RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 LOC105371045A0A1W2PR82 267 aa11.44□□□□□ -0.58
ATXN3-219ENST00000553488 GPHNQ9NQX3 736 aaPredicted RBP11.44□□□□□ -0.58
ATXN3-219ENST00000553488 CHIC2Q9UKJ5 165 aa11.44□□□□□ -0.58
ATXN3-219ENST00000553488 NRXN3Q9Y4C0 1643 aa11.44□□□□□ -0.58
ATXN3-219ENST00000553488 ANKRD50Q9ULJ7 1429 aa11.43□□□□□ -0.58
ATXN3-219ENST00000553488 NHSL1Q5SYE7 1610 aa11.43□□□□□ -0.58
ATXN3-219ENST00000553488 IQGAP3Q86VI3 1631 aa11.43□□□□□ -0.58
ATXN3-219ENST00000553488 CRISPLD2Q9H0B8 497 aa11.43□□□□□ -0.58
ATXN3-219ENST00000553488 SPATA31A6Q5VVP1 1343 aa11.41□□□□□ -0.58
ATXN3-219ENST00000553488 TRPM2O94759 1503 aa11.41□□□□□ -0.58
ATXN3-219ENST00000553488 POTEMA6NI47 508 aa11.41□□□□□ -0.58
ATXN3-219ENST00000553488 DOK7Q18PE1 504 aa11.41□□□□□ -0.58
ATXN3-219ENST00000553488 TMC2Q8TDI7 906 aa11.41□□□□□ -0.58
ATXN3-219ENST00000553488 PIK3R4Q99570 1358 aa11.41□□□□□ -0.58
ATXN3-219ENST00000553488 FOXK1P85037 733 aa11.4□□□□□ -0.58
ATXN3-219ENST00000553488 POTEGQ6S5H5 508 aa11.4□□□□□ -0.58
ATXN3-219ENST00000553488 SPRYD3Q8NCJ5 442 aa11.4□□□□□ -0.58
ATXN3-219ENST00000553488 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.4□□□□□ -0.58
ATXN3-219ENST00000553488 TBX22Q9Y458 520 aa11.4□□□□□ -0.58
ATXN3-219ENST00000553488 PTPRUQ92729 1446 aa11.4□□□□□ -0.58
ATXN3-219ENST00000553488 ASXL1Q8IXJ9 1541 aa11.4□□□□□ -0.59
ATXN3-219ENST00000553488 CDK12Q9NYV4 1490 aaPredicted RBP11.39□□□□□ -0.59
ATXN3-219ENST00000553488 EP400Q96L91 3159 aa11.39□□□□□ -0.59
ATXN3-219ENST00000553488 DCCP43146 1447 aa11.39□□□□□ -0.59
ATXN3-219ENST00000553488 SETBP1Q9Y6X0 1596 aa11.38□□□□□ -0.59
ATXN3-219ENST00000553488 CADPS2Q86UW7 1296 aa11.38□□□□□ -0.59
ATXN3-219ENST00000553488 UPF1Q92900 1129 aaKnown RBP eCLIP11.38□□□□□ -0.59
ATXN3-219ENST00000553488 BCANQ96GW7 911 aa11.38□□□□□ -0.59
ATXN3-219ENST00000553488 SPHKAPQ2M3C7 1700 aa11.38□□□□□ -0.59
ATXN3-219ENST00000553488 NALCNQ8IZF0 1738 aa11.38□□□□□ -0.59
ATXN3-219ENST00000553488 PPP1R15AO75807 674 aaPredicted RBP11.37□□□□□ -0.59
ATXN3-219ENST00000553488 SLC34A2O95436 690 aa11.37□□□□□ -0.59
ATXN3-219ENST00000553488 ZSWIM6Q9HCJ5 1215 aa11.37□□□□□ -0.59
ATXN3-219ENST00000553488 MST1RQ04912 1400 aa11.36□□□□□ -0.59
ATXN3-219ENST00000553488 HOXB1P14653 301 aaPredicted RBP11.36□□□□□ -0.59
ATXN3-219ENST00000553488 DSG2Q14126 1118 aa11.36□□□□□ -0.59
ATXN3-219ENST00000553488 ZNF772Q68DY9 489 aaPredicted RBP11.36□□□□□ -0.59
ATXN3-219ENST00000553488 GPR153Q6NV75 609 aa11.36□□□□□ -0.59
ATXN3-219ENST00000553488 SETD5Q9C0A6 1442 aa11.35□□□□□ -0.59
ATXN3-219ENST00000553488 LAMC1P11047 1609 aa11.35□□□□□ -0.59
ATXN3-219ENST00000553488 BRINP3Q76B58 766 aa11.35□□□□□ -0.59
ATXN3-219ENST00000553488 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.35□□□□□ -0.59
ATXN3-219ENST00000553488 C19orf44Q9H6X5 657 aa11.35□□□□□ -0.59
ATXN3-219ENST00000553488 HDGFP51858 240 aaKnown RBP11.34□□□□□ -0.59
ATXN3-219ENST00000553488 TRIM52Q96A61 297 aa11.34□□□□□ -0.59
ATXN3-219ENST00000553488 RGS12O14924 1447 aa11.34□□□□□ -0.59
ATXN3-219ENST00000553488 MEX3CQ5U5Q3 659 aaKnown RBP11.33□□□□□ -0.6
ATXN3-219ENST00000553488 NUTM2DQ5VT03 806 aaPredicted RBP11.33□□□□□ -0.6
ATXN3-219ENST00000553488 PAXIP1Q6ZW49 1069 aaPredicted RBP11.33□□□□□ -0.6
ATXN3-219ENST00000553488 ROCK1Q13464 1354 aa11.32□□□□□ -0.6
ATXN3-219ENST00000553488 ATF3P18847 181 aa11.32□□□□□ -0.6
ATXN3-219ENST00000553488 PDE4AP27815 886 aa11.32□□□□□ -0.6
ATXN3-219ENST00000553488 MFSD10Q14728 455 aa11.32□□□□□ -0.6
ATXN3-219ENST00000553488 C14orf37Q86TY3 774 aa11.32□□□□□ -0.6
ATXN3-219ENST00000553488 PLPP6Q8IY26 295 aa11.32□□□□□ -0.6
ATXN3-219ENST00000553488 NEXMIFQ5QGS0 1516 aa11.31□□□□□ -0.6
ATXN3-219ENST00000553488 RIMBP2O15034 1052 aa11.31□□□□□ -0.6
ATXN3-219ENST00000553488 ZNF710Q8N1W2 664 aa11.31□□□□□ -0.6
ATXN3-219ENST00000553488 AMOTL2Q9Y2J4 779 aa11.31□□□□□ -0.6
ATXN3-219ENST00000553488 ADGRL3Q9HAR2 1447 aa11.31□□□□□ -0.6
ATXN3-219ENST00000553488 AFF2P51816 1311 aa11.31□□□□□ -0.6
ATXN3-219ENST00000553488 PNPLA6Q8IY17 1366 aa11.3□□□□□ -0.6
ATXN3-219ENST00000553488 RXRBP28702 533 aa11.3□□□□□ -0.6
ATXN3-219ENST00000553488 FAM50AQ14320 339 aaKnown RBP11.3□□□□□ -0.6
ATXN3-219ENST00000553488 MARVELD3Q96A59 401 aa11.3□□□□□ -0.6
ATXN3-219ENST00000553488 CLTCL1P53675 1640 aa11.3□□□□□ -0.6
ATXN3-219ENST00000553488 CFAP44Q96MT7 982 aa11.29□□□□□ -0.6
ATXN3-219ENST00000553488 METP08581 1390 aa11.28□□□□□ -0.6
ATXN3-219ENST00000553488 PTCD2Q8WV60 388 aaKnown RBP11.28□□□□□ -0.6
ATXN3-219ENST00000553488 KIF1BO60333 1816 aa11.28□□□□□ -0.6
ATXN3-219ENST00000553488 COL22A1Q8NFW1 1626 aaPredicted RBP11.27□□□□□ -0.6
ATXN3-219ENST00000553488 POTEB3A0JP26 581 aa11.27□□□□□ -0.61
ATXN3-219ENST00000553488 NUTM2BA6NNL0 878 aaPredicted RBP11.27□□□□□ -0.61
ATXN3-219ENST00000553488 NUTM2EB1AL46 878 aaPredicted RBP11.27□□□□□ -0.61
ATXN3-219ENST00000553488 PPP1R15BQ5SWA1 713 aa11.27□□□□□ -0.61
ATXN3-219ENST00000553488 POTEBQ6S5H4 581 aa11.27□□□□□ -0.61
ATXN3-219ENST00000553488 NUTM2AQ8IVF1 878 aaPredicted RBP11.27□□□□□ -0.61
ATXN3-219ENST00000553488 PRAG1Q86YV5 1406 aa11.26□□□□□ -0.61
ATXN3-219ENST00000553488 MARF1Q9Y4F3 1742 aaKnown RBP11.26□□□□□ -0.61
ATXN3-219ENST00000553488 ARSIQ5FYB1 569 aa11.26□□□□□ -0.61
ATXN3-219ENST00000553488 NUP155O75694 1391 aa11.26□□□□□ -0.61
ATXN3-219ENST00000553488 PTCH1Q13635 1447 aa11.26□□□□□ -0.61
ATXN3-219ENST00000553488 C1orf167Q5SNV9 1468 aa11.25□□□□□ -0.61
ATXN3-219ENST00000553488 EMP3P54852 163 aa11.25□□□□□ -0.61
ATXN3-219ENST00000553488 LARP6Q9BRS8 491 aaKnown RBP11.25□□□□□ -0.61
ATXN3-219ENST00000553488 PCDHGA4Q9Y5G9 962 aa11.25□□□□□ -0.61
ATXN3-219ENST00000553488 DDX17Q92841 729 aaKnown RBP11.24□□□□□ -0.61
ATXN3-219ENST00000553488 KHSRPQ92945 711 aaKnown RBP eCLIP11.24□□□□□ -0.61
ATXN3-219ENST00000553488 LRRC59Q96AG4 307 aaKnown RBP11.24□□□□□ -0.61
ATXN3-219ENST00000553488 DDX27Q96GQ7 796 aaKnown RBP11.24□□□□□ -0.61
ATXN3-219ENST00000553488 PCDH10Q9P2E7 1040 aa11.24□□□□□ -0.61
ATXN3-219ENST00000553488 RBM6P78332 1123 aaKnown RBP11.23□□□□□ -0.61
ATXN3-219ENST00000553488 C8orf37Q96NL8 207 aa11.23□□□□□ -0.61
ATXN3-219ENST00000553488 PPLO60437 1756 aa11.23□□□□□ -0.61
ATXN3-219ENST00000553488 OXER1Q8TDS5 423 aa11.22□□□□□ -0.61
ATXN3-219ENST00000553488 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.21□□□□□ -0.61
ATXN3-219ENST00000553488 CDC42BPGQ6DT37 1551 aa11.21□□□□□ -0.61
ATXN3-219ENST00000553488 MYOM2P54296 1465 aa11.21□□□□□ -0.61
ATXN3-219ENST00000553488 ATRNO75882 1429 aa11.21□□□□□ -0.61
ATXN3-219ENST00000553488 QTRT2Q9H974 415 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms