RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 Q3C1V9 767 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 DXOO77932 396 aaKnown RBP3.52□□□□□ -1.85
PRPF39-208ENST00000554785 FDX1P10109 184 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 PDE4DQ08499 809 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 TRIM47Q96LD4 638 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 PCDHB15Q9Y5E8 787 aa3.52□□□□□ -1.85
PRPF39-208ENST00000554785 PTCRAQ6ISU1 281 aaPredicted RBP3.51□□□□□ -1.85
PRPF39-208ENST00000554785 TBC1D2Q9BYX2 928 aa3.51□□□□□ -1.85
PRPF39-208ENST00000554785 C6orf229H3BNL8 230 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 RNF225M0QZC1 329 aaPredicted RBP3.5□□□□□ -1.85
PRPF39-208ENST00000554785 RETREG3Q86VR2 466 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 CCDC24Q8N4L8 307 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 KRTAP4-5Q9BYR2 181 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 ATP13A2Q9NQ11 1180 aa3.5□□□□□ -1.85
PRPF39-208ENST00000554785 SKOR1P84550 965 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 TRIM32Q13049 653 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 RSBN1LQ6PCB5 846 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-208ENST00000554785 GPBP1L1Q9HC44 474 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-208ENST00000554785 DNMT3AQ9Y6K1 912 aaPredicted RBP3.49□□□□□ -1.85
PRPF39-208ENST00000554785 RBAK-RBAKDNI3L0D1 243 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 JUNDP17535 347 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 IRF7Q92985 503 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 LIMD1Q9UGP4 676 aa3.49□□□□□ -1.85
PRPF39-208ENST00000554785 CFAP99D6REC4 459 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 HRCP23327 699 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 WNT7BP56706 349 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 MTMR2Q13614 643 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 QPCTQ16769 361 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 MYSM1Q5VVJ2 828 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 FBXO31Q5XUX0 539 aaPredicted RBP3.48□□□□□ -1.85
PRPF39-208ENST00000554785 PRR7Q8TB68 274 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 CABLES1Q8TDN4 633 aa3.48□□□□□ -1.85
PRPF39-208ENST00000554785 SPTLC1O15269 473 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 SMPD1P17405 629 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 CSPP1Q1MSJ5 1256 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 RIC3Q7Z5B4 369 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 MRGPRX2Q96LB1 330 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 NUDT12Q9BQG2 462 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 DACH1Q9UI36 760 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 LAMC2Q13753 1193 aa3.47□□□□□ -1.85
PRPF39-208ENST00000554785 NXF1Q9UBU9 619 aaKnown RBP3.47□□□□□ -1.85
PRPF39-208ENST00000554785 J3QL48 77 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 PER1O15534 1290 aaPredicted RBP3.46□□□□□ -1.86
PRPF39-208ENST00000554785 KRTAP4-11Q9BYQ6 195 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 FAM117AQ9C073 453 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 CCNYL3P0C7X3 344 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 GJA5P36382 358 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 RC3H1Q5TC82 1133 aaKnown RBP3.46□□□□□ -1.86
PRPF39-208ENST00000554785 EVA1BQ9NVM1 165 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 POLR3EQ9NVU0 708 aa3.46□□□□□ -1.86
PRPF39-208ENST00000554785 COBLO75128 1261 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 SH3BP2P78314 561 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 PTPRNQ16849 979 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 RTL5Q5HYW3 569 aaPredicted RBP3.45□□□□□ -1.86
PRPF39-208ENST00000554785 KDM4CQ9H3R0 1056 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 MAP10Q9P2G4 905 aa3.45□□□□□ -1.86
PRPF39-208ENST00000554785 PLEKHG3A1L390 1219 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 SIAH2O43255 324 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 LILRB3O75022 631 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 LINC01559Q495D7 138 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 DESI1Q6ICB0 168 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 LYPD8Q6UX82 237 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 BAP1Q92560 729 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 UNC93B1Q9H1C4 597 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 SPDYE5A6NIY4 337 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 PRKCSHP14314 528 aaPredicted RBP3.44□□□□□ -1.86
PRPF39-208ENST00000554785 KCNH2Q12809 1159 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 DIXDC1Q155Q3 683 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 PROCA1Q8NCQ7 364 aaPredicted RBP3.44□□□□□ -1.86
PRPF39-208ENST00000554785 HPS1Q92902 700 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 ZBTB3Q9H5J0 574 aa3.44□□□□□ -1.86
PRPF39-208ENST00000554785 F12P00748 615 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 SNRPBP14678 240 aaKnown RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 TPRNQ4KMQ1 711 aa3.43□□□□□ -1.86
PRPF39-208ENST00000554785 PRPF38BQ5VTL8 546 aaKnown RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 TSC1Q92574 1164 aa3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2BA6NNL0 878 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2EB1AL46 878 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 H3BM21 787 aa3.43□□□□□ -1.86
PRPF39-208ENST00000554785 CLK2P49760 499 aaKnown RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2DQ5VT03 806 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 NUTM2AQ8IVF1 878 aaPredicted RBP3.43□□□□□ -1.86
PRPF39-208ENST00000554785 ALDH1A1P00352 501 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 CTHP32929 405 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 CTDSPL2Q05D32 466 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 MPNDQ8N594 471 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 ZNF511Q8NB15 262 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 EHBP1Q8NDI1 1231 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 FOXJ1Q92949 421 aa3.42□□□□□ -1.86
PRPF39-208ENST00000554785 TUSC1Q2TAM9 212 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 C4orf48Q5BLP8 95 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 TLL2Q9Y6L7 1015 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 WASF2Q9Y6W5 498 aa3.41□□□□□ -1.86
PRPF39-208ENST00000554785 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.41□□□□□ -1.86
PRPF39-208ENST00000554785 CAPN5O15484 640 aaPredicted RBP3.4□□□□□ -1.86
PRPF39-208ENST00000554785 VSIG8P0DPA2 414 aa3.4□□□□□ -1.86
PRPF39-208ENST00000554785 SCARF1Q14162 830 aa3.4□□□□□ -1.86
PRPF39-208ENST00000554785 SKIV2LQ15477 1246 aaKnown RBP3.4□□□□□ -1.86
PRPF39-208ENST00000554785 LRRN4Q8WUT4 740 aa3.4□□□□□ -1.86
PRPF39-208ENST00000554785 RSPH6AQ9H0K4 717 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 1034.1 ms