RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 KRTAP9-6A0A140TA67 174 aa5.61□□□□□ -1.51
LIMA1-209ENST00000552008 VARSP26640 1264 aaKnown RBP5.61□□□□□ -1.51
LIMA1-209ENST00000552008 USP46P62068 366 aa5.61□□□□□ -1.51
LIMA1-209ENST00000552008 BMP2P12643 396 aa5.6□□□□□ -1.51
LIMA1-209ENST00000552008 RNFT1Q5M7Z0 435 aa5.6□□□□□ -1.51
LIMA1-209ENST00000552008 PAXIP1Q6ZW49 1069 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-209ENST00000552008 SYMPKQ92797 1274 aaKnown RBP5.6□□□□□ -1.51
LIMA1-209ENST00000552008 ZFAND3Q9H8U3 227 aa5.6□□□□□ -1.51
LIMA1-209ENST00000552008 DNMT3LQ9UJW3 386 aa5.6□□□□□ -1.51
LIMA1-209ENST00000552008 HOXA2O43364 376 aa5.59□□□□□ -1.51
LIMA1-209ENST00000552008 UPP2O95045 317 aa5.59□□□□□ -1.51
LIMA1-209ENST00000552008 ZIC2O95409 532 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-209ENST00000552008 CCNYL3P0C7X3 344 aa5.59□□□□□ -1.51
LIMA1-209ENST00000552008 SLURP2P0DP57 97 aa5.59□□□□□ -1.51
LIMA1-209ENST00000552008 BAP1Q92560 729 aa5.59□□□□□ -1.51
LIMA1-209ENST00000552008 UNC93B1Q9H1C4 597 aa5.59□□□□□ -1.51
LIMA1-209ENST00000552008 SOS2Q07890 1332 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-209ENST00000552008 SEMA3EO15041 775 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 GUCA2AQ02747 115 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 PLA2G4EQ3MJ16 856 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 RETREG3Q86VR2 466 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 LINC00528Q8N1L1 170 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 ITPKCQ96DU7 683 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 SPOCK3Q9BQ16 436 aa5.58□□□□□ -1.52
LIMA1-209ENST00000552008 GPR37O15354 613 aa5.57□□□□□ -1.52
LIMA1-209ENST00000552008 MS4A1P11836 297 aa5.57□□□□□ -1.52
LIMA1-209ENST00000552008 RBM26Q5T8P6 1007 aaKnown RBP5.57□□□□□ -1.52
LIMA1-209ENST00000552008 KRTAP1-3Q8IUG1 177 aa5.57□□□□□ -1.52
LIMA1-209ENST00000552008 Q8N3U1 123 aa5.57□□□□□ -1.52
LIMA1-209ENST00000552008 ZNF511Q8NB15 262 aa5.57□□□□□ -1.52
LIMA1-209ENST00000552008 NANOS1Q8WY41 292 aaKnown RBP5.57□□□□□ -1.52
LIMA1-209ENST00000552008 PTSQ03393 145 aa5.56□□□□□ -1.52
LIMA1-209ENST00000552008 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.56□□□□□ -1.52
LIMA1-209ENST00000552008 MEIOBQ8N635 442 aa5.55□□□□□ -1.52
LIMA1-209ENST00000552008 GALNT6Q8NCL4 622 aa5.55□□□□□ -1.52
LIMA1-209ENST00000552008 FAM174AQ8TBP5 190 aa5.55□□□□□ -1.52
LIMA1-209ENST00000552008 EVA1BQ9NVM1 165 aa5.55□□□□□ -1.52
LIMA1-209ENST00000552008 K7ELQ4 463 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-209ENST00000552008 ARID5BQ14865 1188 aa5.54□□□□□ -1.52
LIMA1-209ENST00000552008 PTPRNQ16849 979 aa5.54□□□□□ -1.52
LIMA1-209ENST00000552008 PROCP04070 461 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 ITGB2P05107 769 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 NR3C2P08235 984 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 MAP3K10Q02779 954 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 KCNH2Q12809 1159 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 CCDC155Q8N6L0 562 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 DCAF5Q96JK2 942 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 CDK15Q96Q40 435 aa5.53□□□□□ -1.52
LIMA1-209ENST00000552008 NR5A1Q13285 461 aa5.52□□□□□ -1.53
LIMA1-209ENST00000552008 LYPD4Q6UWN0 246 aa5.52□□□□□ -1.53
LIMA1-209ENST00000552008 CDC14CA4D256 554 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 TTLL8A6PVC2 850 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 PHF20L1A8MW92 1017 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 C6orf229H3BNL8 230 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 SPTLC1O15269 473 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 SLC24A1O60721 1099 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 ADAMTS2O95450 1211 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 SV2AQ7L0J3 742 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 VWA5B2Q8N398 1253 aa5.51□□□□□ -1.53
LIMA1-209ENST00000552008 FIGNL2A6NMB9 653 aa5.5□□□□□ -1.53
LIMA1-209ENST00000552008 TSEN34Q9BSV6 310 aaKnown RBP5.5□□□□□ -1.53
LIMA1-209ENST00000552008 ITGA6P23229 1130 aa5.49□□□□□ -1.53
LIMA1-209ENST00000552008 SMYD5Q6GMV2 418 aa5.49□□□□□ -1.53
LIMA1-209ENST00000552008 P3H3Q8IVL6 736 aa5.49□□□□□ -1.53
LIMA1-209ENST00000552008 ENAMQ9NRM1 1142 aa5.49□□□□□ -1.53
LIMA1-209ENST00000552008 SLC35F4A4IF30 521 aa5.48□□□□□ -1.53
LIMA1-209ENST00000552008 CELA2BP08218 269 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-209ENST00000552008 FDX1P10109 184 aa5.48□□□□□ -1.53
LIMA1-209ENST00000552008 GRM5P41594 1212 aa5.48□□□□□ -1.53
LIMA1-209ENST00000552008 MDM2Q00987 491 aaPredicted RBP5.48□□□□□ -1.53
LIMA1-209ENST00000552008 NUTM1Q86Y26 1132 aa5.48□□□□□ -1.53
LIMA1-209ENST00000552008 FOXJ1Q92949 421 aa5.48□□□□□ -1.53
LIMA1-209ENST00000552008 CNTNAP5Q8WYK1 1306 aa5.48□□□□□ -1.53
LIMA1-209ENST00000552008 TESPA1A2RU30 521 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-209ENST00000552008 SRSF11Q05519 484 aaKnown RBP5.47□□□□□ -1.53
LIMA1-209ENST00000552008 LCE3BQ5TA77 95 aa5.47□□□□□ -1.53
LIMA1-209ENST00000552008 PCDHGC3Q9UN70 934 aa5.47□□□□□ -1.53
LIMA1-209ENST00000552008 BAG6P46379 1132 aa5.46□□□□□ -1.54
LIMA1-209ENST00000552008 PODNQ7Z5L7 613 aa5.46□□□□□ -1.54
LIMA1-209ENST00000552008 SH3RF1Q7Z6J0 888 aa5.46□□□□□ -1.54
LIMA1-209ENST00000552008 BEND7Q8N7W2 519 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-209ENST00000552008 CTHP32929 405 aa5.45□□□□□ -1.54
LIMA1-209ENST00000552008 PRR7Q8TB68 274 aa5.45□□□□□ -1.54
LIMA1-209ENST00000552008 FSHRP23945 695 aa5.44□□□□□ -1.54
LIMA1-209ENST00000552008 AGERQ15109 404 aa5.44□□□□□ -1.54
LIMA1-209ENST00000552008 FURINP09958 794 aa5.43□□□□□ -1.54
LIMA1-209ENST00000552008 C4orf48Q5BLP8 95 aa5.43□□□□□ -1.54
LIMA1-209ENST00000552008 DESI1Q6ICB0 168 aa5.43□□□□□ -1.54
LIMA1-209ENST00000552008 GPIHBP1Q8IV16 184 aa5.43□□□□□ -1.54
LIMA1-209ENST00000552008 EMILIN1Q9Y6C2 1016 aa5.43□□□□□ -1.54
LIMA1-209ENST00000552008 SPINT1O43278 529 aa5.42□□□□□ -1.54
LIMA1-209ENST00000552008 GAS6Q14393 721 aa5.42□□□□□ -1.54
LIMA1-209ENST00000552008 TSHZ2Q9NRE2 1034 aa5.42□□□□□ -1.54
LIMA1-209ENST00000552008 MAP2K5Q13163 448 aa5.41□□□□□ -1.54
LIMA1-209ENST00000552008 BPHLQ86WA6 291 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-209ENST00000552008 NEDD1Q8NHV4 660 aa5.41□□□□□ -1.54
LIMA1-209ENST00000552008 KRTAP4-12Q9BQ66 201 aa5.41□□□□□ -1.54
LIMA1-209ENST00000552008 FAM217BQ9NTX9 383 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-209ENST00000552008 CCDC116Q8IYX3 515 aa5.4□□□□□ -1.54
LIMA1-209ENST00000552008 GPCPD1Q9NPB8 672 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms