RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 SPC24Q8NBT2 197 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 PPFIBP1Q86W92 1011 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 RIPK4P57078 832 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 MPHOSPH9Q99550 1183 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 CNNM1Q9NRU3 951 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 PHLDB1Q86UU1 1377 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 WDR78Q5VTH9 848 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 NUP133Q8WUM0 1156 aa8.19□□□□□ -1.1
SYNE2-216ENST00000555002 STK38Q15208 465 aa8.18□□□□□ -1.1
SYNE2-216ENST00000555002 CCDC39Q9UFE4 941 aa8.18□□□□□ -1.1
SYNE2-216ENST00000555002 TRIM21P19474 475 aaKnown RBP8.18□□□□□ -1.1
SYNE2-216ENST00000555002 NLRP13Q86W25 1043 aa8.18□□□□□ -1.1
SYNE2-216ENST00000555002 UBTFL1P0CB47 393 aaPredicted RBP8.18□□□□□ -1.1
SYNE2-216ENST00000555002 INTS3Q68E01 1043 aaKnown RBP8.18□□□□□ -1.1
SYNE2-216ENST00000555002 GOLGA6L7A0A1B0GV03 622 aa8.18□□□□□ -1.1
SYNE2-216ENST00000555002 MAPK8IP2Q13387 824 aaPredicted RBP8.18□□□□□ -1.1
SYNE2-216ENST00000555002 CCDC91Q7Z6B0 441 aa8.18□□□□□ -1.1
SYNE2-216ENST00000555002 MYO15BQ96JP2 1530 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 CNTROBQ8N137 903 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 E9PSI1 815 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 ERC1Q8IUD2 1116 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 FAM177A1Q8N128 213 aaPredicted RBP8.17□□□□□ -1.1
SYNE2-216ENST00000555002 NASPP49321 788 aaPredicted RBP8.17□□□□□ -1.1
SYNE2-216ENST00000555002 ZSCAN29Q8IWY8 852 aaPredicted RBP8.17□□□□□ -1.1
SYNE2-216ENST00000555002 DYDC1Q8WWB3 177 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 BCCIPQ9P287 314 aaKnown RBP eCLIP8.17□□□□□ -1.1
SYNE2-216ENST00000555002 LRRFIP2Q9Y608 721 aaKnown RBP8.17□□□□□ -1.1
SYNE2-216ENST00000555002 CARMIL1Q5VZK9 1371 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 GOLGA6L10A0A0M3HER8 536 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 PIP4K2BP78356 416 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 STK3Q13188 491 aa8.17□□□□□ -1.1
SYNE2-216ENST00000555002 CCP110O43303 1012 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 LNPKQ9C0E8 428 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 MPNDQ8N594 471 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 ZNF396Q96N95 335 aaPredicted RBP8.16□□□□□ -1.1
SYNE2-216ENST00000555002 PSMA5P28066 241 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.16□□□□□ -1.1
SYNE2-216ENST00000555002 FAM43AQ8N2R8 423 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 API5Q9BZZ5 524 aaKnown RBP8.16□□□□□ -1.1
SYNE2-216ENST00000555002 LUC7LQ9NQ29 371 aaKnown RBP8.16□□□□□ -1.1
SYNE2-216ENST00000555002 EXOC6Q8TAG9 804 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 SERPINC1P01008 464 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 SOGA3Q5TF21 947 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 DIAPH1O60610 1272 aaKnown RBP8.16□□□□□ -1.1
SYNE2-216ENST00000555002 EPB41L2O43491 1005 aaKnown RBP8.16□□□□□ -1.1
SYNE2-216ENST00000555002 USP5P45974 858 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 SLC26A8Q96RN1 970 aa8.16□□□□□ -1.1
SYNE2-216ENST00000555002 FIBPO43427 364 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 CCDC69A6NI79 296 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 PDE4AP27815 886 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 DZIP1LQ8IYY4 767 aaKnown RBP8.15□□□□□ -1.1
SYNE2-216ENST00000555002 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.15□□□□□ -1.1
SYNE2-216ENST00000555002 DDX19BQ9UMR2 479 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 TSPY26PQ9H489 355 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 GSE1Q14687 1217 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 GIMAP7Q8NHV1 300 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 DRC1Q96MC2 740 aa8.15□□□□□ -1.1
SYNE2-216ENST00000555002 CTNNBL1Q8WYA6 563 aaPredicted RBP8.15□□□□□ -1.11
SYNE2-216ENST00000555002 HOMER2Q9NSB8 354 aa8.15□□□□□ -1.11
SYNE2-216ENST00000555002 UACAQ9BZF9 1416 aa8.15□□□□□ -1.11
SYNE2-216ENST00000555002 POTEJP0CG39 1038 aa8.15□□□□□ -1.11
SYNE2-216ENST00000555002 RABEP1Q15276 862 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 BICDL1Q6ZP65 573 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC113Q9H0I3 377 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 MRPS9P82933 396 aaKnown RBP8.14□□□□□ -1.11
SYNE2-216ENST00000555002 PDE3BQ13370 1112 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 KIAA1328Q86T90 577 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 STAMBPO95630 424 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 MAP4K4O95819 1239 aaPredicted RBP8.14□□□□□ -1.11
SYNE2-216ENST00000555002 SIL1Q9H173 461 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 MYBBP1AQ9BQG0 1328 aaKnown RBP8.14□□□□□ -1.11
SYNE2-216ENST00000555002 TNNT1P13805 278 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 LIG1P18858 919 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 PIP4K2AP48426 406 aaPredicted RBP8.14□□□□□ -1.11
SYNE2-216ENST00000555002 CAVIN1Q6NZI2 390 aaKnown RBP8.14□□□□□ -1.11
SYNE2-216ENST00000555002 SERPINA10Q9UK55 444 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 NUCB2P80303 420 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 DNAI2Q9GZS0 605 aa8.14□□□□□ -1.11
SYNE2-216ENST00000555002 UBE4AQ14139 1066 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 JAKMIP3Q5VZ66 844 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 DDX23Q9BUQ8 820 aaKnown RBP8.13□□□□□ -1.11
SYNE2-216ENST00000555002 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.13□□□□□ -1.11
SYNE2-216ENST00000555002 MACROD2A1Z1Q3 448 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 UBA5Q9GZZ9 404 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC144AA2RUR9 1427 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 TRIM22Q8IYM9 498 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 TAF4BQ92750 862 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 RRP1P56182 461 aaKnown RBP8.13□□□□□ -1.11
SYNE2-216ENST00000555002 PPP4R3AQ6IN85 833 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 ME1P48163 572 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 CDC45O75419 566 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 MPHOSPH8Q99549 860 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 GOPCQ9HD26 462 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 KIF7Q2M1P5 1343 aa8.13□□□□□ -1.11
SYNE2-216ENST00000555002 TXLNBQ8N3L3 684 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 C22orf23Q9BZE7 217 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 TMOD2Q9NZR1 351 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 TDO2P48775 406 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 NFKBIBQ15653 356 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 TNIKQ9UKE5 1360 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms