RNA–Protein interactions for RNA: ENST00000548379.5

PTCH1-216, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-216ENST00000548379 PNMA1Q8ND90 353 aa7.86□□□□□ -1.15
PTCH1-216ENST00000548379 CCDC97Q96F63 343 aaPredicted RBP7.86□□□□□ -1.15
PTCH1-216ENST00000548379 NUDT12Q9BQG2 462 aa7.86□□□□□ -1.15
PTCH1-216ENST00000548379 KCNH2Q12809 1159 aa7.85□□□□□ -1.15
PTCH1-216ENST00000548379 HDGFL1Q5TGJ6 251 aa7.85□□□□□ -1.15
PTCH1-216ENST00000548379 CALR3Q96L12 384 aaKnown RBP7.85□□□□□ -1.15
PTCH1-216ENST00000548379 SOX11P35716 441 aa7.84□□□□□ -1.15
PTCH1-216ENST00000548379 NR1H3Q13133 447 aa7.84□□□□□ -1.15
PTCH1-216ENST00000548379 GPKOWQ92917 476 aaPredicted RBP eCLIP7.83□□□□□ -1.16
PTCH1-216ENST00000548379 ZBBXA8MT70 800 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 FBXO45P0C2W1 286 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 CTHP32929 405 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 PDXDC2PQ6P474 469 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 ARMC2Q8NEN0 867 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 SLC6A16Q9GZN6 736 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 GPSM3Q9Y4H4 160 aa7.82□□□□□ -1.16
PTCH1-216ENST00000548379 ITGBL1O95965 494 aaPredicted RBP7.81□□□□□ -1.16
PTCH1-216ENST00000548379 NKX2-3Q8TAU0 364 aa7.81□□□□□ -1.16
PTCH1-216ENST00000548379 OCSTAMPQ9BR26 566 aa7.81□□□□□ -1.16
PTCH1-216ENST00000548379 PTCRAQ6ISU1 281 aaPredicted RBP7.8□□□□□ -1.16
PTCH1-216ENST00000548379 UCN2Q96RP3 112 aa7.8□□□□□ -1.16
PTCH1-216ENST00000548379 EIF4G2P78344 907 aaKnown RBP eCLIP7.79□□□□□ -1.16
PTCH1-216ENST00000548379 SPNS2Q8IVW8 549 aa7.79□□□□□ -1.16
PTCH1-216ENST00000548379 HCSTQ9UBK5 93 aa7.79□□□□□ -1.16
PTCH1-216ENST00000548379 SRPK2P78362 688 aaKnown RBP7.78□□□□□ -1.16
PTCH1-216ENST00000548379 CFAP70Q5T0N1 1121 aa7.78□□□□□ -1.16
PTCH1-216ENST00000548379 NBPF14Q5TI25 921 aa7.78□□□□□ -1.16
PTCH1-216ENST00000548379 PPP1R12CQ9BZL4 782 aa7.78□□□□□ -1.16
PTCH1-216ENST00000548379 UNC93B1Q9H1C4 597 aa7.78□□□□□ -1.16
PTCH1-216ENST00000548379 PPP1R15AO75807 674 aaPredicted RBP7.77□□□□□ -1.17
PTCH1-216ENST00000548379 S1PR4O95977 384 aa7.77□□□□□ -1.17
PTCH1-216ENST00000548379 SH3BP5LQ7L8J4 393 aa7.77□□□□□ -1.17
PTCH1-216ENST00000548379 RNF166Q96A37 237 aaPredicted RBP7.77□□□□□ -1.17
PTCH1-216ENST00000548379 PTK2Q05397 1052 aa7.76□□□□□ -1.17
PTCH1-216ENST00000548379 SEMA3FQ13275 785 aa7.76□□□□□ -1.17
PTCH1-216ENST00000548379 SH3RF1Q7Z6J0 888 aa7.76□□□□□ -1.17
PTCH1-216ENST00000548379 PALM3A6NDB9 673 aaPredicted RBP7.75□□□□□ -1.17
PTCH1-216ENST00000548379 KCNC4Q03721 635 aa7.75□□□□□ -1.17
PTCH1-216ENST00000548379 FCF1Q9Y324 198 aaKnown RBP7.75□□□□□ -1.17
PTCH1-216ENST00000548379 MCCD1P59942 119 aaPredicted RBP7.74□□□□□ -1.17
PTCH1-216ENST00000548379 CCDC24Q8N4L8 307 aa7.74□□□□□ -1.17
PTCH1-216ENST00000548379 NFATC2IPQ8NCF5 419 aa7.73□□□□□ -1.17
PTCH1-216ENST00000548379 PBXIP1Q96AQ6 731 aa7.73□□□□□ -1.17
PTCH1-216ENST00000548379 TFIP11Q9UBB9 837 aaKnown RBP7.73□□□□□ -1.17
PTCH1-216ENST00000548379 ATP9BO43861 1147 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 TBC1D9Q6ZT07 1266 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 PHTF2Q8N3S3 785 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 ADAM32Q8TC27 787 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 ZNF592Q92610 1267 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 ARHGAP9Q9BRR9 750 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 CHIC2Q9UKJ5 165 aa7.72□□□□□ -1.17
PTCH1-216ENST00000548379 MAFBQ9Y5Q3 323 aaPredicted RBP7.72□□□□□ -1.17
PTCH1-216ENST00000548379 RNF223E7ERA6 249 aa7.71□□□□□ -1.18
PTCH1-216ENST00000548379 MMRN1Q13201 1228 aa7.71□□□□□ -1.18
PTCH1-216ENST00000548379 ANKLE1Q8NAG6 615 aa7.71□□□□□ -1.18
PTCH1-216ENST00000548379 ZNF511Q8NB15 262 aa7.71□□□□□ -1.18
PTCH1-216ENST00000548379 BAP1Q92560 729 aa7.71□□□□□ -1.18
PTCH1-216ENST00000548379 PIK3CDO00329 1044 aa7.7□□□□□ -1.18
PTCH1-216ENST00000548379 C4orf48Q5BLP8 95 aa7.7□□□□□ -1.18
PTCH1-216ENST00000548379 FAM174AQ8TBP5 190 aa7.7□□□□□ -1.18
PTCH1-216ENST00000548379 C1QTNF2Q9BXJ5 285 aa7.7□□□□□ -1.18
PTCH1-216ENST00000548379 CEP126Q9P2H0 1117 aa7.7□□□□□ -1.18
PTCH1-216ENST00000548379 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.69□□□□□ -1.18
PTCH1-216ENST00000548379 PPEF1O14829 653 aaPredicted RBP7.69□□□□□ -1.18
PTCH1-216ENST00000548379 LMOD1P29536 600 aaPredicted RBP7.69□□□□□ -1.18
PTCH1-216ENST00000548379 PLA2G2CQ5R387 149 aa7.69□□□□□ -1.18
PTCH1-216ENST00000548379 BPHLQ86WA6 291 aaPredicted RBP7.69□□□□□ -1.18
PTCH1-216ENST00000548379 FOXJ1Q92949 421 aa7.69□□□□□ -1.18
PTCH1-216ENST00000548379 TRAIPQ9BWF2 469 aa7.69□□□□□ -1.18
PTCH1-216ENST00000548379 RFX1P22670 979 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 SH3BP2P78314 561 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 LINC01559Q495D7 138 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 ERFEQ4G0M1 354 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 PLEKHM2Q8IWE5 1019 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 RETREG2Q8NC44 543 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 PCDHB9Q9Y5E1 797 aa7.68□□□□□ -1.18
PTCH1-216ENST00000548379 GGCXP38435 758 aa7.67□□□□□ -1.18
PTCH1-216ENST00000548379 KANK4Q5T7N3 995 aaPredicted RBP7.67□□□□□ -1.18
PTCH1-216ENST00000548379 IFFO2Q5TF58 517 aa7.67□□□□□ -1.18
PTCH1-216ENST00000548379 ZBTB33Q86T24 672 aa7.67□□□□□ -1.18
PTCH1-216ENST00000548379 TRMT44Q8IYL2 757 aaKnown RBP7.67□□□□□ -1.18
PTCH1-216ENST00000548379 ATG7O95352 703 aa7.66□□□□□ -1.18
PTCH1-216ENST00000548379 TRIM32Q13049 653 aa7.66□□□□□ -1.18
PTCH1-216ENST00000548379 PPP1R18Q6NYC8 613 aa7.66□□□□□ -1.18
PTCH1-216ENST00000548379 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.66□□□□□ -1.18
PTCH1-216ENST00000548379 PDIA4P13667 645 aaKnown RBP7.65□□□□□ -1.18
PTCH1-216ENST00000548379 RPIAP49247 311 aa7.65□□□□□ -1.18
PTCH1-216ENST00000548379 TRAF7Q6Q0C0 670 aa7.65□□□□□ -1.18
PTCH1-216ENST00000548379 ACIN1Q9UKV3 1341 aaKnown RBP7.65□□□□□ -1.18
PTCH1-216ENST00000548379 USP17L3A6NCW0 530 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 USP17L4A6NCW7 530 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 USP17L5A8MUK1 530 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 ESPNB1AK53 854 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 LZTS3O60299 673 aaPredicted RBP7.64□□□□□ -1.19
PTCH1-216ENST00000548379 SKIP12755 728 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 WNT7BP56706 349 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 SKOR1P84550 965 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 USP17L2Q6R6M4 530 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 USP17L1Q7RTZ2 530 aa7.64□□□□□ -1.19
PTCH1-216ENST00000548379 DZIP3Q86Y13 1208 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms