RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 NRAPQ86VF7 1730 aa21.03■□□□□ 0.96
LINC00661-203ENST00000549131 PPIP5K1Q6PFW1 1433 aa21.03■□□□□ 0.96
LINC00661-203ENST00000549131 COL14A1Q05707 1796 aaKnown RBP21.02■□□□□ 0.96
LINC00661-203ENST00000549131 RALGAPBQ86X10 1494 aa21.01■□□□□ 0.95
LINC00661-203ENST00000549131 POLR3AO14802 1390 aaPredicted RBP21.01■□□□□ 0.95
LINC00661-203ENST00000549131 GLI3P10071 1580 aa21.01■□□□□ 0.95
LINC00661-203ENST00000549131 NBPF8Q3BBV2 869 aa21■□□□□ 0.95
LINC00661-203ENST00000549131 CCDC61Q9Y6R9 512 aa21■□□□□ 0.95
LINC00661-203ENST00000549131 CABP2Q9NPB3 220 aa20.99■□□□□ 0.95
LINC00661-203ENST00000549131 ACEP12821 1306 aa20.99■□□□□ 0.95
LINC00661-203ENST00000549131 UNC5CLQ8IV45 518 aa20.97■□□□□ 0.95
LINC00661-203ENST00000549131 AKAP12Q02952 1782 aa20.97■□□□□ 0.95
LINC00661-203ENST00000549131 BRWD3Q6RI45 1802 aa20.96■□□□□ 0.95
LINC00661-203ENST00000549131 NRKQ7Z2Y5 1582 aa20.96■□□□□ 0.95
LINC00661-203ENST00000549131 EVC2Q86UK5 1308 aa20.96■□□□□ 0.95
LINC00661-203ENST00000549131 PLEKHG3A1L390 1219 aa20.95■□□□□ 0.94
LINC00661-203ENST00000549131 UPF1Q92900 1129 aaKnown RBP eCLIP20.93■□□□□ 0.94
LINC00661-203ENST00000549131 GJD4Q96KN9 370 aaPredicted RBP20.93■□□□□ 0.94
LINC00661-203ENST00000549131 CARD11Q9BXL7 1154 aa20.93■□□□□ 0.94
LINC00661-203ENST00000549131 NUTM2GQ5VZR2 741 aa20.91■□□□□ 0.94
LINC00661-203ENST00000549131 ATAD2Q6PL18 1390 aa20.91■□□□□ 0.94
LINC00661-203ENST00000549131 PIK3C2AO00443 1686 aa20.9■□□□□ 0.94
LINC00661-203ENST00000549131 FAM83GA6ND36 823 aa20.9■□□□□ 0.94
LINC00661-203ENST00000549131 CCDC9Q9Y3X0 531 aaKnown RBP20.9■□□□□ 0.94
LINC00661-203ENST00000549131 MON2Q7Z3U7 1717 aa20.9■□□□□ 0.94
LINC00661-203ENST00000549131 USP6P35125 1406 aa20.89■□□□□ 0.94
LINC00661-203ENST00000549131 SBNO2Q9Y2G9 1366 aa20.89■□□□□ 0.93
LINC00661-203ENST00000549131 EP400Q96L91 3159 aa20.89■□□□□ 0.93
LINC00661-203ENST00000549131 VPS72Q15906 364 aa20.88■□□□□ 0.93
LINC00661-203ENST00000549131 PRDM11Q9NQV5 511 aa20.88■□□□□ 0.93
LINC00661-203ENST00000549131 BTG4Q9NY30 223 aa20.88■□□□□ 0.93
LINC00661-203ENST00000549131 CABP1Q9NZU7 370 aa20.88■□□□□ 0.93
LINC00661-203ENST00000549131 KIAA0232Q92628 1395 aa20.87■□□□□ 0.93
LINC00661-203ENST00000549131 ABTB2Q8N961 1025 aa20.87■□□□□ 0.93
LINC00661-203ENST00000549131 BRD4O60885 1362 aaPredicted RBP20.86■□□□□ 0.93
LINC00661-203ENST00000549131 LMO7Q8WWI1 1683 aa20.84■□□□□ 0.93
LINC00661-203ENST00000549131 USP19O94966 1318 aa20.83■□□□□ 0.93
LINC00661-203ENST00000549131 ZC3H6P61129 1189 aaKnown RBP20.82■□□□□ 0.92
LINC00661-203ENST00000549131 CHRNA2Q15822 529 aa20.82■□□□□ 0.92
LINC00661-203ENST00000549131 SLIT3O75094 1523 aa20.82■□□□□ 0.92
LINC00661-203ENST00000549131 A0A0G2JS52 829 aa20.81■□□□□ 0.92
LINC00661-203ENST00000549131 MYT1Q01538 1121 aa20.81■□□□□ 0.92
LINC00661-203ENST00000549131 NLRP13Q86W25 1043 aa20.81■□□□□ 0.92
LINC00661-203ENST00000549131 PCGF6Q9BYE7 350 aa20.81■□□□□ 0.92
LINC00661-203ENST00000549131 THSD7AQ9UPZ6 1657 aa20.8■□□□□ 0.92
LINC00661-203ENST00000549131 SSH2Q76I76 1423 aa20.8■□□□□ 0.92
LINC00661-203ENST00000549131 SEPT12Q8IYM1 358 aa20.79■□□□□ 0.92
LINC00661-203ENST00000549131 CPDO75976 1380 aa20.78■□□□□ 0.92
LINC00661-203ENST00000549131 KTN1Q86UP2 1357 aaKnown RBP20.78■□□□□ 0.92
LINC00661-203ENST00000549131 CPSF1Q10570 1443 aaKnown RBP20.78■□□□□ 0.92
LINC00661-203ENST00000549131 CAMTA1Q9Y6Y1 1673 aa20.77■□□□□ 0.92
LINC00661-203ENST00000549131 NLRP6P59044 892 aa20.77■□□□□ 0.92
LINC00661-203ENST00000549131 STRN4Q9NRL3 753 aa20.77■□□□□ 0.92
LINC00661-203ENST00000549131 USP54Q70EL1 1684 aa20.77■□□□□ 0.91
LINC00661-203ENST00000549131 FAM98CQ17RN3 349 aaKnown RBP20.76■□□□□ 0.91
LINC00661-203ENST00000549131 SPATA31A5Q5VU36 1347 aa20.76■□□□□ 0.91
LINC00661-203ENST00000549131 SPATA31A7Q8IWB4 1347 aa20.76■□□□□ 0.91
LINC00661-203ENST00000549131 RGPD5Q99666 1765 aa20.75■□□□□ 0.91
LINC00661-203ENST00000549131 ZNF692Q9BU19 519 aaPredicted RBP20.75■□□□□ 0.91
LINC00661-203ENST00000549131 TTC21BQ7Z4L5 1316 aa20.75■□□□□ 0.91
LINC00661-203ENST00000549131 CD163L1Q9NR16 1453 aa20.75■□□□□ 0.91
LINC00661-203ENST00000549131 ZBTB7CA1YPR0 619 aa20.74■□□□□ 0.91
LINC00661-203ENST00000549131 GCP02774 474 aa20.74■□□□□ 0.91
LINC00661-203ENST00000549131 TTC21AQ8NDW8 1320 aa20.74■□□□□ 0.91
LINC00661-203ENST00000549131 CLSPNQ9HAW4 1339 aa20.74■□□□□ 0.91
LINC00661-203ENST00000549131 USP47Q96K76 1375 aa20.73■□□□□ 0.91
LINC00661-203ENST00000549131 LTN1O94822 1766 aa20.73■□□□□ 0.91
LINC00661-203ENST00000549131 COL18A1P39060 1754 aa20.73■□□□□ 0.91
LINC00661-203ENST00000549131 TMC1Q8TDI8 760 aa20.73■□□□□ 0.91
LINC00661-203ENST00000549131 WNK3Q9BYP7 1800 aa20.73■□□□□ 0.91
LINC00661-203ENST00000549131 ST20-MTHFSA0A0A6YYL1 179 aa20.72■□□□□ 0.91
LINC00661-203ENST00000549131 ONECUT3O60422 494 aaPredicted RBP20.72■□□□□ 0.91
LINC00661-203ENST00000549131 COL5A2P05997 1499 aaPredicted RBP20.72■□□□□ 0.91
LINC00661-203ENST00000549131 RGPD1P0DJD0 1748 aa20.71■□□□□ 0.91
LINC00661-203ENST00000549131 KRT27Q7Z3Y8 459 aa20.71■□□□□ 0.91
LINC00661-203ENST00000549131 SPATA31A1Q5TZJ5 1347 aa20.71■□□□□ 0.91
LINC00661-203ENST00000549131 NFAT5O94916 1531 aa20.7■□□□□ 0.9
LINC00661-203ENST00000549131 EVA1CP58658 441 aa20.7■□□□□ 0.9
LINC00661-203ENST00000549131 TESK2Q96S53 571 aa20.7■□□□□ 0.9
LINC00661-203ENST00000549131 BLMP54132 1417 aaPredicted RBP20.7■□□□□ 0.9
LINC00661-203ENST00000549131 HDGFL2Q7Z4V5 671 aaPredicted RBP20.69■□□□□ 0.9
LINC00661-203ENST00000549131 USP35Q9P2H5 1018 aa20.69■□□□□ 0.9
LINC00661-203ENST00000549131 A0A1W2PP64 1363 aa20.69■□□□□ 0.9
LINC00661-203ENST00000549131 SOX12O15370 315 aa20.68■□□□□ 0.9
LINC00661-203ENST00000549131 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.68■□□□□ 0.9
LINC00661-203ENST00000549131 EDC4Q6P2E9 1401 aaKnown RBP20.68■□□□□ 0.9
LINC00661-203ENST00000549131 PARP4Q9UKK3 1724 aaKnown RBP20.67■□□□□ 0.9
LINC00661-203ENST00000549131 CCDC125Q86Z20 511 aa20.67■□□□□ 0.9
LINC00661-203ENST00000549131 AATKQ6ZMQ8 1374 aa20.67■□□□□ 0.9
LINC00661-203ENST00000549131 NINLQ9Y2I6 1382 aa20.67■□□□□ 0.9
LINC00661-203ENST00000549131 LARP1Q6PKG0 1096 aaKnown RBP20.66■□□□□ 0.9
LINC00661-203ENST00000549131 SLC12A5Q9H2X9 1139 aa20.66■□□□□ 0.9
LINC00661-203ENST00000549131 TERF2IPQ9NYB0 399 aa20.66■□□□□ 0.9
LINC00661-203ENST00000549131 TIMELESSQ9UNS1 1208 aa20.66■□□□□ 0.9
LINC00661-203ENST00000549131 TNS1Q9HBL0 1735 aaKnown RBP20.66■□□□□ 0.9
LINC00661-203ENST00000549131 ABCC6O95255 1503 aa20.65■□□□□ 0.9
LINC00661-203ENST00000549131 KCNH5Q8NCM2 988 aa20.65■□□□□ 0.9
LINC00661-203ENST00000549131 CCER1Q8TC90 406 aaPredicted RBP20.65■□□□□ 0.9
LINC00661-203ENST00000549131 MYOM1P52179 1685 aa20.64■□□□□ 0.9
LINC00661-203ENST00000549131 CRB1P82279 1406 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms