RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 POM121CA8CG34 1229 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 NUTM2EB1AL46 878 aaPredicted RBP7.76□□□□□ -1.17
TPM1-222ENST00000560131 NDUFV2P19404 249 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 IRF5Q13568 498 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 RTL5Q5HYW3 569 aaPredicted RBP7.76□□□□□ -1.17
TPM1-222ENST00000560131 NUTM2DQ5VT03 806 aaPredicted RBP7.76□□□□□ -1.17
TPM1-222ENST00000560131 NUTM2AQ8IVF1 878 aaPredicted RBP7.76□□□□□ -1.17
TPM1-222ENST00000560131 SLF2Q8IX21 1173 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 CRIPAKQ8N1N5 446 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 GLMNQ92990 594 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 PCDHB15Q9Y5E8 787 aa7.76□□□□□ -1.17
TPM1-222ENST00000560131 PRPF38BQ5VTL8 546 aaKnown RBP7.75□□□□□ -1.17
TPM1-222ENST00000560131 NUDT18Q6ZVK8 323 aa7.75□□□□□ -1.17
TPM1-222ENST00000560131 GMPR2Q9P2T1 348 aaKnown RBP7.75□□□□□ -1.17
TPM1-222ENST00000560131 DACH1Q9UI36 760 aa7.75□□□□□ -1.17
TPM1-222ENST00000560131 PPEF1O14829 653 aaPredicted RBP7.74□□□□□ -1.17
TPM1-222ENST00000560131 PRR14Q9BWN1 585 aa7.74□□□□□ -1.17
TPM1-222ENST00000560131 TMEM134Q9H6X4 195 aa7.74□□□□□ -1.17
TPM1-222ENST00000560131 PCDHB3Q9Y5E6 796 aa7.74□□□□□ -1.17
TPM1-222ENST00000560131 RB1CC1Q8TDY2 1594 aa7.74□□□□□ -1.17
TPM1-222ENST00000560131 FAM181BA6NEQ2 426 aa7.73□□□□□ -1.17
TPM1-222ENST00000560131 USP17L8P0C7I0 530 aa7.73□□□□□ -1.17
TPM1-222ENST00000560131 DIEXFQ68CQ4 756 aaKnown RBP7.73□□□□□ -1.17
TPM1-222ENST00000560131 GZF1Q9H116 711 aaPredicted RBP7.73□□□□□ -1.17
TPM1-222ENST00000560131 KDM4AO75164 1064 aa7.72□□□□□ -1.17
TPM1-222ENST00000560131 SLC4A3P48751 1232 aa7.72□□□□□ -1.17
TPM1-222ENST00000560131 WASHC4Q2M389 1173 aa7.72□□□□□ -1.17
TPM1-222ENST00000560131 SWT1Q5T5J6 900 aaKnown RBP7.72□□□□□ -1.17
TPM1-222ENST00000560131 HDGFL1Q5TGJ6 251 aa7.72□□□□□ -1.17
TPM1-222ENST00000560131 TMCO4Q5TGY1 634 aa7.72□□□□□ -1.17
TPM1-222ENST00000560131 NDUFB9Q9Y6M9 179 aa7.72□□□□□ -1.17
TPM1-222ENST00000560131 WRNQ14191 1432 aaPredicted RBP eCLIP7.71□□□□□ -1.17
TPM1-222ENST00000560131 PATL2C9JE40 543 aaKnown RBP7.71□□□□□ -1.18
TPM1-222ENST00000560131 AXIN1O15169 862 aa7.71□□□□□ -1.18
TPM1-222ENST00000560131 USP46P62068 366 aa7.71□□□□□ -1.18
TPM1-222ENST00000560131 CABLES1Q8TDN4 633 aa7.71□□□□□ -1.18
TPM1-222ENST00000560131 GJD4Q96KN9 370 aaPredicted RBP7.71□□□□□ -1.18
TPM1-222ENST00000560131 ZBTB3Q9H5J0 574 aa7.71□□□□□ -1.18
TPM1-222ENST00000560131 AVPP01185 164 aa7.7□□□□□ -1.18
TPM1-222ENST00000560131 RSPH4AQ5TD94 716 aa7.7□□□□□ -1.18
TPM1-222ENST00000560131 BLOC1S3Q6QNY0 202 aa7.7□□□□□ -1.18
TPM1-222ENST00000560131 RDH13Q8NBN7 331 aa7.7□□□□□ -1.18
TPM1-222ENST00000560131 PBXIP1Q96AQ6 731 aa7.7□□□□□ -1.18
TPM1-222ENST00000560131 S1PR4O95977 384 aa7.69□□□□□ -1.18
TPM1-222ENST00000560131 RGS22Q8NE09 1264 aa7.69□□□□□ -1.18
TPM1-222ENST00000560131 FDX1P10109 184 aa7.68□□□□□ -1.18
TPM1-222ENST00000560131 GCGRP47871 477 aa7.68□□□□□ -1.18
TPM1-222ENST00000560131 FOXC1Q12948 553 aa7.68□□□□□ -1.18
TPM1-222ENST00000560131 SUZ12Q15022 739 aaKnown RBP7.68□□□□□ -1.18
TPM1-222ENST00000560131 CTC1Q2NKJ3 1217 aa7.68□□□□□ -1.18
TPM1-222ENST00000560131 PKD2L1Q9P0L9 805 aa7.68□□□□□ -1.18
TPM1-222ENST00000560131 RSF1Q96T23 1441 aaPredicted RBP7.68□□□□□ -1.18
TPM1-222ENST00000560131 TERTO14746 1132 aaKnown RBP7.67□□□□□ -1.18
TPM1-222ENST00000560131 HOXA2O43364 376 aa7.67□□□□□ -1.18
TPM1-222ENST00000560131 TLL1O43897 1013 aa7.67□□□□□ -1.18
TPM1-222ENST00000560131 MFAP1P55081 439 aaKnown RBP7.67□□□□□ -1.18
TPM1-222ENST00000560131 ADAMTS19Q8TE59 1207 aa7.67□□□□□ -1.18
TPM1-222ENST00000560131 USTQ9Y2C2 406 aa7.67□□□□□ -1.18
TPM1-222ENST00000560131 BRD1O95696 1058 aa7.66□□□□□ -1.18
TPM1-222ENST00000560131 CSB-PGBD3P0DP91 1061 aa7.66□□□□□ -1.18
TPM1-222ENST00000560131 RFX1P22670 979 aa7.66□□□□□ -1.18
TPM1-222ENST00000560131 SMCPP49901 116 aaPredicted RBP7.66□□□□□ -1.18
TPM1-222ENST00000560131 SRPK2P78362 688 aaKnown RBP7.66□□□□□ -1.18
TPM1-222ENST00000560131 CTDSPL2Q05D32 466 aa7.66□□□□□ -1.18
TPM1-222ENST00000560131 CFAP70Q5T0N1 1121 aa7.66□□□□□ -1.18
TPM1-222ENST00000560131 LCE2CQ5TA81 110 aa7.66□□□□□ -1.18
TPM1-222ENST00000560131 KCNA1Q09470 495 aa7.65□□□□□ -1.18
TPM1-222ENST00000560131 TRIM34Q9BYJ4 488 aa7.65□□□□□ -1.18
TPM1-222ENST00000560131 PPP1R12CQ9BZL4 782 aa7.65□□□□□ -1.18
TPM1-222ENST00000560131 PCDHGC3Q9UN70 934 aa7.65□□□□□ -1.18
TPM1-222ENST00000560131 MTMR7Q9Y216 660 aa7.65□□□□□ -1.18
TPM1-222ENST00000560131 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.64□□□□□ -1.19
TPM1-222ENST00000560131 HELBQ8NG08 1087 aaPredicted RBP7.64□□□□□ -1.19
TPM1-222ENST00000560131 ALG2Q9H553 416 aa7.64□□□□□ -1.19
TPM1-222ENST00000560131 HMX1Q9NP08 348 aaPredicted RBP7.64□□□□□ -1.19
TPM1-222ENST00000560131 VAC14Q08AM6 782 aa7.63□□□□□ -1.19
TPM1-222ENST00000560131 MTMR2Q13614 643 aa7.63□□□□□ -1.19
TPM1-222ENST00000560131 CCER1Q8TC90 406 aaPredicted RBP7.63□□□□□ -1.19
TPM1-222ENST00000560131 TOR4AQ9NXH8 423 aa7.63□□□□□ -1.19
TPM1-222ENST00000560131 GPR37L1O60883 481 aa7.62□□□□□ -1.19
TPM1-222ENST00000560131 PLA2G2CQ5R387 149 aa7.62□□□□□ -1.19
TPM1-222ENST00000560131 CYP4X1Q8N118 509 aa7.62□□□□□ -1.19
TPM1-222ENST00000560131 PALM3A6NDB9 673 aaPredicted RBP7.61□□□□□ -1.19
TPM1-222ENST00000560131 ADH1BP00325 375 aa7.61□□□□□ -1.19
TPM1-222ENST00000560131 SLC10A3P09131 477 aa7.61□□□□□ -1.19
TPM1-222ENST00000560131 SOX11P35716 441 aa7.61□□□□□ -1.19
TPM1-222ENST00000560131 GUCA2AQ02747 115 aa7.61□□□□□ -1.19
TPM1-222ENST00000560131 SLC6A16Q9GZN6 736 aa7.61□□□□□ -1.19
TPM1-222ENST00000560131 SNRPBP14678 240 aaKnown RBP7.6□□□□□ -1.19
TPM1-222ENST00000560131 LMOD1P29536 600 aaPredicted RBP7.6□□□□□ -1.19
TPM1-222ENST00000560131 GRIPAP1Q4V328 841 aa7.6□□□□□ -1.19
TPM1-222ENST00000560131 LRRN4Q8WUT4 740 aa7.6□□□□□ -1.19
TPM1-222ENST00000560131 TSC1Q92574 1164 aa7.59□□□□□ -1.19
TPM1-222ENST00000560131 HLA-CQ95604 372 aa7.59□□□□□ -1.19
TPM1-222ENST00000560131 TFIP11Q9UBB9 837 aaKnown RBP7.59□□□□□ -1.19
TPM1-222ENST00000560131 EIF4G1Q04637 1599 aaKnown RBP7.59□□□□□ -1.2
TPM1-222ENST00000560131 CFAP99D6REC4 459 aa7.58□□□□□ -1.2
TPM1-222ENST00000560131 ACTN4O43707 911 aaKnown RBP7.58□□□□□ -1.2
TPM1-222ENST00000560131 KMT5BQ4FZB7 885 aa7.58□□□□□ -1.2
TPM1-222ENST00000560131 ZSCAN1Q8NBB4 408 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms