RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 NWD2Q9ULI1 1742 aa32.67■■■□□ 2.82
CHD4-214ENST00000545942 TOPAZ1Q8N9V7 1692 aa32.66■■■□□ 2.82
CHD4-214ENST00000545942 PLEKHG3A1L390 1219 aa32.66■■■□□ 2.82
CHD4-214ENST00000545942 ACEP12821 1306 aa32.66■■■□□ 2.82
CHD4-214ENST00000545942 SRPK2P78362 688 aaKnown RBP32.65■■■□□ 2.82
CHD4-214ENST00000545942 CCDC9Q9Y3X0 531 aaKnown RBP32.65■■■□□ 2.82
CHD4-214ENST00000545942 NBPF8Q3BBV2 869 aa32.64■■■□□ 2.82
CHD4-214ENST00000545942 BTG4Q9NY30 223 aa32.62■■■□□ 2.81
CHD4-214ENST00000545942 TRPM1Q7Z4N2 1603 aa32.6■■■□□ 2.81
CHD4-214ENST00000545942 ROCK2O75116 1388 aaKnown RBP32.6■■■□□ 2.81
CHD4-214ENST00000545942 CABP2Q9NPB3 220 aa32.59■■■□□ 2.81
CHD4-214ENST00000545942 PPIP5K1Q6PFW1 1433 aa32.59■■■□□ 2.81
CHD4-214ENST00000545942 COL14A1Q05707 1796 aaKnown RBP32.58■■■□□ 2.81
CHD4-214ENST00000545942 SEPT12Q8IYM1 358 aa32.58■■■□□ 2.81
CHD4-214ENST00000545942 CRYBG1Q9Y4K1 1723 aa32.58■■■□□ 2.81
CHD4-214ENST00000545942 QRICH2Q9H0J4 1663 aa32.58■■■□□ 2.81
CHD4-214ENST00000545942 ONECUT3O60422 494 aaPredicted RBP32.57■■■□□ 2.8
CHD4-214ENST00000545942 PRDM11Q9NQV5 511 aa32.57■■■□□ 2.8
CHD4-214ENST00000545942 CCDC125Q86Z20 511 aa32.55■■■□□ 2.8
CHD4-214ENST00000545942 NUTM2GQ5VZR2 741 aa32.54■■■□□ 2.8
CHD4-214ENST00000545942 EP400Q96L91 3159 aa32.54■■■□□ 2.8
CHD4-214ENST00000545942 NRAPQ86VF7 1730 aa32.54■■■□□ 2.8
CHD4-214ENST00000545942 EVC2Q86UK5 1308 aa32.52■■■□□ 2.8
CHD4-214ENST00000545942 ABTB2Q8N961 1025 aa32.51■■■□□ 2.8
CHD4-214ENST00000545942 KIAA0232Q92628 1395 aa32.51■■■□□ 2.8
CHD4-214ENST00000545942 PHRF1Q9P1Y6 1649 aaKnown RBP32.49■■■□□ 2.79
CHD4-214ENST00000545942 CABP1Q9NZU7 370 aa32.49■■■□□ 2.79
CHD4-214ENST00000545942 BRD4O60885 1362 aaPredicted RBP32.48■■■□□ 2.79
CHD4-214ENST00000545942 ZC3H6P61129 1189 aaKnown RBP32.48■■■□□ 2.79
CHD4-214ENST00000545942 A0A0G2JS52 829 aa32.47■■■□□ 2.79
CHD4-214ENST00000545942 MYT1Q01538 1121 aa32.47■■■□□ 2.79
CHD4-214ENST00000545942 FAM98CQ17RN3 349 aaKnown RBP32.47■■■□□ 2.79
CHD4-214ENST00000545942 KRT27Q7Z3Y8 459 aa32.47■■■□□ 2.79
CHD4-214ENST00000545942 TRIM26Q12899 539 aaPredicted RBP32.46■■■□□ 2.79
CHD4-214ENST00000545942 CHRNA2Q15822 529 aa32.46■■■□□ 2.79
CHD4-214ENST00000545942 SPATA31A5Q5VU36 1347 aa32.45■■■□□ 2.79
CHD4-214ENST00000545942 SPATA31A7Q8IWB4 1347 aa32.45■■■□□ 2.79
CHD4-214ENST00000545942 BRWD3Q6RI45 1802 aa32.45■■■□□ 2.79
CHD4-214ENST00000545942 NLRP13Q86W25 1043 aa32.45■■■□□ 2.78
CHD4-214ENST00000545942 USP19O94966 1318 aa32.45■■■□□ 2.78
CHD4-214ENST00000545942 BLMP54132 1417 aaPredicted RBP32.44■■■□□ 2.78
CHD4-214ENST00000545942 TONSLQ96HA7 1378 aa32.43■■■□□ 2.78
CHD4-214ENST00000545942 USP6P35125 1406 aa32.42■■■□□ 2.78
CHD4-214ENST00000545942 NRKQ7Z2Y5 1582 aa32.41■■■□□ 2.78
CHD4-214ENST00000545942 CPDO75976 1380 aa32.39■■■□□ 2.78
CHD4-214ENST00000545942 CARD11Q9BXL7 1154 aa32.38■■■□□ 2.77
CHD4-214ENST00000545942 STRN4Q9NRL3 753 aa32.38■■■□□ 2.77
CHD4-214ENST00000545942 GCP02774 474 aa32.37■■■□□ 2.77
CHD4-214ENST00000545942 SPATA31A1Q5TZJ5 1347 aa32.36■■■□□ 2.77
CHD4-214ENST00000545942 SF3B2Q13435 895 aaKnown RBP32.35■■■□□ 2.77
CHD4-214ENST00000545942 NLRP6P59044 892 aa32.34■■■□□ 2.77
CHD4-214ENST00000545942 SSH2Q76I76 1423 aa32.34■■■□□ 2.77
CHD4-214ENST00000545942 SBNO2Q9Y2G9 1366 aa32.34■■■□□ 2.77
CHD4-214ENST00000545942 EVA1CP58658 441 aa32.33■■■□□ 2.77
CHD4-214ENST00000545942 ZNF692Q9BU19 519 aaPredicted RBP32.33■■■□□ 2.77
CHD4-214ENST00000545942 ZRANB1Q9UGI0 708 aa32.32■■■□□ 2.76
CHD4-214ENST00000545942 THSD7AQ9UPZ6 1657 aa32.3■■■□□ 2.76
CHD4-214ENST00000545942 CAMTA1Q9Y6Y1 1673 aa32.3■■■□□ 2.76
CHD4-214ENST00000545942 LMO7Q8WWI1 1683 aa32.28■■■□□ 2.76
CHD4-214ENST00000545942 DEFB132Q7Z7B7 95 aa32.27■■■□□ 2.76
CHD4-214ENST00000545942 USP35Q9P2H5 1018 aa32.26■■■□□ 2.76
CHD4-214ENST00000545942 SLIT3O75094 1523 aa32.26■■■□□ 2.76
CHD4-214ENST00000545942 TTC21BQ7Z4L5 1316 aa32.26■■■□□ 2.75
CHD4-214ENST00000545942 LARP1Q6PKG0 1096 aaKnown RBP32.26■■■□□ 2.75
CHD4-214ENST00000545942 CPSF1Q10570 1443 aaKnown RBP32.25■■■□□ 2.75
CHD4-214ENST00000545942 BARGINQ6ZT62 677 aa32.25■■■□□ 2.75
CHD4-214ENST00000545942 PIK3C2AO00443 1686 aa32.24■■■□□ 2.75
CHD4-214ENST00000545942 TTC21AQ8NDW8 1320 aa32.23■■■□□ 2.75
CHD4-214ENST00000545942 FAM182BQ5T319 152 aa32.23■■■□□ 2.75
CHD4-214ENST00000545942 KTN1Q86UP2 1357 aaKnown RBP32.22■■■□□ 2.75
CHD4-214ENST00000545942 ZBTB7CA1YPR0 619 aa32.22■■■□□ 2.75
CHD4-214ENST00000545942 COL5A2P05997 1499 aaPredicted RBP32.22■■■□□ 2.75
CHD4-214ENST00000545942 AATKQ6ZMQ8 1374 aa32.21■■■□□ 2.75
CHD4-214ENST00000545942 TCP11L2Q8N4U5 519 aa32.21■■■□□ 2.75
CHD4-214ENST00000545942 AKAP12Q02952 1782 aa32.2■■■□□ 2.75
CHD4-214ENST00000545942 BAG6P46379 1132 aa32.2■■■□□ 2.74
CHD4-214ENST00000545942 KCNH5Q8NCM2 988 aa32.18■■■□□ 2.74
CHD4-214ENST00000545942 THRAP3Q9Y2W1 955 aaKnown RBP32.18■■■□□ 2.74
CHD4-214ENST00000545942 CRB1P82279 1406 aa32.14■■■□□ 2.74
CHD4-214ENST00000545942 FAM196AQ6ZSG2 479 aa32.14■■■□□ 2.74
CHD4-214ENST00000545942 TMC1Q8TDI8 760 aa32.14■■■□□ 2.74
CHD4-214ENST00000545942 PDE3BQ13370 1112 aa32.13■■■□□ 2.73
CHD4-214ENST00000545942 ARHGEF25Q86VW2 580 aa32.12■■■□□ 2.73
CHD4-214ENST00000545942 PUS7Q96PZ0 661 aaKnown RBP32.12■■■□□ 2.73
CHD4-214ENST00000545942 CD163L1Q9NR16 1453 aa32.11■■■□□ 2.73
CHD4-214ENST00000545942 RGPD1P0DJD0 1748 aa32.11■■■□□ 2.73
CHD4-214ENST00000545942 SOX12O15370 315 aa32.1■■■□□ 2.73
CHD4-214ENST00000545942 HDGFL2Q7Z4V5 671 aaPredicted RBP32.1■■■□□ 2.73
CHD4-214ENST00000545942 MON2Q7Z3U7 1717 aa32.1■■■□□ 2.73
CHD4-214ENST00000545942 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.09■■■□□ 2.73
CHD4-214ENST00000545942 SLC12A5Q9H2X9 1139 aa32.09■■■□□ 2.73
CHD4-214ENST00000545942 AXIN2Q9Y2T1 843 aa32.09■■■□□ 2.73
CHD4-214ENST00000545942 ST20-MTHFSA0A0A6YYL1 179 aa32.08■■■□□ 2.73
CHD4-214ENST00000545942 SRCAPQ6ZRS2 3230 aa32.08■■■□□ 2.73
CHD4-214ENST00000545942 EN1Q05925 392 aaPredicted RBP32.07■■■□□ 2.72
CHD4-214ENST00000545942 TOM1L2Q6ZVM7 507 aa32.07■■■□□ 2.72
CHD4-214ENST00000545942 TESK2Q96S53 571 aa32.07■■■□□ 2.72
CHD4-214ENST00000545942 COL18A1P39060 1754 aa32.07■■■□□ 2.72
CHD4-214ENST00000545942 DISP2A7MBM2 1401 aa32.07■■■□□ 2.72
CHD4-214ENST00000545942 SLC24A1O60721 1099 aa32.06■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms