RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 SBNO2Q9Y2G9 1366 aa29.16■■■□□ 2.26
VTI1B-205ENST00000555543 RXRBP28702 533 aa29.16■■■□□ 2.26
VTI1B-205ENST00000555543 HAP1P54257 671 aaPredicted RBP29.15■■■□□ 2.26
VTI1B-205ENST00000555543 SLIT2O94813 1529 aa29.14■■■□□ 2.25
VTI1B-205ENST00000555543 ATRNO75882 1429 aa29.13■■■□□ 2.25
VTI1B-205ENST00000555543 CDK12Q9NYV4 1490 aaPredicted RBP29.12■■■□□ 2.25
VTI1B-205ENST00000555543 CABP1Q9NZU7 370 aa29.12■■■□□ 2.25
VTI1B-205ENST00000555543 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.11■■■□□ 2.25
VTI1B-205ENST00000555543 PLCH1Q4KWH8 1693 aa29.1■■■□□ 2.25
VTI1B-205ENST00000555543 RBM6P78332 1123 aaKnown RBP29.09■■■□□ 2.25
VTI1B-205ENST00000555543 TRPC5Q9UL62 973 aaPredicted RBP29.09■■■□□ 2.25
VTI1B-205ENST00000555543 RGS12O14924 1447 aa29.09■■■□□ 2.25
VTI1B-205ENST00000555543 PHRF1Q9P1Y6 1649 aaKnown RBP29.07■■■□□ 2.24
VTI1B-205ENST00000555543 USP6P35125 1406 aa29.06■■■□□ 2.24
VTI1B-205ENST00000555543 NUTM2GQ5VZR2 741 aa29.06■■■□□ 2.24
VTI1B-205ENST00000555543 ATAD2Q6PL18 1390 aa29.05■■■□□ 2.24
VTI1B-205ENST00000555543 NWD2Q9ULI1 1742 aa29.04■■■□□ 2.24
VTI1B-205ENST00000555543 TIMELESSQ9UNS1 1208 aa29.04■■■□□ 2.24
VTI1B-205ENST00000555543 FAM83GA6ND36 823 aa29.03■■■□□ 2.24
VTI1B-205ENST00000555543 UNC5CLQ8IV45 518 aa29.03■■■□□ 2.24
VTI1B-205ENST00000555543 CCER1Q8TC90 406 aaPredicted RBP29.03■■■□□ 2.24
VTI1B-205ENST00000555543 AKAP12Q02952 1782 aa29.01■■■□□ 2.23
VTI1B-205ENST00000555543 ST20-MTHFSA0A0A6YYL1 179 aa29.01■■■□□ 2.23
VTI1B-205ENST00000555543 TESK2Q96S53 571 aa29.01■■■□□ 2.23
VTI1B-205ENST00000555543 SSH2Q76I76 1423 aa29.01■■■□□ 2.23
VTI1B-205ENST00000555543 COL14A1Q05707 1796 aaKnown RBP29.01■■■□□ 2.23
VTI1B-205ENST00000555543 BRD4O60885 1362 aaPredicted RBP29.01■■■□□ 2.23
VTI1B-205ENST00000555543 ABTB2Q8N961 1025 aa29■■■□□ 2.23
VTI1B-205ENST00000555543 GLI3P10071 1580 aa29■■■□□ 2.23
VTI1B-205ENST00000555543 NRKQ7Z2Y5 1582 aa29■■■□□ 2.23
VTI1B-205ENST00000555543 NRAPQ86VF7 1730 aa28.99■■■□□ 2.23
VTI1B-205ENST00000555543 CPSF1Q10570 1443 aaKnown RBP28.98■■■□□ 2.23
VTI1B-205ENST00000555543 USP47Q96K76 1375 aa28.98■■■□□ 2.23
VTI1B-205ENST00000555543 USP19O94966 1318 aa28.97■■■□□ 2.23
VTI1B-205ENST00000555543 GJD4Q96KN9 370 aaPredicted RBP28.97■■■□□ 2.23
VTI1B-205ENST00000555543 PIK3C2AO00443 1686 aa28.96■■■□□ 2.23
VTI1B-205ENST00000555543 KIAA0232Q92628 1395 aa28.96■■■□□ 2.23
VTI1B-205ENST00000555543 CD163L1Q9NR16 1453 aa28.94■■■□□ 2.22
VTI1B-205ENST00000555543 PRDM11Q9NQV5 511 aa28.93■■■□□ 2.22
VTI1B-205ENST00000555543 BTG4Q9NY30 223 aa28.93■■■□□ 2.22
VTI1B-205ENST00000555543 MON2Q7Z3U7 1717 aa28.93■■■□□ 2.22
VTI1B-205ENST00000555543 ZC3H6P61129 1189 aaKnown RBP28.92■■■□□ 2.22
VTI1B-205ENST00000555543 VPS72Q15906 364 aa28.92■■■□□ 2.22
VTI1B-205ENST00000555543 NLRP13Q86W25 1043 aa28.91■■■□□ 2.22
VTI1B-205ENST00000555543 ZNF692Q9BU19 519 aaPredicted RBP28.91■■■□□ 2.22
VTI1B-205ENST00000555543 TTC21BQ7Z4L5 1316 aa28.91■■■□□ 2.22
VTI1B-205ENST00000555543 KTN1Q86UP2 1357 aaKnown RBP28.9■■■□□ 2.22
VTI1B-205ENST00000555543 CHRNA2Q15822 529 aa28.9■■■□□ 2.22
VTI1B-205ENST00000555543 SLIT3O75094 1523 aa28.89■■■□□ 2.22
VTI1B-205ENST00000555543 NLRP6P59044 892 aa28.88■■■□□ 2.21
VTI1B-205ENST00000555543 TMC1Q8TDI8 760 aa28.88■■■□□ 2.21
VTI1B-205ENST00000555543 PUS7Q96PZ0 661 aaKnown RBP28.88■■■□□ 2.21
VTI1B-205ENST00000555543 SLC12A5Q9H2X9 1139 aa28.88■■■□□ 2.21
VTI1B-205ENST00000555543 GCP02774 474 aa28.86■■■□□ 2.21
VTI1B-205ENST00000555543 CPDO75976 1380 aa28.86■■■□□ 2.21
VTI1B-205ENST00000555543 UPF1Q92900 1129 aaKnown RBP eCLIP28.85■■■□□ 2.21
VTI1B-205ENST00000555543 CCDC9Q9Y3X0 531 aaKnown RBP28.85■■■□□ 2.21
VTI1B-205ENST00000555543 LMO7Q8WWI1 1683 aa28.85■■■□□ 2.21
VTI1B-205ENST00000555543 TTC21AQ8NDW8 1320 aa28.84■■■□□ 2.21
VTI1B-205ENST00000555543 A0A1W2PP64 1363 aa28.83■■■□□ 2.21
VTI1B-205ENST00000555543 CAMTA1Q9Y6Y1 1673 aa28.81■■■□□ 2.2
VTI1B-205ENST00000555543 EP400Q96L91 3159 aa28.81■■■□□ 2.2
VTI1B-205ENST00000555543 SLC24A1O60721 1099 aa28.8■■■□□ 2.2
VTI1B-205ENST00000555543 HDGFL2Q7Z4V5 671 aaPredicted RBP28.8■■■□□ 2.2
VTI1B-205ENST00000555543 TMF1P82094 1093 aa28.79■■■□□ 2.2
VTI1B-205ENST00000555543 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.79■■■□□ 2.2
VTI1B-205ENST00000555543 EDC4Q6P2E9 1401 aaKnown RBP28.78■■■□□ 2.2
VTI1B-205ENST00000555543 BRWD3Q6RI45 1802 aa28.78■■■□□ 2.2
VTI1B-205ENST00000555543 NINLQ9Y2I6 1382 aa28.78■■■□□ 2.2
VTI1B-205ENST00000555543 SPATA31A5Q5VU36 1347 aa28.78■■■□□ 2.2
VTI1B-205ENST00000555543 SPATA31A7Q8IWB4 1347 aa28.78■■■□□ 2.2
VTI1B-205ENST00000555543 SEPT12Q8IYM1 358 aa28.77■■■□□ 2.2
VTI1B-205ENST00000555543 STRN4Q9NRL3 753 aa28.77■■■□□ 2.2
VTI1B-205ENST00000555543 TERF2IPQ9NYB0 399 aa28.77■■■□□ 2.2
VTI1B-205ENST00000555543 ZRANB1Q9UGI0 708 aa28.77■■■□□ 2.2
VTI1B-205ENST00000555543 USP54Q70EL1 1684 aa28.77■■■□□ 2.2
VTI1B-205ENST00000555543 ONECUT3O60422 494 aaPredicted RBP28.76■■■□□ 2.19
VTI1B-205ENST00000555543 NME9Q86XW9 330 aa28.76■■■□□ 2.19
VTI1B-205ENST00000555543 NFAT5O94916 1531 aa28.75■■■□□ 2.19
VTI1B-205ENST00000555543 FAM98CQ17RN3 349 aaKnown RBP28.74■■■□□ 2.19
VTI1B-205ENST00000555543 USP31Q70CQ4 1352 aa28.74■■■□□ 2.19
VTI1B-205ENST00000555543 ZBTB7CA1YPR0 619 aa28.73■■■□□ 2.19
VTI1B-205ENST00000555543 COL18A1P39060 1754 aa28.73■■■□□ 2.19
VTI1B-205ENST00000555543 COL5A2P05997 1499 aaPredicted RBP28.72■■■□□ 2.19
VTI1B-205ENST00000555543 SOX12O15370 315 aa28.72■■■□□ 2.19
VTI1B-205ENST00000555543 SPATA31A1Q5TZJ5 1347 aa28.71■■■□□ 2.19
VTI1B-205ENST00000555543 THSD7AQ9UPZ6 1657 aa28.71■■■□□ 2.19
VTI1B-205ENST00000555543 AATKQ6ZMQ8 1374 aa28.71■■■□□ 2.19
VTI1B-205ENST00000555543 ANKRD36BQ8N2N9 1353 aa28.7■■■□□ 2.18
VTI1B-205ENST00000555543 MYOM1P52179 1685 aa28.7■■■□□ 2.18
VTI1B-205ENST00000555543 LARP1Q6PKG0 1096 aaKnown RBP28.69■■■□□ 2.18
VTI1B-205ENST00000555543 KCNH5Q8NCM2 988 aa28.69■■■□□ 2.18
VTI1B-205ENST00000555543 A0A0G2JS52 829 aa28.68■■■□□ 2.18
VTI1B-205ENST00000555543 EVA1CP58658 441 aa28.68■■■□□ 2.18
VTI1B-205ENST00000555543 MYT1Q01538 1121 aa28.68■■■□□ 2.18
VTI1B-205ENST00000555543 ARHGEF25Q86VW2 580 aa28.68■■■□□ 2.18
VTI1B-205ENST00000555543 OVOS2A0A0J9YW53 1432 aa28.68■■■□□ 2.18
VTI1B-205ENST00000555543 OVOS2Q6IE36 1432 aa28.68■■■□□ 2.18
VTI1B-205ENST00000555543 CDCA8Q53HL2 280 aa28.65■■■□□ 2.18
VTI1B-205ENST00000555543 USP35Q9P2H5 1018 aa28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 166.5 ms