa15.05■□□□□ -0
SNX1-212ENST00000560861 AHDC1Q5TGY3 1603 aaPredicted RBP15.05■□□□□ -0
SNX1-212ENST00000560861 ROBO1Q9Y6N7 1651 aa15.04■□□□□ -0
SNX1-212ENST00000560861 RTL1A6NKG5 1358 aa15.04■□□□□ -0
SNX1-212ENST00000560861 FLT4P35916 1363 aa15.04■□□□□ -0
SNX1-212ENST00000560861 ABCA3Q99758 1704 aa15.03■□□□□ -0
SNX1-212ENST00000560861 ILDR2Q71H61 639 aa15.03■□□□□ -0
SNX1-212ENST00000560861 ZNF521Q96K83 1311 aa15.02■□□□□ -0
SNX1-212ENST00000560861 NUDCQ9Y266 331 aa15.02■□□□□ -0
SNX1-212ENST00000560861 COL18A1P39060 1754 aa15.02□□□□□ -0.01
SNX1-212ENST00000560861 ARHGEF10O15013 1369 aa15.01□□□□□ -0.01
SNX1-212ENST00000560861 EIF4A2Q14240 407 aaKnown RBP15.01□□□□□ -0.01
SNX1-212ENST00000560861 CCDC146Q8IYE0 955 aa15.01□□□□□ -0.01
SNX1-212ENST00000560861 KCNH5Q8NCM2 988 aa15.01□□□□□ -0.01
SNX1-212ENST00000560861 PLEKHF1Q96S99 279 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms