RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 BLMP54132 1417 aaPredicted RBP16.62■□□□□ 0.25
NEK3-204ENST00000552973 CHRNA2Q15822 529 aa16.62■□□□□ 0.25
NEK3-204ENST00000552973 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
NEK3-204ENST00000552973 ACEP12821 1306 aa16.62■□□□□ 0.25
NEK3-204ENST00000552973 ATP7BP35670 1465 aa16.61■□□□□ 0.25
NEK3-204ENST00000552973 ZC3H6P61129 1189 aaKnown RBP16.61■□□□□ 0.25
NEK3-204ENST00000552973 NBPF8Q3BBV2 869 aa16.61■□□□□ 0.25
NEK3-204ENST00000552973 FAM182BQ5T319 152 aa16.61■□□□□ 0.25
NEK3-204ENST00000552973 TRPM3Q9HCF6 1732 aaPredicted RBP16.6■□□□□ 0.25
NEK3-204ENST00000552973 STRN4Q9NRL3 753 aa16.6■□□□□ 0.25
NEK3-204ENST00000552973 PLCH1Q4KWH8 1693 aa16.59■□□□□ 0.25
NEK3-204ENST00000552973 SRPK2P78362 688 aaKnown RBP16.59■□□□□ 0.25
NEK3-204ENST00000552973 CABP2Q9NPB3 220 aa16.59■□□□□ 0.25
NEK3-204ENST00000552973 SPATA31A5Q5VU36 1347 aa16.59■□□□□ 0.25
NEK3-204ENST00000552973 SPATA31A7Q8IWB4 1347 aa16.59■□□□□ 0.25
NEK3-204ENST00000552973 KIAA0232Q92628 1395 aa16.59■□□□□ 0.25
NEK3-204ENST00000552973 ABCA3Q99758 1704 aa16.59■□□□□ 0.25
NEK3-204ENST00000552973 PLEKHG3A1L390 1219 aa16.58■□□□□ 0.24
NEK3-204ENST00000552973 SIN3AQ96ST3 1273 aa16.58■□□□□ 0.24
NEK3-204ENST00000552973 ARHGEF28Q8N1W1 1705 aaKnown RBP16.57■□□□□ 0.24
NEK3-204ENST00000552973 ALS2Q96Q42 1657 aa16.57■□□□□ 0.24
NEK3-204ENST00000552973 ABTB2Q8N961 1025 aa16.57■□□□□ 0.24
NEK3-204ENST00000552973 L3MBTL2Q969R5 705 aa16.57■□□□□ 0.24
NEK3-204ENST00000552973 NWD2Q9ULI1 1742 aa16.56■□□□□ 0.24
NEK3-204ENST00000552973 CENPJQ9HC77 1338 aaPredicted RBP16.56■□□□□ 0.24
NEK3-204ENST00000552973 USP35Q9P2H5 1018 aa16.56■□□□□ 0.24
NEK3-204ENST00000552973 POLR3AO14802 1390 aaPredicted RBP16.55■□□□□ 0.24
NEK3-204ENST00000552973 EVA1CP58658 441 aa16.55■□□□□ 0.24
NEK3-204ENST00000552973 NEUROD1Q13562 356 aa16.55■□□□□ 0.24
NEK3-204ENST00000552973 BRWD3Q6RI45 1802 aa16.54■□□□□ 0.24
NEK3-204ENST00000552973 COL14A1Q05707 1796 aaKnown RBP16.54■□□□□ 0.24
NEK3-204ENST00000552973 SPATA31A1Q5TZJ5 1347 aa16.53■□□□□ 0.24
NEK3-204ENST00000552973 BAG6P46379 1132 aa16.53■□□□□ 0.24
NEK3-204ENST00000552973 EN1Q05925 392 aaPredicted RBP16.53■□□□□ 0.24
NEK3-204ENST00000552973 NRAPQ86VF7 1730 aa16.53■□□□□ 0.24
NEK3-204ENST00000552973 CABP1Q9NZU7 370 aa16.52■□□□□ 0.24
NEK3-204ENST00000552973 PPIP5K1Q6PFW1 1433 aa16.52■□□□□ 0.23
NEK3-204ENST00000552973 ZBTB7CA1YPR0 619 aa16.51■□□□□ 0.23
NEK3-204ENST00000552973 PSDA5PKW4 1024 aaPredicted RBP16.51■□□□□ 0.23
NEK3-204ENST00000552973 LARP1Q6PKG0 1096 aaKnown RBP16.5■□□□□ 0.23
NEK3-204ENST00000552973 NLRP13Q86W25 1043 aa16.5■□□□□ 0.23
NEK3-204ENST00000552973 EP400Q96L91 3159 aa16.5■□□□□ 0.23
NEK3-204ENST00000552973 GCP02774 474 aa16.49■□□□□ 0.23
NEK3-204ENST00000552973 ITSN1Q15811 1721 aa16.48■□□□□ 0.23
NEK3-204ENST00000552973 KIAA1210Q9ULL0 1709 aa16.48■□□□□ 0.23
NEK3-204ENST00000552973 CRYBG1Q9Y4K1 1723 aa16.48■□□□□ 0.23
NEK3-204ENST00000552973 USP19O94966 1318 aa16.47■□□□□ 0.23
NEK3-204ENST00000552973 TRIM37O94972 964 aa16.47■□□□□ 0.23
NEK3-204ENST00000552973 NLRP6P59044 892 aa16.47■□□□□ 0.23
NEK3-204ENST00000552973 SSH2Q76I76 1423 aa16.46■□□□□ 0.23
NEK3-204ENST00000552973 EZH2Q15910 746 aaKnown RBP16.46■□□□□ 0.23
NEK3-204ENST00000552973 PDE3BQ13370 1112 aa16.45■□□□□ 0.22
NEK3-204ENST00000552973 FAM196AQ6ZSG2 479 aa16.45■□□□□ 0.22
NEK3-204ENST00000552973 TCP11L2Q8N4U5 519 aa16.45■□□□□ 0.22
NEK3-204ENST00000552973 TOPAZ1Q8N9V7 1692 aa16.45■□□□□ 0.22
NEK3-204ENST00000552973 EVC2Q86UK5 1308 aa16.45■□□□□ 0.22
NEK3-204ENST00000552973 CAMTA1Q9Y6Y1 1673 aa16.44■□□□□ 0.22
NEK3-204ENST00000552973 ROCK2O75116 1388 aaKnown RBP16.44■□□□□ 0.22
NEK3-204ENST00000552973 CPDO75976 1380 aa16.44■□□□□ 0.22
NEK3-204ENST00000552973 BARGINQ6ZT62 677 aa16.44■□□□□ 0.22
NEK3-204ENST00000552973 PHRF1Q9P1Y6 1649 aaKnown RBP16.44■□□□□ 0.22
NEK3-204ENST00000552973 APBA3O96018 575 aa16.43■□□□□ 0.22
NEK3-204ENST00000552973 R3HDM1Q15032 1099 aaKnown RBP16.43■□□□□ 0.22
NEK3-204ENST00000552973 USP6P35125 1406 aa16.43■□□□□ 0.22
NEK3-204ENST00000552973 THSD7AQ9UPZ6 1657 aa16.43■□□□□ 0.22
NEK3-204ENST00000552973 NRKQ7Z2Y5 1582 aa16.42■□□□□ 0.22
NEK3-204ENST00000552973 SOX12O15370 315 aa16.41■□□□□ 0.22
NEK3-204ENST00000552973 CAMKK2Q96RR4 588 aa16.4■□□□□ 0.22
NEK3-204ENST00000552973 BRD4O60885 1362 aaPredicted RBP16.39■□□□□ 0.21
NEK3-204ENST00000552973 THRAP3Q9Y2W1 955 aaKnown RBP16.39■□□□□ 0.21
NEK3-204ENST00000552973 TTC21BQ7Z4L5 1316 aa16.39■□□□□ 0.21
NEK3-204ENST00000552973 QRICH2Q9H0J4 1663 aa16.38■□□□□ 0.21
NEK3-204ENST00000552973 COL5A2P05997 1499 aaPredicted RBP16.38■□□□□ 0.21
NEK3-204ENST00000552973 TOM1L2Q6ZVM7 507 aa16.38■□□□□ 0.21
NEK3-204ENST00000552973 ZNF692Q9BU19 519 aaPredicted RBP16.38■□□□□ 0.21
NEK3-204ENST00000552973 AXIN2Q9Y2T1 843 aa16.38■□□□□ 0.21
NEK3-204ENST00000552973 SRCAPQ6ZRS2 3230 aa16.37■□□□□ 0.21
NEK3-204ENST00000552973 AATKQ6ZMQ8 1374 aa16.36■□□□□ 0.21
NEK3-204ENST00000552973 DISP2A7MBM2 1401 aa16.36■□□□□ 0.21
NEK3-204ENST00000552973 LMO7Q8WWI1 1683 aa16.35■□□□□ 0.21
NEK3-204ENST00000552973 CARD11Q9BXL7 1154 aa16.35■□□□□ 0.21
NEK3-204ENST00000552973 CRB1P82279 1406 aa16.35■□□□□ 0.21
NEK3-204ENST00000552973 TRPM1Q7Z4N2 1603 aa16.34■□□□□ 0.21
NEK3-204ENST00000552973 CSB-PGBD3P0DP91 1061 aa16.34■□□□□ 0.21
NEK3-204ENST00000552973 ARHGEF25Q86VW2 580 aa16.34■□□□□ 0.21
NEK3-204ENST00000552973 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.34■□□□□ 0.21
NEK3-204ENST00000552973 KCNH5Q8NCM2 988 aa16.34■□□□□ 0.21
NEK3-204ENST00000552973 RGPD1P0DJD0 1748 aa16.33■□□□□ 0.21
NEK3-204ENST00000552973 DDB1Q16531 1140 aa16.33■□□□□ 0.2
NEK3-204ENST00000552973 TMC1Q8TDI8 760 aa16.33■□□□□ 0.2
NEK3-204ENST00000552973 KTN1Q86UP2 1357 aaKnown RBP16.33■□□□□ 0.2
NEK3-204ENST00000552973 SLIT3O75094 1523 aa16.32■□□□□ 0.2
NEK3-204ENST00000552973 WDR17Q8IZU2 1322 aa16.31■□□□□ 0.2
NEK3-204ENST00000552973 TTC21AQ8NDW8 1320 aa16.31■□□□□ 0.2
NEK3-204ENST00000552973 CPSF1Q10570 1443 aaKnown RBP16.3■□□□□ 0.2
NEK3-204ENST00000552973 NBPF14Q5TI25 921 aa16.3■□□□□ 0.2
NEK3-204ENST00000552973 PTF1AQ7RTS3 328 aa16.3■□□□□ 0.2
NEK3-204ENST00000552973 SLC12A5Q9H2X9 1139 aa16.3■□□□□ 0.2
NEK3-204ENST00000552973 TNS1Q9HBL0 1735 aaKnown RBP16.3■□□□□ 0.2
NEK3-204ENST00000552973 NME9Q86XW9 330 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms