RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 QTRT2Q9H974 415 aaKnown RBP26.65■■□□□ 1.86
HDAC4-217ENST00000553145 CABP1Q9NZU7 370 aa26.65■■□□□ 1.86
HDAC4-217ENST00000553145 BCL9LQ86UU0 1499 aa26.65■■□□□ 1.86
HDAC4-217ENST00000553145 RXRBP28702 533 aa26.64■■□□□ 1.86
HDAC4-217ENST00000553145 CCER1Q8TC90 406 aaPredicted RBP26.64■■□□□ 1.86
HDAC4-217ENST00000553145 TIMELESSQ9UNS1 1208 aa26.63■■□□□ 1.85
HDAC4-217ENST00000553145 SLIT2O94813 1529 aa26.63■■□□□ 1.85
HDAC4-217ENST00000553145 ATRNO75882 1429 aa26.62■■□□□ 1.85
HDAC4-217ENST00000553145 PLCH1Q4KWH8 1693 aa26.6■■□□□ 1.85
HDAC4-217ENST00000553145 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.6■■□□□ 1.85
HDAC4-217ENST00000553145 CDK12Q9NYV4 1490 aaPredicted RBP26.6■■□□□ 1.85
HDAC4-217ENST00000553145 USP6P35125 1406 aa26.59■■□□□ 1.85
HDAC4-217ENST00000553145 PHRF1Q9P1Y6 1649 aaKnown RBP26.59■■□□□ 1.85
HDAC4-217ENST00000553145 ATAD2Q6PL18 1390 aa26.58■■□□□ 1.85
HDAC4-217ENST00000553145 RBM6P78332 1123 aaKnown RBP26.58■■□□□ 1.85
HDAC4-217ENST00000553145 NUTM2GQ5VZR2 741 aa26.58■■□□□ 1.85
HDAC4-217ENST00000553145 TRPC5Q9UL62 973 aaPredicted RBP26.58■■□□□ 1.85
HDAC4-217ENST00000553145 ST20-MTHFSA0A0A6YYL1 179 aa26.57■■□□□ 1.84
HDAC4-217ENST00000553145 TESK2Q96S53 571 aa26.57■■□□□ 1.84
HDAC4-217ENST00000553145 RGS12O14924 1447 aa26.56■■□□□ 1.84
HDAC4-217ENST00000553145 AKAP12Q02952 1782 aa26.56■■□□□ 1.84
HDAC4-217ENST00000553145 FAM83GA6ND36 823 aa26.55■■□□□ 1.84
HDAC4-217ENST00000553145 USP47Q96K76 1375 aa26.55■■□□□ 1.84
HDAC4-217ENST00000553145 SSH2Q76I76 1423 aa26.55■■□□□ 1.84
HDAC4-217ENST00000553145 NWD2Q9ULI1 1742 aa26.54■■□□□ 1.84
HDAC4-217ENST00000553145 UNC5CLQ8IV45 518 aa26.54■■□□□ 1.84
HDAC4-217ENST00000553145 BRD4O60885 1362 aaPredicted RBP26.54■■□□□ 1.84
HDAC4-217ENST00000553145 ABTB2Q8N961 1025 aa26.53■■□□□ 1.84
HDAC4-217ENST00000553145 COL14A1Q05707 1796 aaKnown RBP26.52■■□□□ 1.84
HDAC4-217ENST00000553145 CPSF1Q10570 1443 aaKnown RBP26.52■■□□□ 1.84
HDAC4-217ENST00000553145 NRKQ7Z2Y5 1582 aa26.52■■□□□ 1.84
HDAC4-217ENST00000553145 NRAPQ86VF7 1730 aa26.51■■□□□ 1.83
HDAC4-217ENST00000553145 USP19O94966 1318 aa26.5■■□□□ 1.83
HDAC4-217ENST00000553145 PIK3C2AO00443 1686 aa26.5■■□□□ 1.83
HDAC4-217ENST00000553145 GLI3P10071 1580 aa26.5■■□□□ 1.83
HDAC4-217ENST00000553145 CD163L1Q9NR16 1453 aa26.49■■□□□ 1.83
HDAC4-217ENST00000553145 MON2Q7Z3U7 1717 aa26.48■■□□□ 1.83
HDAC4-217ENST00000553145 KIAA0232Q92628 1395 aa26.48■■□□□ 1.83
HDAC4-217ENST00000553145 GJD4Q96KN9 370 aaPredicted RBP26.48■■□□□ 1.83
HDAC4-217ENST00000553145 ZNF692Q9BU19 519 aaPredicted RBP26.47■■□□□ 1.83
HDAC4-217ENST00000553145 PRDM11Q9NQV5 511 aa26.46■■□□□ 1.83
HDAC4-217ENST00000553145 KTN1Q86UP2 1357 aaKnown RBP26.46■■□□□ 1.83
HDAC4-217ENST00000553145 TTC21BQ7Z4L5 1316 aa26.45■■□□□ 1.83
HDAC4-217ENST00000553145 ZC3H6P61129 1189 aaKnown RBP26.45■■□□□ 1.82
HDAC4-217ENST00000553145 NLRP13Q86W25 1043 aa26.45■■□□□ 1.82
HDAC4-217ENST00000553145 PUS7Q96PZ0 661 aaKnown RBP26.45■■□□□ 1.82
HDAC4-217ENST00000553145 SLC12A5Q9H2X9 1139 aa26.45■■□□□ 1.82
HDAC4-217ENST00000553145 BTG4Q9NY30 223 aa26.45■■□□□ 1.82
HDAC4-217ENST00000553145 VPS72Q15906 364 aa26.44■■□□□ 1.82
HDAC4-217ENST00000553145 TMC1Q8TDI8 760 aa26.44■■□□□ 1.82
HDAC4-217ENST00000553145 SLIT3O75094 1523 aa26.44■■□□□ 1.82
HDAC4-217ENST00000553145 CHRNA2Q15822 529 aa26.43■■□□□ 1.82
HDAC4-217ENST00000553145 NLRP6P59044 892 aa26.42■■□□□ 1.82
HDAC4-217ENST00000553145 GCP02774 474 aa26.4■■□□□ 1.82
HDAC4-217ENST00000553145 TTC21AQ8NDW8 1320 aa26.39■■□□□ 1.82
HDAC4-217ENST00000553145 A0A1W2PP64 1363 aa26.39■■□□□ 1.82
HDAC4-217ENST00000553145 CPDO75976 1380 aa26.39■■□□□ 1.82
HDAC4-217ENST00000553145 LMO7Q8WWI1 1683 aa26.38■■□□□ 1.81
HDAC4-217ENST00000553145 SLC24A1O60721 1099 aa26.38■■□□□ 1.81
HDAC4-217ENST00000553145 TMF1P82094 1093 aa26.38■■□□□ 1.81
HDAC4-217ENST00000553145 CCDC9Q9Y3X0 531 aaKnown RBP26.38■■□□□ 1.81
HDAC4-217ENST00000553145 HDGFL2Q7Z4V5 671 aaPredicted RBP26.36■■□□□ 1.81
HDAC4-217ENST00000553145 NINLQ9Y2I6 1382 aa26.35■■□□□ 1.81
HDAC4-217ENST00000553145 CAMTA1Q9Y6Y1 1673 aa26.35■■□□□ 1.81
HDAC4-217ENST00000553145 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.35■■□□□ 1.81
HDAC4-217ENST00000553145 EDC4Q6P2E9 1401 aaKnown RBP26.34■■□□□ 1.81
HDAC4-217ENST00000553145 UPF1Q92900 1129 aaKnown RBP eCLIP26.34■■□□□ 1.81
HDAC4-217ENST00000553145 TERF2IPQ9NYB0 399 aa26.34■■□□□ 1.81
HDAC4-217ENST00000553145 ZRANB1Q9UGI0 708 aa26.34■■□□□ 1.81
HDAC4-217ENST00000553145 USP54Q70EL1 1684 aa26.33■■□□□ 1.81
HDAC4-217ENST00000553145 NME9Q86XW9 330 aa26.32■■□□□ 1.8
HDAC4-217ENST00000553145 SPATA31A5Q5VU36 1347 aa26.32■■□□□ 1.8
HDAC4-217ENST00000553145 SPATA31A7Q8IWB4 1347 aa26.32■■□□□ 1.8
HDAC4-217ENST00000553145 STRN4Q9NRL3 753 aa26.31■■□□□ 1.8
HDAC4-217ENST00000553145 USP31Q70CQ4 1352 aa26.31■■□□□ 1.8
HDAC4-217ENST00000553145 BRWD3Q6RI45 1802 aa26.3■■□□□ 1.8
HDAC4-217ENST00000553145 NFAT5O94916 1531 aa26.3■■□□□ 1.8
HDAC4-217ENST00000553145 ZBTB7CA1YPR0 619 aa26.29■■□□□ 1.8
HDAC4-217ENST00000553145 ONECUT3O60422 494 aaPredicted RBP26.29■■□□□ 1.8
HDAC4-217ENST00000553145 SEPT12Q8IYM1 358 aa26.29■■□□□ 1.8
HDAC4-217ENST00000553145 COL18A1P39060 1754 aa26.28■■□□□ 1.8
HDAC4-217ENST00000553145 SOX12O15370 315 aa26.28■■□□□ 1.8
HDAC4-217ENST00000553145 ANKRD36BQ8N2N9 1353 aa26.28■■□□□ 1.8
HDAC4-217ENST00000553145 MYOM1P52179 1685 aa26.28■■□□□ 1.8
HDAC4-217ENST00000553145 FAM98CQ17RN3 349 aaKnown RBP26.27■■□□□ 1.8
HDAC4-217ENST00000553145 COL5A2P05997 1499 aaPredicted RBP26.26■■□□□ 1.79
HDAC4-217ENST00000553145 AATKQ6ZMQ8 1374 aa26.26■■□□□ 1.79
HDAC4-217ENST00000553145 SPATA31A1Q5TZJ5 1347 aa26.26■■□□□ 1.79
HDAC4-217ENST00000553145 KCNH5Q8NCM2 988 aa26.26■■□□□ 1.79
HDAC4-217ENST00000553145 HSPA5P11021 654 aaKnown RBP26.25■■□□□ 1.79
HDAC4-217ENST00000553145 CDCA8Q53HL2 280 aa26.25■■□□□ 1.79
HDAC4-217ENST00000553145 THSD7AQ9UPZ6 1657 aa26.25■■□□□ 1.79
HDAC4-217ENST00000553145 OVOS2A0A0J9YW53 1432 aa26.24■■□□□ 1.79
HDAC4-217ENST00000553145 OVOS2Q6IE36 1432 aa26.24■■□□□ 1.79
HDAC4-217ENST00000553145 EIF4G2P78344 907 aaKnown RBP eCLIP26.24■■□□□ 1.79
HDAC4-217ENST00000553145 LARP1Q6PKG0 1096 aaKnown RBP26.24■■□□□ 1.79
HDAC4-217ENST00000553145 ARHGEF25Q86VW2 580 aa26.24■■□□□ 1.79
HDAC4-217ENST00000553145 EVA1CP58658 441 aa26.23■■□□□ 1.79
HDAC4-217ENST00000553145 A0A0G2JS52 829 aa26.21■■□□□ 1.79
HDAC4-217ENST00000553145 MYT1Q01538 1121 aa26.21■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms