RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 BRWD3Q6RI45 1802 aa25.6■■□□□ 1.69
HDDC3-205ENST00000559898 CENPJQ9HC77 1338 aaPredicted RBP25.6■■□□□ 1.69
HDDC3-205ENST00000559898 NRAPQ86VF7 1730 aa25.6■■□□□ 1.69
HDDC3-205ENST00000559898 NWD2Q9ULI1 1742 aa25.6■■□□□ 1.69
HDDC3-205ENST00000559898 NUTM2GQ5VZR2 741 aa25.58■■□□□ 1.69
HDDC3-205ENST00000559898 CABP2Q9NPB3 220 aa25.58■■□□□ 1.69
HDDC3-205ENST00000559898 ACEP12821 1306 aa25.58■■□□□ 1.69
HDDC3-205ENST00000559898 POLR3AO14802 1390 aaPredicted RBP25.56■■□□□ 1.68
HDDC3-205ENST00000559898 PHRF1Q9P1Y6 1649 aaKnown RBP25.55■■□□□ 1.68
HDDC3-205ENST00000559898 CCDC61Q9Y6R9 512 aa25.54■■□□□ 1.68
HDDC3-205ENST00000559898 PLEKHG3A1L390 1219 aa25.53■■□□□ 1.68
HDDC3-205ENST00000559898 SRPK2P78362 688 aaKnown RBP25.53■■□□□ 1.68
HDDC3-205ENST00000559898 EP400Q96L91 3159 aa25.52■■□□□ 1.68
HDDC3-205ENST00000559898 COL14A1Q05707 1796 aaKnown RBP25.52■■□□□ 1.68
HDDC3-205ENST00000559898 PPIP5K1Q6PFW1 1433 aa25.52■■□□□ 1.68
HDDC3-205ENST00000559898 VPS72Q15906 364 aa25.51■■□□□ 1.67
HDDC3-205ENST00000559898 BTG4Q9NY30 223 aa25.51■■□□□ 1.67
HDDC3-205ENST00000559898 ROCK2O75116 1388 aaKnown RBP25.5■■□□□ 1.67
HDDC3-205ENST00000559898 ATAD2Q6PL18 1390 aa25.5■■□□□ 1.67
HDDC3-205ENST00000559898 CCDC9Q9Y3X0 531 aaKnown RBP25.48■■□□□ 1.67
HDDC3-205ENST00000559898 CHRNA2Q15822 529 aa25.47■■□□□ 1.67
HDDC3-205ENST00000559898 SEPT12Q8IYM1 358 aa25.46■■□□□ 1.67
HDDC3-205ENST00000559898 KIAA0232Q92628 1395 aa25.45■■□□□ 1.67
HDDC3-205ENST00000559898 TRIM26Q12899 539 aaPredicted RBP25.45■■□□□ 1.66
HDDC3-205ENST00000559898 CABP1Q9NZU7 370 aa25.45■■□□□ 1.66
HDDC3-205ENST00000559898 NRKQ7Z2Y5 1582 aa25.44■■□□□ 1.66
HDDC3-205ENST00000559898 ZC3H6P61129 1189 aaKnown RBP25.44■■□□□ 1.66
HDDC3-205ENST00000559898 PRDM11Q9NQV5 511 aa25.43■■□□□ 1.66
HDDC3-205ENST00000559898 ONECUT3O60422 494 aaPredicted RBP25.41■■□□□ 1.66
HDDC3-205ENST00000559898 ABTB2Q8N961 1025 aa25.41■■□□□ 1.66
HDDC3-205ENST00000559898 FAM98CQ17RN3 349 aaKnown RBP25.4■■□□□ 1.66
HDDC3-205ENST00000559898 USP6P35125 1406 aa25.38■■□□□ 1.65
HDDC3-205ENST00000559898 USP19O94966 1318 aa25.37■■□□□ 1.65
HDDC3-205ENST00000559898 EVC2Q86UK5 1308 aa25.37■■□□□ 1.65
HDDC3-205ENST00000559898 AKAP12Q02952 1782 aa25.37■■□□□ 1.65
HDDC3-205ENST00000559898 PIK3C2AO00443 1686 aa25.37■■□□□ 1.65
HDDC3-205ENST00000559898 SPATA31A5Q5VU36 1347 aa25.37■■□□□ 1.65
HDDC3-205ENST00000559898 SPATA31A7Q8IWB4 1347 aa25.37■■□□□ 1.65
HDDC3-205ENST00000559898 TONSLQ96HA7 1378 aa25.36■■□□□ 1.65
HDDC3-205ENST00000559898 SSH2Q76I76 1423 aa25.36■■□□□ 1.65
HDDC3-205ENST00000559898 LMO7Q8WWI1 1683 aa25.36■■□□□ 1.65
HDDC3-205ENST00000559898 CAMTA1Q9Y6Y1 1673 aa25.36■■□□□ 1.65
HDDC3-205ENST00000559898 FAM182BQ5T319 152 aa25.35■■□□□ 1.65
HDDC3-205ENST00000559898 STRN4Q9NRL3 753 aa25.35■■□□□ 1.65
HDDC3-205ENST00000559898 THSD7AQ9UPZ6 1657 aa25.34■■□□□ 1.65
HDDC3-205ENST00000559898 A0A0G2JS52 829 aa25.33■■□□□ 1.65
HDDC3-205ENST00000559898 MYT1Q01538 1121 aa25.33■■□□□ 1.65
HDDC3-205ENST00000559898 KRT27Q7Z3Y8 459 aa25.33■■□□□ 1.65
HDDC3-205ENST00000559898 CARD11Q9BXL7 1154 aa25.33■■□□□ 1.65
HDDC3-205ENST00000559898 GCP02774 474 aa25.31■■□□□ 1.64
HDDC3-205ENST00000559898 DEFB132Q7Z7B7 95 aa25.31■■□□□ 1.64
HDDC3-205ENST00000559898 SPATA31A1Q5TZJ5 1347 aa25.3■■□□□ 1.64
HDDC3-205ENST00000559898 SLIT3O75094 1523 aa25.29■■□□□ 1.64
HDDC3-205ENST00000559898 NLRP13Q86W25 1043 aa25.29■■□□□ 1.64
HDDC3-205ENST00000559898 NLRP6P59044 892 aa25.28■■□□□ 1.64
HDDC3-205ENST00000559898 USP35Q9P2H5 1018 aa25.28■■□□□ 1.64
HDDC3-205ENST00000559898 CPDO75976 1380 aa25.28■■□□□ 1.64
HDDC3-205ENST00000559898 BLMP54132 1417 aaPredicted RBP25.28■■□□□ 1.64
HDDC3-205ENST00000559898 ZBTB7CA1YPR0 619 aa25.27■■□□□ 1.64
HDDC3-205ENST00000559898 LARP1Q6PKG0 1096 aaKnown RBP25.27■■□□□ 1.64
HDDC3-205ENST00000559898 TTC21BQ7Z4L5 1316 aa25.26■■□□□ 1.63
HDDC3-205ENST00000559898 CPSF1Q10570 1443 aaKnown RBP25.26■■□□□ 1.63
HDDC3-205ENST00000559898 CD163L1Q9NR16 1453 aa25.26■■□□□ 1.63
HDDC3-205ENST00000559898 MON2Q7Z3U7 1717 aa25.26■■□□□ 1.63
HDDC3-205ENST00000559898 COL18A1P39060 1754 aa25.26■■□□□ 1.63
HDDC3-205ENST00000559898 ZRANB1Q9UGI0 708 aa25.25■■□□□ 1.63
HDDC3-205ENST00000559898 BRD4O60885 1362 aaPredicted RBP25.24■■□□□ 1.63
HDDC3-205ENST00000559898 SBNO2Q9Y2G9 1366 aa25.24■■□□□ 1.63
HDDC3-205ENST00000559898 RGPD5Q99666 1765 aa25.23■■□□□ 1.63
HDDC3-205ENST00000559898 CCDC125Q86Z20 511 aa25.23■■□□□ 1.63
HDDC3-205ENST00000559898 COL5A2P05997 1499 aaPredicted RBP25.22■■□□□ 1.63
HDDC3-205ENST00000559898 EVA1CP58658 441 aa25.22■■□□□ 1.63
HDDC3-205ENST00000559898 SOX12O15370 315 aa25.21■■□□□ 1.63
HDDC3-205ENST00000559898 KTN1Q86UP2 1357 aaKnown RBP25.2■■□□□ 1.63
HDDC3-205ENST00000559898 SLC12A5Q9H2X9 1139 aa25.19■■□□□ 1.62
HDDC3-205ENST00000559898 AXIN2Q9Y2T1 843 aa25.19■■□□□ 1.62
HDDC3-205ENST00000559898 TESK2Q96S53 571 aa25.18■■□□□ 1.62
HDDC3-205ENST00000559898 ZNF692Q9BU19 519 aaPredicted RBP25.18■■□□□ 1.62
HDDC3-205ENST00000559898 TNS1Q9HBL0 1735 aaKnown RBP25.17■■□□□ 1.62
HDDC3-205ENST00000559898 ST20-MTHFSA0A0A6YYL1 179 aa25.17■■□□□ 1.62
HDDC3-205ENST00000559898 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.17■■□□□ 1.62
HDDC3-205ENST00000559898 NFAT5O94916 1531 aa25.17■■□□□ 1.62
HDDC3-205ENST00000559898 TMC1Q8TDI8 760 aa25.16■■□□□ 1.62
HDDC3-205ENST00000559898 NME9Q86XW9 330 aa25.15■■□□□ 1.62
HDDC3-205ENST00000559898 AATKQ6ZMQ8 1374 aa25.15■■□□□ 1.62
HDDC3-205ENST00000559898 RGPD1P0DJD0 1748 aa25.15■■□□□ 1.62
HDDC3-205ENST00000559898 TTC21AQ8NDW8 1320 aa25.13■■□□□ 1.61
HDDC3-205ENST00000559898 BARGINQ6ZT62 677 aa25.13■■□□□ 1.61
HDDC3-205ENST00000559898 ARHGEF25Q86VW2 580 aa25.13■■□□□ 1.61
HDDC3-205ENST00000559898 SF3B2Q13435 895 aaKnown RBP25.12■■□□□ 1.61
HDDC3-205ENST00000559898 TCP11L2Q8N4U5 519 aa25.12■■□□□ 1.61
HDDC3-205ENST00000559898 USP54Q70EL1 1684 aa25.11■■□□□ 1.61
HDDC3-205ENST00000559898 A0A1W2PP64 1363 aa25.11■■□□□ 1.61
HDDC3-205ENST00000559898 PCGF6Q9BYE7 350 aa25.11■■□□□ 1.61
HDDC3-205ENST00000559898 PARP4Q9UKK3 1724 aaKnown RBP25.11■■□□□ 1.61
HDDC3-205ENST00000559898 CRB1P82279 1406 aa25.11■■□□□ 1.61
HDDC3-205ENST00000559898 EN1Q05925 392 aaPredicted RBP25.1■■□□□ 1.61
HDDC3-205ENST00000559898 WNK3Q9BYP7 1800 aa25.09■■□□□ 1.61
HDDC3-205ENST00000559898 TRIM37O94972 964 aa25.08■■□□□ 1.61
HDDC3-205ENST00000559898 LTN1O94822 1766 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms