RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	SVOP	Q8N4V2	548 aa		5.64	□□□□□ -1.51
PTCH1-223	ENST00000551623	GPR161	Q8N6U8	529 aa	Known RBP	5.64	□□□□□ -1.51
PTCH1-223	ENST00000551623	BAP1	Q92560	729 aa		5.64	□□□□□ -1.51
PTCH1-223	ENST00000551623	TESPA1	A2RU30	521 aa	Predicted RBP	5.63	□□□□□ -1.51
PTCH1-223	ENST00000551623	SMYD5	Q6GMV2	418 aa		5.63	□□□□□ -1.51
PTCH1-223	ENST00000551623	KANK3	Q6NY19	840 aa		5.63	□□□□□ -1.51
PTCH1-223	ENST00000551623	ZNF511	Q8NB15	262 aa		5.63	□□□□□ -1.51
PTCH1-223	ENST00000551623	ZIC2	O95409	532 aa	Predicted RBP	5.62	□□□□□ -1.51
PTCH1-223	ENST00000551623	MS4A1	P11836	297 aa		5.62	□□□□□ -1.51
PTCH1-223	ENST00000551623	COL25A1	Q9BXS0	654 aa	Predicted RBP	5.62	□□□□□ -1.51
PTCH1-223	ENST00000551623	KRTAP4-8	Q9BYQ9	185 aa		5.62	□□□□□ -1.51
PTCH1-223	ENST00000551623	ZFAND3	Q9H8U3	227 aa		5.62	□□□□□ -1.51
PTCH1-223	ENST00000551623	EVA1B	Q9NVM1	165 aa		5.62	□□□□□ -1.51
PTCH1-223	ENST00000551623	BMP2	P12643	396 aa		5.61	□□□□□ -1.51
PTCH1-223	ENST00000551623	PTPRN	Q16849	979 aa		5.61	□□□□□ -1.51
PTCH1-223	ENST00000551623	ITPKC	Q96DU7	683 aa		5.61	□□□□□ -1.51
PTCH1-223	ENST00000551623	TSHZ2	Q9NRE2	1034 aa		5.61	□□□□□ -1.51
PTCH1-223	ENST00000551623	DNMT3L	Q9UJW3	386 aa		5.61	□□□□□ -1.51
PTCH1-223	ENST00000551623	SOS2	Q07890	1332 aa	Predicted RBP	5.6	□□□□□ -1.51
PTCH1-223	ENST00000551623	ARHGEF15	O94989	841 aa		5.6	□□□□□ -1.51
PTCH1-223	ENST00000551623	UPP2	O95045	317 aa		5.6	□□□□□ -1.51
PTCH1-223	ENST00000551623	KCNH2	Q12809	1159 aa		5.6	□□□□□ -1.51
PTCH1-223	ENST00000551623	LINC00528	Q8N1L1	170 aa		5.6	□□□□□ -1.51
PTCH1-223	ENST00000551623	ADAM23	O75077	832 aa		5.59	□□□□□ -1.51
PTCH1-223	ENST00000551623	MARS	P56192	900 aa	Known RBP	5.59	□□□□□ -1.51
PTCH1-223	ENST00000551623	FAM174A	Q8TBP5	190 aa		5.59	□□□□□ -1.51
PTCH1-223	ENST00000551623	WHAMM	Q8TF30	809 aa		5.59	□□□□□ -1.51
PTCH1-223	ENST00000551623	SCARF2	Q96GP6	870 aa	Predicted RBP	5.59	□□□□□ -1.51
PTCH1-223	ENST00000551623	CDK15	Q96Q40	435 aa		5.59	□□□□□ -1.51
PTCH1-223	ENST00000551623	C6orf229	H3BNL8	230 aa		5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	NR3C2	P08235	984 aa		5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	SLURP2	P0DP57	97 aa		5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	MDM2	Q00987	491 aa	Predicted RBP	5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	RNFT1	Q5M7Z0	435 aa		5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	MEIOB	Q8N635	442 aa		5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	NANOS1	Q8WY41	292 aa	Known RBP	5.58	□□□□□ -1.52
PTCH1-223	ENST00000551623	FDX1	P10109	184 aa		5.57	□□□□□ -1.52
PTCH1-223	ENST00000551623	NR5A1	Q13285	461 aa		5.57	□□□□□ -1.52
PTCH1-223	ENST00000551623	ARID5B	Q14865	1188 aa		5.57	□□□□□ -1.52
PTCH1-223	ENST00000551623	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	5.57	□□□□□ -1.52
PTCH1-223	ENST00000551623	GPIHBP1	Q8IV16	184 aa		5.57	□□□□□ -1.52
PTCH1-223	ENST00000551623	PCDHGC3	Q9UN70	934 aa		5.57	□□□□□ -1.52
PTCH1-223	ENST00000551623	PTS	Q03393	145 aa		5.56	□□□□□ -1.52
PTCH1-223	ENST00000551623	NUTM1	Q86Y26	1132 aa		5.56	□□□□□ -1.52
PTCH1-223	ENST00000551623	MSTN	O14793	375 aa		5.55	□□□□□ -1.52
PTCH1-223	ENST00000551623	RTN4	Q9NQC3	1192 aa	Known RBP	5.55	□□□□□ -1.52
PTCH1-223	ENST00000551623	TTLL8	A6PVC2	850 aa		5.54	□□□□□ -1.52
PTCH1-223	ENST00000551623	SPTLC1	O15269	473 aa		5.54	□□□□□ -1.52
PTCH1-223	ENST00000551623	MAP2K5	Q13163	448 aa		5.54	□□□□□ -1.52
PTCH1-223	ENST00000551623	PLA2G4E	Q3MJ16	856 aa		5.54	□□□□□ -1.52
PTCH1-223	ENST00000551623	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	GRM5	P41594	1212 aa		5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	DESI1	Q6ICB0	168 aa		5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	CCDC155	Q8N6L0	562 aa		5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	FOXJ1	Q92949	421 aa		5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	SPOCK3	Q9BQ16	436 aa		5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	TSEN34	Q9BSV6	310 aa	Known RBP	5.53	□□□□□ -1.52
PTCH1-223	ENST00000551623	PRR7	Q8TB68	274 aa		5.52	□□□□□ -1.53
PTCH1-223	ENST00000551623	PSMG3-AS1	Q96PY0	264 aa		5.52	□□□□□ -1.53
PTCH1-223	ENST00000551623	GPCPD1	Q9NPB8	672 aa		5.52	□□□□□ -1.53
PTCH1-223	ENST00000551623	FAM217B	Q9NTX9	383 aa	Predicted RBP	5.52	□□□□□ -1.53
PTCH1-223	ENST00000551623	RB1CC1	Q8TDY2	1594 aa		5.51	□□□□□ -1.53
PTCH1-223	ENST00000551623	CDC14C	A4D256	554 aa		5.51	□□□□□ -1.53
PTCH1-223	ENST00000551623	FIGNL2	A6NMB9	653 aa		5.51	□□□□□ -1.53
PTCH1-223	ENST00000551623	IRF6	O14896	467 aa		5.51	□□□□□ -1.53
PTCH1-223	ENST00000551623	CTH	P32929	405 aa		5.51	□□□□□ -1.53
PTCH1-223	ENST00000551623	KRTAP9-2	Q9BYQ4	174 aa		5.51	□□□□□ -1.53
PTCH1-223	ENST00000551623	SLC35F4	A4IF30	521 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	ADAMTS2	O95450	1211 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	ITGB2	P05107	769 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	ITGA6	P23229	1130 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	MAP3K10	Q02779	954 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	LYPD4	Q6UWN0	246 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	SV2A	Q7L0J3	742 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	VWA5B2	Q8N398	1253 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	DCAF5	Q96JK2	942 aa		5.5	□□□□□ -1.53
PTCH1-223	ENST00000551623	KRTAP9-6	A0A140TA67	174 aa		5.49	□□□□□ -1.53
PTCH1-223	ENST00000551623	PROC	P04070	461 aa		5.49	□□□□□ -1.53
PTCH1-223	ENST00000551623	FSHR	P23945	695 aa		5.49	□□□□□ -1.53
PTCH1-223	ENST00000551623	CLCN1	P35523	988 aa		5.49	□□□□□ -1.53
PTCH1-223	ENST00000551623	MTMR2	Q13614	643 aa		5.49	□□□□□ -1.53
PTCH1-223	ENST00000551623	C4orf48	Q5BLP8	95 aa		5.49	□□□□□ -1.53
PTCH1-223	ENST00000551623	SPDYE5	A6NIY4	337 aa		5.48	□□□□□ -1.53
PTCH1-223	ENST00000551623	PHF20L1	A8MW92	1017 aa		5.48	□□□□□ -1.53
PTCH1-223	ENST00000551623	NDUFV2	P19404	249 aa		5.48	□□□□□ -1.53
PTCH1-223	ENST00000551623	AGER	Q15109	404 aa		5.48	□□□□□ -1.53
PTCH1-223	ENST00000551623		Q8N3U1	123 aa		5.48	□□□□□ -1.53
PTCH1-223	ENST00000551623	GALNT6	Q8NCL4	622 aa		5.48	□□□□□ -1.53
PTCH1-223	ENST00000551623		K7ELQ4	463 aa	Predicted RBP	5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	CELA2B	P08218	269 aa	Predicted RBP	5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	LYPD8	Q6UX82	237 aa		5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	BPHL	Q86WA6	291 aa	Predicted RBP	5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	ENAM	Q9NRM1	1142 aa		5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	MAP10	Q9P2G4	905 aa		5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	EMILIN1	Q9Y6C2	1016 aa		5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	MINK1	Q8N4C8	1332 aa	Predicted RBP	5.47	□□□□□ -1.53
PTCH1-223	ENST00000551623	MOXD2P	A6NHM9	499 aa		5.46	□□□□□ -1.54
PTCH1-223	ENST00000551623	SPINT1	O43278	529 aa		5.46	□□□□□ -1.54
PTCH1-223	ENST00000551623	F12	P00748	615 aa	Predicted RBP	5.46	□□□□□ -1.54
PTCH1-223	ENST00000551623	SRSF11	Q05519	484 aa	Known RBP	5.46	□□□□□ -1.54

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms