RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ALS2Q96Q42 1657 aa26.41■■□□□ 1.82
TSPAN3-208ENST00000560514 PAK3O75914 559 aaPredicted RBP26.4■■□□□ 1.82
TSPAN3-208ENST00000560514 HIRIP3Q9BW71 556 aaPredicted RBP26.4■■□□□ 1.82
TSPAN3-208ENST00000560514 PRDM11Q9NQV5 511 aa26.4■■□□□ 1.82
TSPAN3-208ENST00000560514 DISP2A7MBM2 1401 aa26.39■■□□□ 1.82
TSPAN3-208ENST00000560514 NGDNQ8NEJ9 315 aaKnown RBP26.39■■□□□ 1.82
TSPAN3-208ENST00000560514 ACIN1Q9UKV3 1341 aaKnown RBP26.39■■□□□ 1.81
TSPAN3-208ENST00000560514 TNS1Q9HBL0 1735 aaKnown RBP26.37■■□□□ 1.81
TSPAN3-208ENST00000560514 EZH2Q15910 746 aaKnown RBP26.37■■□□□ 1.81
TSPAN3-208ENST00000560514 MINK1Q8N4C8 1332 aaPredicted RBP26.37■■□□□ 1.81
TSPAN3-208ENST00000560514 THSD7AQ9UPZ6 1657 aa26.36■■□□□ 1.81
TSPAN3-208ENST00000560514 TRAK1Q9UPV9 953 aa26.36■■□□□ 1.81
TSPAN3-208ENST00000560514 TRIM37O94972 964 aa26.35■■□□□ 1.81
TSPAN3-208ENST00000560514 FAM196AQ6ZSG2 479 aa26.35■■□□□ 1.81
TSPAN3-208ENST00000560514 TULP4Q9NRJ4 1543 aa26.33■■□□□ 1.81
TSPAN3-208ENST00000560514 WASLO00401 505 aaPredicted RBP26.31■■□□□ 1.8
TSPAN3-208ENST00000560514 APBA3O96018 575 aa26.31■■□□□ 1.8
TSPAN3-208ENST00000560514 STRN4Q9NRL3 753 aa26.31■■□□□ 1.8
TSPAN3-208ENST00000560514 SPATA31A1Q5TZJ5 1347 aa26.31■■□□□ 1.8
TSPAN3-208ENST00000560514 PRR36Q9H6K5 1346 aa26.31■■□□□ 1.8
TSPAN3-208ENST00000560514 CAMKK2Q96RR4 588 aa26.3■■□□□ 1.8
TSPAN3-208ENST00000560514 CRYBG1Q9Y4K1 1723 aa26.3■■□□□ 1.8
TSPAN3-208ENST00000560514 PARD3Q8TEW0 1356 aa26.3■■□□□ 1.8
TSPAN3-208ENST00000560514 KIAA0232Q92628 1395 aa26.28■■□□□ 1.8
TSPAN3-208ENST00000560514 EVA1CP58658 441 aa26.27■■□□□ 1.8
TSPAN3-208ENST00000560514 PDE3BQ13370 1112 aa26.27■■□□□ 1.8
TSPAN3-208ENST00000560514 CHRNA2Q15822 529 aa26.27■■□□□ 1.8
TSPAN3-208ENST00000560514 USP35Q9P2H5 1018 aa26.27■■□□□ 1.8
TSPAN3-208ENST00000560514 ADGRB1O14514 1584 aa26.26■■□□□ 1.79
TSPAN3-208ENST00000560514 NBPF8Q3BBV2 869 aa26.26■■□□□ 1.79
TSPAN3-208ENST00000560514 NBPF14Q5TI25 921 aa26.26■■□□□ 1.79
TSPAN3-208ENST00000560514 ITSN1Q15811 1721 aa26.25■■□□□ 1.79
TSPAN3-208ENST00000560514 YY1P25490 414 aa26.24■■□□□ 1.79
TSPAN3-208ENST00000560514 ZC3H6P61129 1189 aaKnown RBP26.24■■□□□ 1.79
TSPAN3-208ENST00000560514 KDM2AQ9Y2K7 1162 aa26.23■■□□□ 1.79
TSPAN3-208ENST00000560514 DCAF8L1A6NGE4 600 aa26.22■■□□□ 1.79
TSPAN3-208ENST00000560514 PPP1R1BQ9UD71 204 aaPredicted RBP26.21■■□□□ 1.79
TSPAN3-208ENST00000560514 PHRF1Q9P1Y6 1649 aaKnown RBP26.21■■□□□ 1.79
TSPAN3-208ENST00000560514 ATP7BP35670 1465 aa26.2■■□□□ 1.78
TSPAN3-208ENST00000560514 NUTM2GQ5VZR2 741 aa26.2■■□□□ 1.78
TSPAN3-208ENST00000560514 NUDT16Q96DE0 195 aaKnown RBP26.2■■□□□ 1.78
TSPAN3-208ENST00000560514 BARGINQ6ZT62 677 aa26.19■■□□□ 1.78
TSPAN3-208ENST00000560514 DCAF11Q8TEB1 546 aa26.18■■□□□ 1.78
TSPAN3-208ENST00000560514 RREB1Q92766 1687 aa26.18■■□□□ 1.78
TSPAN3-208ENST00000560514 SSH2Q76I76 1423 aa26.16■■□□□ 1.78
TSPAN3-208ENST00000560514 NUP188Q5SRE5 1749 aa26.16■■□□□ 1.78
TSPAN3-208ENST00000560514 TCP11L2Q8N4U5 519 aa26.15■■□□□ 1.78
TSPAN3-208ENST00000560514 SPON1Q9HCB6 807 aa26.15■■□□□ 1.78
TSPAN3-208ENST00000560514 STAC3Q96MF2 364 aa26.14■■□□□ 1.78
TSPAN3-208ENST00000560514 LARP1Q6PKG0 1096 aaKnown RBP26.12■■□□□ 1.77
TSPAN3-208ENST00000560514 C11orf95C9JLR9 678 aaPredicted RBP26.11■■□□□ 1.77
TSPAN3-208ENST00000560514 ABTB2Q8N961 1025 aa26.11■■□□□ 1.77
TSPAN3-208ENST00000560514 ARHGEF28Q8N1W1 1705 aaKnown RBP26.11■■□□□ 1.77
TSPAN3-208ENST00000560514 CDK19Q9BWU1 502 aa26.1■■□□□ 1.77
TSPAN3-208ENST00000560514 THRAP3Q9Y2W1 955 aaKnown RBP26.1■■□□□ 1.77
TSPAN3-208ENST00000560514 ACEP12821 1306 aa26.1■■□□□ 1.77
TSPAN3-208ENST00000560514 KCNQ2O43526 872 aa26.09■■□□□ 1.77
TSPAN3-208ENST00000560514 CCDC61Q9Y6R9 512 aa26.08■■□□□ 1.77
TSPAN3-208ENST00000560514 CAMTA1Q9Y6Y1 1673 aa26.08■■□□□ 1.77
TSPAN3-208ENST00000560514 POLR3AO14802 1390 aaPredicted RBP26.07■■□□□ 1.76
TSPAN3-208ENST00000560514 NRKQ7Z2Y5 1582 aa26.07■■□□□ 1.76
TSPAN3-208ENST00000560514 NINLQ9Y2I6 1382 aa26.06■■□□□ 1.76
TSPAN3-208ENST00000560514 CPDO75976 1380 aa26.05■■□□□ 1.76
TSPAN3-208ENST00000560514 NLRP13Q86W25 1043 aa26.04■■□□□ 1.76
TSPAN3-208ENST00000560514 RAB3GAP2Q9H2M9 1393 aa26.04■■□□□ 1.76
TSPAN3-208ENST00000560514 TOPAZ1Q8N9V7 1692 aa26.03■■□□□ 1.76
TSPAN3-208ENST00000560514 LMO7Q8WWI1 1683 aa26.03■■□□□ 1.76
TSPAN3-208ENST00000560514 PARP4Q9UKK3 1724 aaKnown RBP26.02■■□□□ 1.76
TSPAN3-208ENST00000560514 PLEKHG3A1L390 1219 aa26.02■■□□□ 1.76
TSPAN3-208ENST00000560514 ZBTB7CA1YPR0 619 aa26.01■■□□□ 1.75
TSPAN3-208ENST00000560514 OVOS2A0A0G2JMS6 1433 aa26■■□□□ 1.75
TSPAN3-208ENST00000560514 OVOS2A0A0J9YW53 1432 aa26■■□□□ 1.75
TSPAN3-208ENST00000560514 OVOS2Q6IE36 1432 aa26■■□□□ 1.75
TSPAN3-208ENST00000560514 USP19O94966 1318 aa26■■□□□ 1.75
TSPAN3-208ENST00000560514 GCP02774 474 aa26■■□□□ 1.75
TSPAN3-208ENST00000560514 COL5A2P05997 1499 aaPredicted RBP25.98■■□□□ 1.75
TSPAN3-208ENST00000560514 CRB1P82279 1406 aa25.97■■□□□ 1.75
TSPAN3-208ENST00000560514 PLSCR1O15162 318 aa25.96■■□□□ 1.75
TSPAN3-208ENST00000560514 SRPK2P78362 688 aaKnown RBP25.96■■□□□ 1.75
TSPAN3-208ENST00000560514 DDB1Q16531 1140 aa25.96■■□□□ 1.75
TSPAN3-208ENST00000560514 RGPD3A6NKT7 1758 aaPredicted RBP25.96■■□□□ 1.75
TSPAN3-208ENST00000560514 RGPD4Q7Z3J3 1758 aa25.96■■□□□ 1.75
TSPAN3-208ENST00000560514 SBF2Q86WG5 1849 aa25.93■■□□□ 1.74
TSPAN3-208ENST00000560514 TOM1L2Q6ZVM7 507 aa25.93■■□□□ 1.74
TSPAN3-208ENST00000560514 BCL11BQ9C0K0 894 aaPredicted RBP25.93■■□□□ 1.74
TSPAN3-208ENST00000560514 PPIP5K1Q6PFW1 1433 aa25.93■■□□□ 1.74
TSPAN3-208ENST00000560514 PEAK1Q9H792 1746 aa25.91■■□□□ 1.74
TSPAN3-208ENST00000560514 NLRP6P59044 892 aa25.9■■□□□ 1.74
TSPAN3-208ENST00000560514 BRD4O60885 1362 aaPredicted RBP25.9■■□□□ 1.74
TSPAN3-208ENST00000560514 LRRC37A3O60309 1634 aa25.89■■□□□ 1.74
TSPAN3-208ENST00000560514 ANO8Q9HCE9 1232 aaPredicted RBP25.89■■□□□ 1.74
TSPAN3-208ENST00000560514 AATKQ6ZMQ8 1374 aa25.88■■□□□ 1.73
TSPAN3-208ENST00000560514 KIAA1210Q9ULL0 1709 aa25.88■■□□□ 1.73
TSPAN3-208ENST00000560514 ZBTB7AO95365 584 aa25.87■■□□□ 1.73
TSPAN3-208ENST00000560514 CASZ1Q86V15 1759 aa25.87■■□□□ 1.73
TSPAN3-208ENST00000560514 CDCA7Q9BWT1 371 aaPredicted RBP25.86■■□□□ 1.73
TSPAN3-208ENST00000560514 CABP2Q9NPB3 220 aa25.86■■□□□ 1.73
TSPAN3-208ENST00000560514 AKAP12Q02952 1782 aa25.84■■□□□ 1.73
TSPAN3-208ENST00000560514 STK32BQ9NY57 414 aa25.84■■□□□ 1.73
TSPAN3-208ENST00000560514 CENPJQ9HC77 1338 aaPredicted RBP25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms