RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 CABP2Q9NPB3 220 aa17.09■□□□□ 0.33
HERC1-202ENST00000558324 ACEP12821 1306 aa17.09■□□□□ 0.33
HERC1-202ENST00000558324 RALGAPBQ86X10 1494 aa17.09■□□□□ 0.33
HERC1-202ENST00000558324 GLI3P10071 1580 aa17.08■□□□□ 0.32
HERC1-202ENST00000558324 CCDC9Q9Y3X0 531 aaKnown RBP17.08■□□□□ 0.32
HERC1-202ENST00000558324 PPIP5K1Q6PFW1 1433 aa17.07■□□□□ 0.32
HERC1-202ENST00000558324 POLR3AO14802 1390 aaPredicted RBP17.07■□□□□ 0.32
HERC1-202ENST00000558324 ATAD2Q6PL18 1390 aa17.07■□□□□ 0.32
HERC1-202ENST00000558324 FAM83GA6ND36 823 aa17.07■□□□□ 0.32
HERC1-202ENST00000558324 NUTM2GQ5VZR2 741 aa17.07■□□□□ 0.32
HERC1-202ENST00000558324 TONSLQ96HA7 1378 aa17.06■□□□□ 0.32
HERC1-202ENST00000558324 NBPF8Q3BBV2 869 aa17.06■□□□□ 0.32
HERC1-202ENST00000558324 CRYBG1Q9Y4K1 1723 aa17.06■□□□□ 0.32
HERC1-202ENST00000558324 NWD2Q9ULI1 1742 aa17.05■□□□□ 0.32
HERC1-202ENST00000558324 PLEKHG3A1L390 1219 aa17.05■□□□□ 0.32
HERC1-202ENST00000558324 VPS72Q15906 364 aa17.04■□□□□ 0.32
HERC1-202ENST00000558324 BTG4Q9NY30 223 aa17.04■□□□□ 0.32
HERC1-202ENST00000558324 COL14A1Q05707 1796 aaKnown RBP17.03■□□□□ 0.32
HERC1-202ENST00000558324 PRDM11Q9NQV5 511 aa17.03■□□□□ 0.32
HERC1-202ENST00000558324 PHRF1Q9P1Y6 1649 aaKnown RBP17.03■□□□□ 0.32
HERC1-202ENST00000558324 EVC2Q86UK5 1308 aa17.02■□□□□ 0.32
HERC1-202ENST00000558324 NRAPQ86VF7 1730 aa17.02■□□□□ 0.32
HERC1-202ENST00000558324 ABTB2Q8N961 1025 aa17.01■□□□□ 0.31
HERC1-202ENST00000558324 CABP1Q9NZU7 370 aa17.01■□□□□ 0.31
HERC1-202ENST00000558324 KIAA0232Q92628 1395 aa17.01■□□□□ 0.31
HERC1-202ENST00000558324 A0A0G2JS52 829 aa17■□□□□ 0.31
HERC1-202ENST00000558324 ZC3H6P61129 1189 aaKnown RBP17■□□□□ 0.31
HERC1-202ENST00000558324 MYT1Q01538 1121 aa17■□□□□ 0.31
HERC1-202ENST00000558324 CHRNA2Q15822 529 aa17■□□□□ 0.31
HERC1-202ENST00000558324 SEPT12Q8IYM1 358 aa17■□□□□ 0.31
HERC1-202ENST00000558324 CARD11Q9BXL7 1154 aa16.99■□□□□ 0.31
HERC1-202ENST00000558324 NRKQ7Z2Y5 1582 aa16.98■□□□□ 0.31
HERC1-202ENST00000558324 USP6P35125 1406 aa16.97■□□□□ 0.31
HERC1-202ENST00000558324 FAM98CQ17RN3 349 aaKnown RBP16.97■□□□□ 0.31
HERC1-202ENST00000558324 STRN4Q9NRL3 753 aa16.96■□□□□ 0.31
HERC1-202ENST00000558324 BRWD3Q6RI45 1802 aa16.96■□□□□ 0.3
HERC1-202ENST00000558324 USP19O94966 1318 aa16.95■□□□□ 0.3
HERC1-202ENST00000558324 NLRP13Q86W25 1043 aa16.94■□□□□ 0.3
HERC1-202ENST00000558324 ZBTB7CA1YPR0 619 aa16.93■□□□□ 0.3
HERC1-202ENST00000558324 SPATA31A5Q5VU36 1347 aa16.93■□□□□ 0.3
HERC1-202ENST00000558324 SPATA31A7Q8IWB4 1347 aa16.93■□□□□ 0.3
HERC1-202ENST00000558324 ONECUT3O60422 494 aaPredicted RBP16.92■□□□□ 0.3
HERC1-202ENST00000558324 NLRP6P59044 892 aa16.92■□□□□ 0.3
HERC1-202ENST00000558324 KRT27Q7Z3Y8 459 aa16.92■□□□□ 0.3
HERC1-202ENST00000558324 EP400Q96L91 3159 aa16.91■□□□□ 0.3
HERC1-202ENST00000558324 BRD4O60885 1362 aaPredicted RBP16.91■□□□□ 0.3
HERC1-202ENST00000558324 GCP02774 474 aa16.91■□□□□ 0.3
HERC1-202ENST00000558324 PIK3C2AO00443 1686 aa16.91■□□□□ 0.3
HERC1-202ENST00000558324 SBNO2Q9Y2G9 1366 aa16.9■□□□□ 0.3
HERC1-202ENST00000558324 SSH2Q76I76 1423 aa16.9■□□□□ 0.3
HERC1-202ENST00000558324 EVA1CP58658 441 aa16.9■□□□□ 0.3
HERC1-202ENST00000558324 USP35Q9P2H5 1018 aa16.9■□□□□ 0.3
HERC1-202ENST00000558324 CPDO75976 1380 aa16.89■□□□□ 0.3
HERC1-202ENST00000558324 BLMP54132 1417 aaPredicted RBP16.89■□□□□ 0.29
HERC1-202ENST00000558324 CAMTA1Q9Y6Y1 1673 aa16.89■□□□□ 0.29
HERC1-202ENST00000558324 CCDC125Q86Z20 511 aa16.89■□□□□ 0.29
HERC1-202ENST00000558324 SPATA31A1Q5TZJ5 1347 aa16.89■□□□□ 0.29
HERC1-202ENST00000558324 LMO7Q8WWI1 1683 aa16.88■□□□□ 0.29
HERC1-202ENST00000558324 AKAP12Q02952 1782 aa16.88■□□□□ 0.29
HERC1-202ENST00000558324 SLIT3O75094 1523 aa16.88■□□□□ 0.29
HERC1-202ENST00000558324 TTC21BQ7Z4L5 1316 aa16.88■□□□□ 0.29
HERC1-202ENST00000558324 KTN1Q86UP2 1357 aaKnown RBP16.88■□□□□ 0.29
HERC1-202ENST00000558324 SOX12O15370 315 aa16.87■□□□□ 0.29
HERC1-202ENST00000558324 FAM182BQ5T319 152 aa16.87■□□□□ 0.29
HERC1-202ENST00000558324 LARP1Q6PKG0 1096 aaKnown RBP16.87■□□□□ 0.29
HERC1-202ENST00000558324 TMC1Q8TDI8 760 aa16.87■□□□□ 0.29
HERC1-202ENST00000558324 ZNF692Q9BU19 519 aaPredicted RBP16.87■□□□□ 0.29
HERC1-202ENST00000558324 THSD7AQ9UPZ6 1657 aa16.87■□□□□ 0.29
HERC1-202ENST00000558324 CPSF1Q10570 1443 aaKnown RBP16.87■□□□□ 0.29
HERC1-202ENST00000558324 SF3B2Q13435 895 aaKnown RBP16.86■□□□□ 0.29
HERC1-202ENST00000558324 PCGF6Q9BYE7 350 aa16.86■□□□□ 0.29
HERC1-202ENST00000558324 DEFB132Q7Z7B7 95 aa16.85■□□□□ 0.29
HERC1-202ENST00000558324 COL5A2P05997 1499 aaPredicted RBP16.85■□□□□ 0.29
HERC1-202ENST00000558324 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.84■□□□□ 0.29
HERC1-202ENST00000558324 TTC21AQ8NDW8 1320 aa16.84■□□□□ 0.29
HERC1-202ENST00000558324 MON2Q7Z3U7 1717 aa16.84■□□□□ 0.29
HERC1-202ENST00000558324 ST20-MTHFSA0A0A6YYL1 179 aa16.83■□□□□ 0.28
HERC1-202ENST00000558324 CD163L1Q9NR16 1453 aa16.82■□□□□ 0.28
HERC1-202ENST00000558324 SLC12A5Q9H2X9 1139 aa16.82■□□□□ 0.28
HERC1-202ENST00000558324 AATKQ6ZMQ8 1374 aa16.81■□□□□ 0.28
HERC1-202ENST00000558324 HDGFL2Q7Z4V5 671 aaPredicted RBP16.81■□□□□ 0.28
HERC1-202ENST00000558324 TCP11L2Q8N4U5 519 aa16.81■□□□□ 0.28
HERC1-202ENST00000558324 TESK2Q96S53 571 aa16.81■□□□□ 0.28
HERC1-202ENST00000558324 ZRANB1Q9UGI0 708 aa16.81■□□□□ 0.28
HERC1-202ENST00000558324 NME9Q86XW9 330 aa16.8■□□□□ 0.28
HERC1-202ENST00000558324 KCNH5Q8NCM2 988 aa16.8■□□□□ 0.28
HERC1-202ENST00000558324 A0A1W2PP64 1363 aa16.79■□□□□ 0.28
HERC1-202ENST00000558324 USP47Q96K76 1375 aa16.79■□□□□ 0.28
HERC1-202ENST00000558324 BARGINQ6ZT62 677 aa16.79■□□□□ 0.28
HERC1-202ENST00000558324 CRB1P82279 1406 aa16.79■□□□□ 0.28
HERC1-202ENST00000558324 ARHGEF25Q86VW2 580 aa16.78■□□□□ 0.28
HERC1-202ENST00000558324 TERF2IPQ9NYB0 399 aa16.78■□□□□ 0.28
HERC1-202ENST00000558324 AXIN2Q9Y2T1 843 aa16.78■□□□□ 0.28
HERC1-202ENST00000558324 NFAT5O94916 1531 aa16.78■□□□□ 0.28
HERC1-202ENST00000558324 COL18A1P39060 1754 aa16.77■□□□□ 0.28
HERC1-202ENST00000558324 BAG6P46379 1132 aa16.77■□□□□ 0.28
HERC1-202ENST00000558324 PDE3BQ13370 1112 aa16.77■□□□□ 0.28
HERC1-202ENST00000558324 TOM1L2Q6ZVM7 507 aa16.77■□□□□ 0.28
HERC1-202ENST00000558324 EDC4Q6P2E9 1401 aaKnown RBP16.77■□□□□ 0.27
HERC1-202ENST00000558324 RGPD1P0DJD0 1748 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms