RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 ZNF692Q9BU19 519 aaPredicted RBP6.15□□□□□ -1.42
SNX1-205ENST00000559339 TRPC5Q9UL62 973 aaPredicted RBP6.15□□□□□ -1.42
SNX1-205ENST00000559339 ATAD2Q6PL18 1390 aa6.15□□□□□ -1.43
SNX1-205ENST00000559339 PPIP5K1Q6PFW1 1433 aa6.15□□□□□ -1.43
SNX1-205ENST00000559339 ATP7BP35670 1465 aa6.15□□□□□ -1.43
SNX1-205ENST00000559339 ARHGEF28Q8N1W1 1705 aaKnown RBP6.14□□□□□ -1.43
SNX1-205ENST00000559339 RBM6P78332 1123 aaKnown RBP6.14□□□□□ -1.43
SNX1-205ENST00000559339 NLRP13Q86W25 1043 aa6.14□□□□□ -1.43
SNX1-205ENST00000559339 CABLES1Q8TDN4 633 aa6.14□□□□□ -1.43
SNX1-205ENST00000559339 POLR3AO14802 1390 aaPredicted RBP6.14□□□□□ -1.43
SNX1-205ENST00000559339 BRD4O60885 1362 aaPredicted RBP6.14□□□□□ -1.43
SNX1-205ENST00000559339 SBNO2Q9Y2G9 1366 aa6.14□□□□□ -1.43
SNX1-205ENST00000559339 RALGAPBQ86X10 1494 aa6.14□□□□□ -1.43
SNX1-205ENST00000559339 TRPM1Q7Z4N2 1603 aa6.14□□□□□ -1.43
SNX1-205ENST00000559339 ST20-MTHFSA0A0A6YYL1 179 aa6.13□□□□□ -1.43
SNX1-205ENST00000559339 TMF1P82094 1093 aa6.13□□□□□ -1.43
SNX1-205ENST00000559339 CDCA8Q53HL2 280 aa6.13□□□□□ -1.43
SNX1-205ENST00000559339 UNC5CLQ8IV45 518 aa6.13□□□□□ -1.43
SNX1-205ENST00000559339 TMC1Q8TDI8 760 aa6.13□□□□□ -1.43
SNX1-205ENST00000559339 PUS7Q96PZ0 661 aaKnown RBP6.13□□□□□ -1.43
SNX1-205ENST00000559339 NUTM2GQ5VZR2 741 aa6.12□□□□□ -1.43
SNX1-205ENST00000559339 HDGFL2Q7Z4V5 671 aaPredicted RBP6.12□□□□□ -1.43
SNX1-205ENST00000559339 GJD4Q96KN9 370 aaPredicted RBP6.12□□□□□ -1.43
SNX1-205ENST00000559339 PRDM11Q9NQV5 511 aa6.12□□□□□ -1.43
SNX1-205ENST00000559339 TERF2IPQ9NYB0 399 aa6.12□□□□□ -1.43
SNX1-205ENST00000559339 CCDC9Q9Y3X0 531 aaKnown RBP6.12□□□□□ -1.43
SNX1-205ENST00000559339 USP32Q8NFA0 1604 aa6.11□□□□□ -1.43
SNX1-205ENST00000559339 COL22A1Q8NFW1 1626 aaPredicted RBP6.11□□□□□ -1.43
SNX1-205ENST00000559339 USP47Q96K76 1375 aa6.11□□□□□ -1.43
SNX1-205ENST00000559339 FAM83GA6ND36 823 aa6.11□□□□□ -1.43
SNX1-205ENST00000559339 NLRP6P59044 892 aa6.11□□□□□ -1.43
SNX1-205ENST00000559339 BTG4Q9NY30 223 aa6.11□□□□□ -1.43
SNX1-205ENST00000559339 QRICH2Q9H0J4 1663 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 USP6P35125 1406 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 KTN1Q86UP2 1357 aaKnown RBP6.1□□□□□ -1.43
SNX1-205ENST00000559339 NINLQ9Y2I6 1382 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 TTC21AQ8NDW8 1320 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 GCP02774 474 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 EVA1CP58658 441 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 ZC3H6P61129 1189 aaKnown RBP6.1□□□□□ -1.43
SNX1-205ENST00000559339 VPS72Q15906 364 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 KCNH5Q8NCM2 988 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 TESK2Q96S53 571 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 RGPD8O14715 1765 aaPredicted RBP6.1□□□□□ -1.43
SNX1-205ENST00000559339 ITSN1Q15811 1721 aa6.1□□□□□ -1.43
SNX1-205ENST00000559339 BCL9LQ86UU0 1499 aa6.09□□□□□ -1.43
SNX1-205ENST00000559339 CDK12Q9NYV4 1490 aaPredicted RBP6.09□□□□□ -1.43
SNX1-205ENST00000559339 A0A0G2JS52 829 aa6.09□□□□□ -1.43
SNX1-205ENST00000559339 EIF4G2P78344 907 aaKnown RBP eCLIP6.09□□□□□ -1.43
SNX1-205ENST00000559339 MYT1Q01538 1121 aa6.09□□□□□ -1.43
SNX1-205ENST00000559339 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.09□□□□□ -1.43
SNX1-205ENST00000559339 SLC12A5Q9H2X9 1139 aa6.09□□□□□ -1.43
SNX1-205ENST00000559339 SLIT2O94813 1529 aa6.09□□□□□ -1.44
SNX1-205ENST00000559339 ATRNO75882 1429 aa6.08□□□□□ -1.44
SNX1-205ENST00000559339 KIAA0232Q92628 1395 aa6.08□□□□□ -1.44
SNX1-205ENST00000559339 USP19O94966 1318 aa6.08□□□□□ -1.44
SNX1-205ENST00000559339 TTC21BQ7Z4L5 1316 aa6.08□□□□□ -1.44
SNX1-205ENST00000559339 CHRNA2Q15822 529 aa6.08□□□□□ -1.44
SNX1-205ENST00000559339 STRN4Q9NRL3 753 aa6.08□□□□□ -1.44
SNX1-205ENST00000559339 CPSF1Q10570 1443 aaKnown RBP6.08□□□□□ -1.44
SNX1-205ENST00000559339 CPDO75976 1380 aa6.07□□□□□ -1.44
SNX1-205ENST00000559339 ZBTB7CA1YPR0 619 aa6.07□□□□□ -1.44
SNX1-205ENST00000559339 SOX12O15370 315 aa6.07□□□□□ -1.44
SNX1-205ENST00000559339 USP35Q9P2H5 1018 aa6.07□□□□□ -1.44
SNX1-205ENST00000559339 TOPAZ1Q8N9V7 1692 aa6.07□□□□□ -1.44
SNX1-205ENST00000559339 TRPM3Q9HCF6 1732 aaPredicted RBP6.06□□□□□ -1.44
SNX1-205ENST00000559339 ONECUT3O60422 494 aaPredicted RBP6.06□□□□□ -1.44
SNX1-205ENST00000559339 FAM98CQ17RN3 349 aaKnown RBP6.06□□□□□ -1.44
SNX1-205ENST00000559339 SEPT12Q8IYM1 358 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 COG3Q96JB2 828 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 POLR3GLQ9BT43 218 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 RGS12O14924 1447 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 EDC4Q6P2E9 1401 aaKnown RBP6.06□□□□□ -1.44
SNX1-205ENST00000559339 SSH2Q76I76 1423 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 A0A1W2PP64 1363 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 ANKRD36BQ8N2N9 1353 aa6.06□□□□□ -1.44
SNX1-205ENST00000559339 SPATA31A5Q5VU36 1347 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 SPATA31A7Q8IWB4 1347 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 ALS2Q96Q42 1657 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 CSB-PGBD3P0DP91 1061 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 SF3B2Q13435 895 aaKnown RBP6.05□□□□□ -1.44
SNX1-205ENST00000559339 TOM1L2Q6ZVM7 507 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 KRT27Q7Z3Y8 459 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 NME9Q86XW9 330 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 CCDC125Q86Z20 511 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 TCP11L2Q8N4U5 519 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 UPF1Q92900 1129 aaKnown RBP eCLIP6.05□□□□□ -1.44
SNX1-205ENST00000559339 THRAP3Q9Y2W1 955 aaKnown RBP6.05□□□□□ -1.44
SNX1-205ENST00000559339 AATKQ6ZMQ8 1374 aa6.05□□□□□ -1.44
SNX1-205ENST00000559339 SPATA31A1Q5TZJ5 1347 aa6.04□□□□□ -1.44
SNX1-205ENST00000559339 COL14A1Q05707 1796 aaKnown RBP6.04□□□□□ -1.44
SNX1-205ENST00000559339 HSPA5P11021 654 aaKnown RBP6.04□□□□□ -1.44
SNX1-205ENST00000559339 PDE3BQ13370 1112 aa6.04□□□□□ -1.44
SNX1-205ENST00000559339 LARP1Q6PKG0 1096 aaKnown RBP6.04□□□□□ -1.44
SNX1-205ENST00000559339 BARGINQ6ZT62 677 aa6.04□□□□□ -1.44
SNX1-205ENST00000559339 ARHGEF25Q86VW2 580 aa6.04□□□□□ -1.44
SNX1-205ENST00000559339 USP31Q70CQ4 1352 aa6.04□□□□□ -1.44
SNX1-205ENST00000559339 CD163L1Q9NR16 1453 aa6.03□□□□□ -1.44
SNX1-205ENST00000559339 NWD2Q9ULI1 1742 aa6.03□□□□□ -1.44
SNX1-205ENST00000559339 MARF1Q9Y4F3 1742 aaKnown RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms