RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 EZH2Q15910 746 aaKnown RBP14.01□□□□□ -0.17
SYNE2-224ENST00000557024 NRXN1Q9ULB1 1477 aa14□□□□□ -0.17
SYNE2-224ENST00000557024 DISP2A7MBM2 1401 aa13.99□□□□□ -0.17
SYNE2-224ENST00000557024 SAFB2Q14151 953 aaKnown RBP eCLIP13.99□□□□□ -0.17
SYNE2-224ENST00000557024 PMFBP1Q8TBY8 1022 aa13.99□□□□□ -0.17
SYNE2-224ENST00000557024 PIK3C2GO75747 1445 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 ABCA3Q99758 1704 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 ANKRD30BQ9BXX2 1392 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 SPATA31A5Q5VU36 1347 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 SPATA31A7Q8IWB4 1347 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 DSG3P32926 999 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 KNDC1Q76NI1 1749 aa13.98□□□□□ -0.17
SYNE2-224ENST00000557024 TRIM37O94972 964 aa13.97□□□□□ -0.17
SYNE2-224ENST00000557024 NRAPQ86VF7 1730 aa13.97□□□□□ -0.17
SYNE2-224ENST00000557024 SPATA31E1Q6ZUB1 1445 aa13.97□□□□□ -0.17
SYNE2-224ENST00000557024 RGPD1P0DJD0 1748 aa13.96□□□□□ -0.17
SYNE2-224ENST00000557024 SIRT1Q96EB6 747 aa13.96□□□□□ -0.17
SYNE2-224ENST00000557024 CAMKK2Q96RR4 588 aa13.96□□□□□ -0.17
SYNE2-224ENST00000557024 PRAM1Q96QH2 718 aa13.95□□□□□ -0.18
SYNE2-224ENST00000557024 APBA3O96018 575 aa13.94□□□□□ -0.18
SYNE2-224ENST00000557024 IFT172Q9UG01 1749 aa13.94□□□□□ -0.18
SYNE2-224ENST00000557024 TNS1Q9HBL0 1735 aaKnown RBP13.93□□□□□ -0.18
SYNE2-224ENST00000557024 PRDM11Q9NQV5 511 aa13.93□□□□□ -0.18
SYNE2-224ENST00000557024 THSD7AQ9UPZ6 1657 aa13.93□□□□□ -0.18
SYNE2-224ENST00000557024 ADGRB2O60241 1585 aa13.92□□□□□ -0.18
SYNE2-224ENST00000557024 ANKARQ7Z5J8 1434 aa13.92□□□□□ -0.18
SYNE2-224ENST00000557024 RGPD8O14715 1765 aaPredicted RBP13.92□□□□□ -0.18
SYNE2-224ENST00000557024 COL14A1Q05707 1796 aaKnown RBP13.92□□□□□ -0.18
SYNE2-224ENST00000557024 FAM196AQ6ZSG2 479 aa13.92□□□□□ -0.18
SYNE2-224ENST00000557024 C14orf93Q9H972 538 aaKnown RBP13.92□□□□□ -0.18
SYNE2-224ENST00000557024 DHX57Q6P158 1386 aaKnown RBP13.92□□□□□ -0.18
SYNE2-224ENST00000557024 CFAP70Q5T0N1 1121 aa13.91□□□□□ -0.18
SYNE2-224ENST00000557024 POGKQ9P215 609 aa13.91□□□□□ -0.18
SYNE2-224ENST00000557024 GPRASP1Q5JY77 1395 aa13.91□□□□□ -0.18
SYNE2-224ENST00000557024 PARD3Q8TEW0 1356 aa13.91□□□□□ -0.18
SYNE2-224ENST00000557024 SPATA31A1Q5TZJ5 1347 aa13.9□□□□□ -0.18
SYNE2-224ENST00000557024 ACIN1Q9UKV3 1341 aaKnown RBP13.9□□□□□ -0.18
SYNE2-224ENST00000557024 HIRIP3Q9BW71 556 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-224ENST00000557024 ZNF219Q9P2Y4 722 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-224ENST00000557024 PPP1R1BQ9UD71 204 aaPredicted RBP13.9□□□□□ -0.18
SYNE2-224ENST00000557024 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-224ENST00000557024 CHRNA2Q15822 529 aa13.89□□□□□ -0.19
SYNE2-224ENST00000557024 STRN4Q9NRL3 753 aa13.89□□□□□ -0.19
SYNE2-224ENST00000557024 TRPM3Q9HCF6 1732 aaPredicted RBP13.89□□□□□ -0.19
SYNE2-224ENST00000557024 NBPF8Q3BBV2 869 aa13.88□□□□□ -0.19
SYNE2-224ENST00000557024 NBPF14Q5TI25 921 aa13.88□□□□□ -0.19
SYNE2-224ENST00000557024 USP35Q9P2H5 1018 aa13.88□□□□□ -0.19
SYNE2-224ENST00000557024 PRR36Q9H6K5 1346 aa13.88□□□□□ -0.19
SYNE2-224ENST00000557024 KIAA0232Q92628 1395 aa13.87□□□□□ -0.19
SYNE2-224ENST00000557024 SPON1Q9HCB6 807 aa13.87□□□□□ -0.19
SYNE2-224ENST00000557024 ALS2Q96Q42 1657 aa13.87□□□□□ -0.19
SYNE2-224ENST00000557024 PDE3BQ13370 1112 aa13.86□□□□□ -0.19
SYNE2-224ENST00000557024 NGDNQ8NEJ9 315 aaKnown RBP13.86□□□□□ -0.19
SYNE2-224ENST00000557024 MPHOSPH9Q99550 1183 aa13.86□□□□□ -0.19
SYNE2-224ENST00000557024 MINK1Q8N4C8 1332 aaPredicted RBP13.86□□□□□ -0.19
SYNE2-224ENST00000557024 KCNQ2O43526 872 aa13.85□□□□□ -0.19
SYNE2-224ENST00000557024 NINLQ9Y2I6 1382 aa13.84□□□□□ -0.19
SYNE2-224ENST00000557024 ZC3H6P61129 1189 aaKnown RBP13.84□□□□□ -0.19
SYNE2-224ENST00000557024 TRAK1Q9UPV9 953 aa13.84□□□□□ -0.19
SYNE2-224ENST00000557024 DLC1Q96QB1 1528 aa13.84□□□□□ -0.19
SYNE2-224ENST00000557024 EIF3AQ14152 1382 aaKnown RBP13.83□□□□□ -0.19
SYNE2-224ENST00000557024 NUTM2GQ5VZR2 741 aa13.83□□□□□ -0.2
SYNE2-224ENST00000557024 RREB1Q92766 1687 aa13.82□□□□□ -0.2
SYNE2-224ENST00000557024 NUP188Q5SRE5 1749 aa13.82□□□□□ -0.2
SYNE2-224ENST00000557024 TULP4Q9NRJ4 1543 aa13.82□□□□□ -0.2
SYNE2-224ENST00000557024 WASLO00401 505 aaPredicted RBP13.82□□□□□ -0.2
SYNE2-224ENST00000557024 EVA1CP58658 441 aa13.82□□□□□ -0.2
SYNE2-224ENST00000557024 BARGINQ6ZT62 677 aa13.82□□□□□ -0.2
SYNE2-224ENST00000557024 CRYBG1Q9Y4K1 1723 aa13.81□□□□□ -0.2
SYNE2-224ENST00000557024 SSH2Q76I76 1423 aa13.81□□□□□ -0.2
SYNE2-224ENST00000557024 LARP1Q6PKG0 1096 aaKnown RBP13.8□□□□□ -0.2
SYNE2-224ENST00000557024 TCP11L2Q8N4U5 519 aa13.79□□□□□ -0.2
SYNE2-224ENST00000557024 ADGRB1O14514 1584 aa13.79□□□□□ -0.2
SYNE2-224ENST00000557024 ABCB7O75027 752 aa13.78□□□□□ -0.2
SYNE2-224ENST00000557024 ZNF784Q8NCA9 323 aaPredicted RBP13.77□□□□□ -0.21
SYNE2-224ENST00000557024 ANO8Q9HCE9 1232 aaPredicted RBP13.77□□□□□ -0.21
SYNE2-224ENST00000557024 CAMTA1Q9Y6Y1 1673 aa13.77□□□□□ -0.21
SYNE2-224ENST00000557024 ATP7BP35670 1465 aa13.76□□□□□ -0.21
SYNE2-224ENST00000557024 NUDT16Q96DE0 195 aaKnown RBP13.76□□□□□ -0.21
SYNE2-224ENST00000557024 PDGFDQ9GZP0 370 aaPredicted RBP13.76□□□□□ -0.21
SYNE2-224ENST00000557024 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
SYNE2-224ENST00000557024 SENP3-EIF4A1A0A087X0R7 540 aa13.75□□□□□ -0.21
SYNE2-224ENST00000557024 ZBTB7AO95365 584 aa13.74□□□□□ -0.21
SYNE2-224ENST00000557024 THRAP3Q9Y2W1 955 aaKnown RBP13.74□□□□□ -0.21
SYNE2-224ENST00000557024 NRKQ7Z2Y5 1582 aa13.74□□□□□ -0.21
SYNE2-224ENST00000557024 KDM2AQ9Y2K7 1162 aa13.73□□□□□ -0.21
SYNE2-224ENST00000557024 OVOS2A0A0G2JMS6 1433 aa13.73□□□□□ -0.21
SYNE2-224ENST00000557024 OVOS2A0A0J9YW53 1432 aa13.73□□□□□ -0.21
SYNE2-224ENST00000557024 OVOS2Q6IE36 1432 aa13.73□□□□□ -0.21
SYNE2-224ENST00000557024 CPDO75976 1380 aa13.72□□□□□ -0.21
SYNE2-224ENST00000557024 ACEP12821 1306 aa13.72□□□□□ -0.21
SYNE2-224ENST00000557024 C11orf95C9JLR9 678 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-224ENST00000557024 PTF1AQ7RTS3 328 aa13.72□□□□□ -0.21
SYNE2-224ENST00000557024 ABTB2Q8N961 1025 aa13.72□□□□□ -0.21
SYNE2-224ENST00000557024 BCL11BQ9C0K0 894 aaPredicted RBP13.72□□□□□ -0.21
SYNE2-224ENST00000557024 PLSCR1O15162 318 aa13.71□□□□□ -0.21
SYNE2-224ENST00000557024 PTGER2P43116 358 aa13.71□□□□□ -0.21
SYNE2-224ENST00000557024 POLR3AO14802 1390 aaPredicted RBP13.71□□□□□ -0.22
SYNE2-224ENST00000557024 USP19O94966 1318 aa13.7□□□□□ -0.22
SYNE2-224ENST00000557024 LMO7Q8WWI1 1683 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms