RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 FAM98CQ17RN3 349 aaKnown RBP17.33■□□□□ 0.36
CKAP4-202ENST00000552828 NRAPQ86VF7 1730 aa17.33■□□□□ 0.36
CKAP4-202ENST00000552828 COL14A1Q05707 1796 aaKnown RBP17.32■□□□□ 0.36
CKAP4-202ENST00000552828 SPATA31A5Q5VU36 1347 aa17.31■□□□□ 0.36
CKAP4-202ENST00000552828 SPATA31A7Q8IWB4 1347 aa17.31■□□□□ 0.36
CKAP4-202ENST00000552828 NUDT16Q96DE0 195 aaKnown RBP17.31■□□□□ 0.36
CKAP4-202ENST00000552828 ATP7BP35670 1465 aa17.31■□□□□ 0.36
CKAP4-202ENST00000552828 PAK3O75914 559 aaPredicted RBP17.29■□□□□ 0.36
CKAP4-202ENST00000552828 PRDM11Q9NQV5 511 aa17.28■□□□□ 0.36
CKAP4-202ENST00000552828 POLR3AO14802 1390 aaPredicted RBP17.28■□□□□ 0.36
CKAP4-202ENST00000552828 CRYBG1Q9Y4K1 1723 aa17.27■□□□□ 0.36
CKAP4-202ENST00000552828 A0A0G2JS52 829 aa17.27■□□□□ 0.36
CKAP4-202ENST00000552828 BAG6P46379 1132 aa17.27■□□□□ 0.36
CKAP4-202ENST00000552828 MYT1Q01538 1121 aa17.27■□□□□ 0.36
CKAP4-202ENST00000552828 CDK19Q9BWU1 502 aa17.27■□□□□ 0.36
CKAP4-202ENST00000552828 ARHGEF28Q8N1W1 1705 aaKnown RBP17.27■□□□□ 0.35
CKAP4-202ENST00000552828 PLEKHG3A1L390 1219 aa17.26■□□□□ 0.35
CKAP4-202ENST00000552828 CCDC61Q9Y6R9 512 aa17.26■□□□□ 0.35
CKAP4-202ENST00000552828 KIAA0232Q92628 1395 aa17.26■□□□□ 0.35
CKAP4-202ENST00000552828 NBPF8Q3BBV2 869 aa17.25■□□□□ 0.35
CKAP4-202ENST00000552828 SPATA31A1Q5TZJ5 1347 aa17.24■□□□□ 0.35
CKAP4-202ENST00000552828 ACEP12821 1306 aa17.23■□□□□ 0.35
CKAP4-202ENST00000552828 THSD7AQ9UPZ6 1657 aa17.23■□□□□ 0.35
CKAP4-202ENST00000552828 DISP2A7MBM2 1401 aa17.23■□□□□ 0.35
CKAP4-202ENST00000552828 ITSN1Q15811 1721 aa17.23■□□□□ 0.35
CKAP4-202ENST00000552828 EN1Q05925 392 aaPredicted RBP17.21■□□□□ 0.35
CKAP4-202ENST00000552828 CHRNA2Q15822 529 aa17.21■□□□□ 0.35
CKAP4-202ENST00000552828 FAM182BQ5T319 152 aa17.21■□□□□ 0.35
CKAP4-202ENST00000552828 ZC3H6P61129 1189 aaKnown RBP17.2■□□□□ 0.34
CKAP4-202ENST00000552828 NBPF1Q3BBV0 1214 aa17.2■□□□□ 0.34
CKAP4-202ENST00000552828 KIAA1210Q9ULL0 1709 aa17.2■□□□□ 0.34
CKAP4-202ENST00000552828 LRP5O75197 1615 aa17.2■□□□□ 0.34
CKAP4-202ENST00000552828 TOPAZ1Q8N9V7 1692 aa17.2■□□□□ 0.34
CKAP4-202ENST00000552828 CPDO75976 1380 aa17.19■□□□□ 0.34
CKAP4-202ENST00000552828 NUTM2GQ5VZR2 741 aa17.19■□□□□ 0.34
CKAP4-202ENST00000552828 FAM196AQ6ZSG2 479 aa17.19■□□□□ 0.34
CKAP4-202ENST00000552828 BARGINQ6ZT62 677 aa17.19■□□□□ 0.34
CKAP4-202ENST00000552828 USP19O94966 1318 aa17.19■□□□□ 0.34
CKAP4-202ENST00000552828 PHRF1Q9P1Y6 1649 aaKnown RBP17.18■□□□□ 0.34
CKAP4-202ENST00000552828 PSDA5PKW4 1024 aaPredicted RBP17.18■□□□□ 0.34
CKAP4-202ENST00000552828 ABTB2Q8N961 1025 aa17.18■□□□□ 0.34
CKAP4-202ENST00000552828 STRN4Q9NRL3 753 aa17.18■□□□□ 0.34
CKAP4-202ENST00000552828 RGPD1P0DJD0 1748 aa17.18■□□□□ 0.34
CKAP4-202ENST00000552828 SSH2Q76I76 1423 aa17.17■□□□□ 0.34
CKAP4-202ENST00000552828 CAMKK2Q96RR4 588 aa17.16■□□□□ 0.34
CKAP4-202ENST00000552828 BRD4O60885 1362 aaPredicted RBP17.15■□□□□ 0.34
CKAP4-202ENST00000552828 EVA1CP58658 441 aa17.15■□□□□ 0.34
CKAP4-202ENST00000552828 CAMTA1Q9Y6Y1 1673 aa17.15■□□□□ 0.34
CKAP4-202ENST00000552828 CENPJQ9HC77 1338 aaPredicted RBP17.15■□□□□ 0.34
CKAP4-202ENST00000552828 GCP02774 474 aa17.14■□□□□ 0.33
CKAP4-202ENST00000552828 EZH2Q15910 746 aaKnown RBP17.14■□□□□ 0.33
CKAP4-202ENST00000552828 LARP1Q6PKG0 1096 aaKnown RBP17.14■□□□□ 0.33
CKAP4-202ENST00000552828 NLRP13Q86W25 1043 aa17.14■□□□□ 0.33
CKAP4-202ENST00000552828 NRKQ7Z2Y5 1582 aa17.14■□□□□ 0.33
CKAP4-202ENST00000552828 PARD3Q8TEW0 1356 aa17.14■□□□□ 0.33
CKAP4-202ENST00000552828 PPIP5K1Q6PFW1 1433 aa17.13■□□□□ 0.33
CKAP4-202ENST00000552828 TRIM37O94972 964 aa17.13■□□□□ 0.33
CKAP4-202ENST00000552828 SRPK2P78362 688 aaKnown RBP17.13■□□□□ 0.33
CKAP4-202ENST00000552828 TCP11L2Q8N4U5 519 aa17.13■□□□□ 0.33
CKAP4-202ENST00000552828 USP35Q9P2H5 1018 aa17.13■□□□□ 0.33
CKAP4-202ENST00000552828 THRAP3Q9Y2W1 955 aaKnown RBP17.13■□□□□ 0.33
CKAP4-202ENST00000552828 TNS1Q9HBL0 1735 aaKnown RBP17.13■□□□□ 0.33
CKAP4-202ENST00000552828 PDE3BQ13370 1112 aa17.12■□□□□ 0.33
CKAP4-202ENST00000552828 R3HDM1Q15032 1099 aaKnown RBP17.12■□□□□ 0.33
CKAP4-202ENST00000552828 CABP2Q9NPB3 220 aa17.12■□□□□ 0.33
CKAP4-202ENST00000552828 LMO7Q8WWI1 1683 aa17.12■□□□□ 0.33
CKAP4-202ENST00000552828 APBA3O96018 575 aa17.1■□□□□ 0.33
CKAP4-202ENST00000552828 CABP1Q9NZU7 370 aa17.09■□□□□ 0.33
CKAP4-202ENST00000552828 COL5A2P05997 1499 aaPredicted RBP17.09■□□□□ 0.33
CKAP4-202ENST00000552828 USP6P35125 1406 aa17.08■□□□□ 0.32
CKAP4-202ENST00000552828 AATKQ6ZMQ8 1374 aa17.07■□□□□ 0.32
CKAP4-202ENST00000552828 C11orf95C9JLR9 678 aaPredicted RBP17.07■□□□□ 0.32
CKAP4-202ENST00000552828 TRIM26Q12899 539 aaPredicted RBP17.07■□□□□ 0.32
CKAP4-202ENST00000552828 L3MBTL2Q969R5 705 aa17.07■□□□□ 0.32
CKAP4-202ENST00000552828 NLRP6P59044 892 aa17.06■□□□□ 0.32
CKAP4-202ENST00000552828 CRB1P82279 1406 aa17.05■□□□□ 0.32
CKAP4-202ENST00000552828 SLIT3O75094 1523 aa17.05■□□□□ 0.32
CKAP4-202ENST00000552828 EVC2Q86UK5 1308 aa17.04■□□□□ 0.32
CKAP4-202ENST00000552828 QRICH2Q9H0J4 1663 aa17.03■□□□□ 0.32
CKAP4-202ENST00000552828 ZNF692Q9BU19 519 aaPredicted RBP17.02■□□□□ 0.32
CKAP4-202ENST00000552828 PARP4Q9UKK3 1724 aaKnown RBP17.01■□□□□ 0.31
CKAP4-202ENST00000552828 NBPF14Q5TI25 921 aa17.01■□□□□ 0.31
CKAP4-202ENST00000552828 RREB1Q92766 1687 aa17.01■□□□□ 0.31
CKAP4-202ENST00000552828 ARHGEF25Q86VW2 580 aa17■□□□□ 0.31
CKAP4-202ENST00000552828 AXIN2Q9Y2T1 843 aa17■□□□□ 0.31
CKAP4-202ENST00000552828 TTC21BQ7Z4L5 1316 aa16.99■□□□□ 0.31
CKAP4-202ENST00000552828 OVOS2A0A0G2JMS6 1433 aa16.99■□□□□ 0.31
CKAP4-202ENST00000552828 OVOS2A0A0J9YW53 1432 aa16.99■□□□□ 0.31
CKAP4-202ENST00000552828 OVOS2Q6IE36 1432 aa16.99■□□□□ 0.31
CKAP4-202ENST00000552828 PLSCR1O15162 318 aa16.99■□□□□ 0.31
CKAP4-202ENST00000552828 WDR17Q8IZU2 1322 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 PIK3C2AO00443 1686 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 DDB1Q16531 1140 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 TOM1L2Q6ZVM7 507 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 KCNH5Q8NCM2 988 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 SIN3AQ96ST3 1273 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 CDCA7Q9BWT1 371 aaPredicted RBP16.98■□□□□ 0.31
CKAP4-202ENST00000552828 PEAK1Q9H792 1746 aa16.98■□□□□ 0.31
CKAP4-202ENST00000552828 TTC21AQ8NDW8 1320 aa16.97■□□□□ 0.31
CKAP4-202ENST00000552828 COL18A1P39060 1754 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms