RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 COL14A1Q05707 1796 aaKnown RBP14.82□□□□□ -0.04
SHMT2-224ENST00000556737 RBM6P78332 1123 aaKnown RBP14.81□□□□□ -0.04
SHMT2-224ENST00000556737 NGDNQ8NEJ9 315 aaKnown RBP14.81□□□□□ -0.04
SHMT2-224ENST00000556737 AKAP12Q02952 1782 aa14.8□□□□□ -0.04
SHMT2-224ENST00000556737 PLEKHG3A1L390 1219 aa14.8□□□□□ -0.04
SHMT2-224ENST00000556737 TRPC5Q9UL62 973 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-224ENST00000556737 CCDC61Q9Y6R9 512 aa14.8□□□□□ -0.04
SHMT2-224ENST00000556737 ACEP12821 1306 aa14.8□□□□□ -0.04
SHMT2-224ENST00000556737 SBNO2Q9Y2G9 1366 aa14.8□□□□□ -0.04
SHMT2-224ENST00000556737 LMOD2Q6P5Q4 547 aa14.79□□□□□ -0.04
SHMT2-224ENST00000556737 CABP2Q9NPB3 220 aa14.79□□□□□ -0.04
SHMT2-224ENST00000556737 SRPK2P78362 688 aaKnown RBP14.78□□□□□ -0.04
SHMT2-224ENST00000556737 PIK3C2AO00443 1686 aa14.77□□□□□ -0.04
SHMT2-224ENST00000556737 USP6P35125 1406 aa14.76□□□□□ -0.05
SHMT2-224ENST00000556737 MON2Q7Z3U7 1717 aa14.76□□□□□ -0.05
SHMT2-224ENST00000556737 PLEKHG5O94827 1062 aa14.76□□□□□ -0.05
SHMT2-224ENST00000556737 HAP1P54257 671 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-224ENST00000556737 UNC5CLQ8IV45 518 aa14.76□□□□□ -0.05
SHMT2-224ENST00000556737 SSH2Q76I76 1423 aa14.75□□□□□ -0.05
SHMT2-224ENST00000556737 LMO7Q8WWI1 1683 aa14.75□□□□□ -0.05
SHMT2-224ENST00000556737 EVC2Q86UK5 1308 aa14.75□□□□□ -0.05
SHMT2-224ENST00000556737 PAK3O75914 559 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-224ENST00000556737 BRWD3Q6RI45 1802 aa14.74□□□□□ -0.05
SHMT2-224ENST00000556737 CARD11Q9BXL7 1154 aa14.74□□□□□ -0.05
SHMT2-224ENST00000556737 SLIT3O75094 1523 aa14.74□□□□□ -0.05
SHMT2-224ENST00000556737 BRD4O60885 1362 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-224ENST00000556737 USP19O94966 1318 aa14.73□□□□□ -0.05
SHMT2-224ENST00000556737 FAM83GA6ND36 823 aa14.73□□□□□ -0.05
SHMT2-224ENST00000556737 UPF1Q92900 1129 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHMT2-224ENST00000556737 GJD4Q96KN9 370 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-224ENST00000556737 EP400Q96L91 3159 aa14.73□□□□□ -0.05
SHMT2-224ENST00000556737 CD163L1Q9NR16 1453 aa14.72□□□□□ -0.05
SHMT2-224ENST00000556737 CABP1Q9NZU7 370 aa14.72□□□□□ -0.05
SHMT2-224ENST00000556737 CPSF1Q10570 1443 aaKnown RBP14.72□□□□□ -0.05
SHMT2-224ENST00000556737 ATAD2Q6PL18 1390 aa14.72□□□□□ -0.05
SHMT2-224ENST00000556737 USP54Q70EL1 1684 aa14.71□□□□□ -0.05
SHMT2-224ENST00000556737 VPS72Q15906 364 aa14.71□□□□□ -0.05
SHMT2-224ENST00000556737 KIAA0232Q92628 1395 aa14.71□□□□□ -0.06
SHMT2-224ENST00000556737 THSD7AQ9UPZ6 1657 aa14.71□□□□□ -0.06
SHMT2-224ENST00000556737 NUTM2GQ5VZR2 741 aa14.7□□□□□ -0.06
SHMT2-224ENST00000556737 CPDO75976 1380 aa14.69□□□□□ -0.06
SHMT2-224ENST00000556737 CLSPNQ9HAW4 1339 aa14.68□□□□□ -0.06
SHMT2-224ENST00000556737 BTG4Q9NY30 223 aa14.68□□□□□ -0.06
SHMT2-224ENST00000556737 CAMTA1Q9Y6Y1 1673 aa14.68□□□□□ -0.06
SHMT2-224ENST00000556737 ABTB2Q8N961 1025 aa14.67□□□□□ -0.06
SHMT2-224ENST00000556737 TESK2Q96S53 571 aa14.67□□□□□ -0.06
SHMT2-224ENST00000556737 PRDM11Q9NQV5 511 aa14.67□□□□□ -0.06
SHMT2-224ENST00000556737 COL18A1P39060 1754 aa14.67□□□□□ -0.06
SHMT2-224ENST00000556737 NFAT5O94916 1531 aa14.66□□□□□ -0.06
SHMT2-224ENST00000556737 CHRNA2Q15822 529 aa14.65□□□□□ -0.06
SHMT2-224ENST00000556737 USP47Q96K76 1375 aa14.64□□□□□ -0.07
SHMT2-224ENST00000556737 ONECUT3O60422 494 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-224ENST00000556737 ZC3H6P61129 1189 aaKnown RBP14.64□□□□□ -0.07
SHMT2-224ENST00000556737 SPATA31A5Q5VU36 1347 aa14.64□□□□□ -0.07
SHMT2-224ENST00000556737 TTC21BQ7Z4L5 1316 aa14.64□□□□□ -0.07
SHMT2-224ENST00000556737 SPATA31A7Q8IWB4 1347 aa14.64□□□□□ -0.07
SHMT2-224ENST00000556737 COL5A2P05997 1499 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-224ENST00000556737 KTN1Q86UP2 1357 aaKnown RBP14.63□□□□□ -0.07
SHMT2-224ENST00000556737 NLRP13Q86W25 1043 aa14.63□□□□□ -0.07
SHMT2-224ENST00000556737 A0A1W2PP64 1363 aa14.62□□□□□ -0.07
SHMT2-224ENST00000556737 MYOM1P52179 1685 aa14.62□□□□□ -0.07
SHMT2-224ENST00000556737 WNK3Q9BYP7 1800 aa14.62□□□□□ -0.07
SHMT2-224ENST00000556737 ST20-MTHFSA0A0A6YYL1 179 aa14.62□□□□□ -0.07
SHMT2-224ENST00000556737 GCP02774 474 aa14.62□□□□□ -0.07
SHMT2-224ENST00000556737 TTC21AQ8NDW8 1320 aa14.62□□□□□ -0.07
SHMT2-224ENST00000556737 SEPT12Q8IYM1 358 aa14.61□□□□□ -0.07
SHMT2-224ENST00000556737 PUS7Q96PZ0 661 aaKnown RBP14.61□□□□□ -0.07
SHMT2-224ENST00000556737 ZNF692Q9BU19 519 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-224ENST00000556737 TIMELESSQ9UNS1 1208 aa14.61□□□□□ -0.07
SHMT2-224ENST00000556737 CCDC9Q9Y3X0 531 aaKnown RBP14.61□□□□□ -0.07
SHMT2-224ENST00000556737 ABCC6O95255 1503 aa14.61□□□□□ -0.07
SHMT2-224ENST00000556737 EDC4Q6P2E9 1401 aaKnown RBP14.6□□□□□ -0.07
SHMT2-224ENST00000556737 NLRP6P59044 892 aa14.6□□□□□ -0.07
SHMT2-224ENST00000556737 FAM98CQ17RN3 349 aaKnown RBP14.6□□□□□ -0.07
SHMT2-224ENST00000556737 SPATA31A1Q5TZJ5 1347 aa14.6□□□□□ -0.07
SHMT2-224ENST00000556737 RGPD5Q99666 1765 aa14.6□□□□□ -0.07
SHMT2-224ENST00000556737 USP31Q70CQ4 1352 aa14.6□□□□□ -0.07
SHMT2-224ENST00000556737 NINLQ9Y2I6 1382 aa14.6□□□□□ -0.07
SHMT2-224ENST00000556737 PARP4Q9UKK3 1724 aaKnown RBP14.59□□□□□ -0.07
SHMT2-224ENST00000556737 AATKQ6ZMQ8 1374 aa14.59□□□□□ -0.07
SHMT2-224ENST00000556737 OVOS2A0A0J9YW53 1432 aa14.58□□□□□ -0.07
SHMT2-224ENST00000556737 OVOS2Q6IE36 1432 aa14.58□□□□□ -0.07
SHMT2-224ENST00000556737 LTN1O94822 1766 aa14.58□□□□□ -0.08
SHMT2-224ENST00000556737 SLC12A5Q9H2X9 1139 aa14.58□□□□□ -0.08
SHMT2-224ENST00000556737 TNS1Q9HBL0 1735 aaKnown RBP14.58□□□□□ -0.08
SHMT2-224ENST00000556737 LRRC37A3O60309 1634 aa14.57□□□□□ -0.08
SHMT2-224ENST00000556737 STRN4Q9NRL3 753 aa14.57□□□□□ -0.08
SHMT2-224ENST00000556737 BLMP54132 1417 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-224ENST00000556737 RGPD1P0DJD0 1748 aa14.56□□□□□ -0.08
SHMT2-224ENST00000556737 KRT27Q7Z3Y8 459 aa14.56□□□□□ -0.08
SHMT2-224ENST00000556737 ZRANB1Q9UGI0 708 aa14.56□□□□□ -0.08
SHMT2-224ENST00000556737 CRB1P82279 1406 aa14.56□□□□□ -0.08
SHMT2-224ENST00000556737 LARP1Q6PKG0 1096 aaKnown RBP14.55□□□□□ -0.08
SHMT2-224ENST00000556737 NME9Q86XW9 330 aa14.55□□□□□ -0.08
SHMT2-224ENST00000556737 TMC1Q8TDI8 760 aa14.55□□□□□ -0.08
SHMT2-224ENST00000556737 HDGFL2Q7Z4V5 671 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-224ENST00000556737 ARHGEF25Q86VW2 580 aa14.54□□□□□ -0.08
SHMT2-224ENST00000556737 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.54□□□□□ -0.08
SHMT2-224ENST00000556737 ANKRD36BQ8N2N9 1353 aa14.54□□□□□ -0.08
SHMT2-224ENST00000556737 KIF20BQ96Q89 1820 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms