RNA–Protein interactions for RNA: ENST00000553751.1

FOXA1-203, Transcript of forkhead box A1, humanhuman

TSL 4

Gene FOXA1, Length 507 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-203ENST00000553751 ATAD2Q6PL18 1390 aa28.82■■■□□ 2.2
FOXA1-203ENST00000553751 PLEKHG5O94827 1062 aa28.81■■■□□ 2.2
FOXA1-203ENST00000553751 USP47Q96K76 1375 aa28.8■■■□□ 2.2
FOXA1-203ENST00000553751 ST20-MTHFSA0A0A6YYL1 179 aa28.79■■■□□ 2.2
FOXA1-203ENST00000553751 HAP1P54257 671 aaPredicted RBP28.79■■■□□ 2.2
FOXA1-203ENST00000553751 TESK2Q96S53 571 aa28.79■■■□□ 2.2
FOXA1-203ENST00000553751 USP6P35125 1406 aa28.78■■■□□ 2.2
FOXA1-203ENST00000553751 USP21Q9UK80 565 aa28.78■■■□□ 2.2
FOXA1-203ENST00000553751 BCL9LQ86UU0 1499 aa28.78■■■□□ 2.2
FOXA1-203ENST00000553751 SLIT2O94813 1529 aa28.77■■■□□ 2.2
FOXA1-203ENST00000553751 BRD4O60885 1362 aaPredicted RBP28.76■■■□□ 2.2
FOXA1-203ENST00000553751 PHRF1Q9P1Y6 1649 aaKnown RBP28.76■■■□□ 2.19
FOXA1-203ENST00000553751 AKAP12Q02952 1782 aa28.75■■■□□ 2.19
FOXA1-203ENST00000553751 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.74■■■□□ 2.19
FOXA1-203ENST00000553751 PLCH1Q4KWH8 1693 aa28.74■■■□□ 2.19
FOXA1-203ENST00000553751 QTRT2Q9H974 415 aaKnown RBP28.74■■■□□ 2.19
FOXA1-203ENST00000553751 ATRNO75882 1429 aa28.74■■■□□ 2.19
FOXA1-203ENST00000553751 SSH2Q76I76 1423 aa28.74■■■□□ 2.19
FOXA1-203ENST00000553751 RXRBP28702 533 aa28.73■■■□□ 2.19
FOXA1-203ENST00000553751 CPSF1Q10570 1443 aaKnown RBP28.72■■■□□ 2.19
FOXA1-203ENST00000553751 CDK12Q9NYV4 1490 aaPredicted RBP28.72■■■□□ 2.19
FOXA1-203ENST00000553751 NRKQ7Z2Y5 1582 aa28.71■■■□□ 2.19
FOXA1-203ENST00000553751 NUTM2GQ5VZR2 741 aa28.71■■■□□ 2.19
FOXA1-203ENST00000553751 NWD2Q9ULI1 1742 aa28.7■■■□□ 2.19
FOXA1-203ENST00000553751 ABTB2Q8N961 1025 aa28.7■■■□□ 2.18
FOXA1-203ENST00000553751 TRPC5Q9UL62 973 aaPredicted RBP28.7■■■□□ 2.18
FOXA1-203ENST00000553751 RBM6P78332 1123 aaKnown RBP28.69■■■□□ 2.18
FOXA1-203ENST00000553751 PUS7Q96PZ0 661 aaKnown RBP28.69■■■□□ 2.18
FOXA1-203ENST00000553751 CD163L1Q9NR16 1453 aa28.69■■■□□ 2.18
FOXA1-203ENST00000553751 MON2Q7Z3U7 1717 aa28.69■■■□□ 2.18
FOXA1-203ENST00000553751 USP19O94966 1318 aa28.68■■■□□ 2.18
FOXA1-203ENST00000553751 COL14A1Q05707 1796 aaKnown RBP28.67■■■□□ 2.18
FOXA1-203ENST00000553751 PIK3C2AO00443 1686 aa28.67■■■□□ 2.18
FOXA1-203ENST00000553751 FAM83GA6ND36 823 aa28.67■■■□□ 2.18
FOXA1-203ENST00000553751 ZNF692Q9BU19 519 aaPredicted RBP28.67■■■□□ 2.18
FOXA1-203ENST00000553751 SLC24A1O60721 1099 aa28.66■■■□□ 2.18
FOXA1-203ENST00000553751 UNC5CLQ8IV45 518 aa28.66■■■□□ 2.18
FOXA1-203ENST00000553751 RGS12O14924 1447 aa28.66■■■□□ 2.18
FOXA1-203ENST00000553751 KTN1Q86UP2 1357 aaKnown RBP28.64■■■□□ 2.18
FOXA1-203ENST00000553751 NRAPQ86VF7 1730 aa28.64■■■□□ 2.18
FOXA1-203ENST00000553751 TMC1Q8TDI8 760 aa28.63■■■□□ 2.17
FOXA1-203ENST00000553751 TTC21BQ7Z4L5 1316 aa28.63■■■□□ 2.17
FOXA1-203ENST00000553751 NLRP13Q86W25 1043 aa28.62■■■□□ 2.17
FOXA1-203ENST00000553751 SLC12A5Q9H2X9 1139 aa28.62■■■□□ 2.17
FOXA1-203ENST00000553751 KIAA0232Q92628 1395 aa28.62■■■□□ 2.17
FOXA1-203ENST00000553751 SLIT3O75094 1523 aa28.61■■■□□ 2.17
FOXA1-203ENST00000553751 NINLQ9Y2I6 1382 aa28.61■■■□□ 2.17
FOXA1-203ENST00000553751 GLI3P10071 1580 aa28.6■■■□□ 2.17
FOXA1-203ENST00000553751 TMF1P82094 1093 aa28.6■■■□□ 2.17
FOXA1-203ENST00000553751 PRDM11Q9NQV5 511 aa28.6■■■□□ 2.17
FOXA1-203ENST00000553751 TTC21AQ8NDW8 1320 aa28.59■■■□□ 2.17
FOXA1-203ENST00000553751 A0A1W2PP64 1363 aa28.59■■■□□ 2.17
FOXA1-203ENST00000553751 NLRP6P59044 892 aa28.58■■■□□ 2.17
FOXA1-203ENST00000553751 GJD4Q96KN9 370 aaPredicted RBP28.58■■■□□ 2.17
FOXA1-203ENST00000553751 BTG4Q9NY30 223 aa28.57■■■□□ 2.16
FOXA1-203ENST00000553751 CPDO75976 1380 aa28.57■■■□□ 2.16
FOXA1-203ENST00000553751 ZC3H6P61129 1189 aaKnown RBP28.56■■■□□ 2.16
FOXA1-203ENST00000553751 VPS72Q15906 364 aa28.56■■■□□ 2.16
FOXA1-203ENST00000553751 HDGFL2Q7Z4V5 671 aaPredicted RBP28.56■■■□□ 2.16
FOXA1-203ENST00000553751 GCP02774 474 aa28.55■■■□□ 2.16
FOXA1-203ENST00000553751 EDC4Q6P2E9 1401 aaKnown RBP28.54■■■□□ 2.16
FOXA1-203ENST00000553751 TERF2IPQ9NYB0 399 aa28.54■■■□□ 2.16
FOXA1-203ENST00000553751 CHRNA2Q15822 529 aa28.53■■■□□ 2.16
FOXA1-203ENST00000553751 USP54Q70EL1 1684 aa28.53■■■□□ 2.16
FOXA1-203ENST00000553751 LMO7Q8WWI1 1683 aa28.53■■■□□ 2.16
FOXA1-203ENST00000553751 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.51■■■□□ 2.15
FOXA1-203ENST00000553751 USP31Q70CQ4 1352 aa28.5■■■□□ 2.15
FOXA1-203ENST00000553751 CDCA8Q53HL2 280 aa28.49■■■□□ 2.15
FOXA1-203ENST00000553751 ANKRD36BQ8N2N9 1353 aa28.49■■■□□ 2.15
FOXA1-203ENST00000553751 MYOM1P52179 1685 aa28.48■■■□□ 2.15
FOXA1-203ENST00000553751 EIF4G2P78344 907 aaKnown RBP eCLIP28.48■■■□□ 2.15
FOXA1-203ENST00000553751 CAMTA1Q9Y6Y1 1673 aa28.48■■■□□ 2.15
FOXA1-203ENST00000553751 HSPA5P11021 654 aaKnown RBP28.47■■■□□ 2.15
FOXA1-203ENST00000553751 NME9Q86XW9 330 aa28.47■■■□□ 2.15
FOXA1-203ENST00000553751 NFAT5O94916 1531 aa28.47■■■□□ 2.15
FOXA1-203ENST00000553751 ZRANB1Q9UGI0 708 aa28.46■■■□□ 2.15
FOXA1-203ENST00000553751 CCDC9Q9Y3X0 531 aaKnown RBP28.46■■■□□ 2.15
FOXA1-203ENST00000553751 KCNH5Q8NCM2 988 aa28.43■■■□□ 2.14
FOXA1-203ENST00000553751 OVOS2A0A0J9YW53 1432 aa28.43■■■□□ 2.14
FOXA1-203ENST00000553751 OVOS2Q6IE36 1432 aa28.43■■■□□ 2.14
FOXA1-203ENST00000553751 SPATA31A5Q5VU36 1347 aa28.43■■■□□ 2.14
FOXA1-203ENST00000553751 SPATA31A7Q8IWB4 1347 aa28.43■■■□□ 2.14
FOXA1-203ENST00000553751 COL18A1P39060 1754 aa28.42■■■□□ 2.14
FOXA1-203ENST00000553751 AATKQ6ZMQ8 1374 aa28.42■■■□□ 2.14
FOXA1-203ENST00000553751 STRN4Q9NRL3 753 aa28.41■■■□□ 2.14
FOXA1-203ENST00000553751 COL5A2P05997 1499 aaPredicted RBP28.4■■■□□ 2.14
FOXA1-203ENST00000553751 ONECUT3O60422 494 aaPredicted RBP28.4■■■□□ 2.14
FOXA1-203ENST00000553751 SOX12O15370 315 aa28.39■■■□□ 2.14
FOXA1-203ENST00000553751 ZBTB7CA1YPR0 619 aa28.38■■■□□ 2.13
FOXA1-203ENST00000553751 ARHGEF25Q86VW2 580 aa28.38■■■□□ 2.13
FOXA1-203ENST00000553751 BRWD3Q6RI45 1802 aa28.37■■■□□ 2.13
FOXA1-203ENST00000553751 SEPT12Q8IYM1 358 aa28.37■■■□□ 2.13
FOXA1-203ENST00000553751 UPF1Q92900 1129 aaKnown RBP eCLIP28.37■■■□□ 2.13
FOXA1-203ENST00000553751 SPATA31A1Q5TZJ5 1347 aa28.37■■■□□ 2.13
FOXA1-203ENST00000553751 THSD7AQ9UPZ6 1657 aa28.36■■■□□ 2.13
FOXA1-203ENST00000553751 ABCC6O95255 1503 aa28.35■■■□□ 2.13
FOXA1-203ENST00000553751 FAM98CQ17RN3 349 aaKnown RBP28.35■■■□□ 2.13
FOXA1-203ENST00000553751 EVA1CP58658 441 aa28.34■■■□□ 2.13
FOXA1-203ENST00000553751 LARP1Q6PKG0 1096 aaKnown RBP28.34■■■□□ 2.13
FOXA1-203ENST00000553751 AXIN2Q9Y2T1 843 aa28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms