RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ARID4BQ4LE39 1312 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-239ENST00000545694 RALGAPBQ86X10 1494 aa8.68□□□□□ -1.02
SYNE1-239ENST00000545694 ZMYM4Q5VZL5 1548 aa8.68□□□□□ -1.02
SYNE1-239ENST00000545694 CEP152O94986 1710 aa8.68□□□□□ -1.02
SYNE1-239ENST00000545694 LAMC1P11047 1609 aa8.67□□□□□ -1.02
SYNE1-239ENST00000545694 FBXW7Q969H0 707 aa8.67□□□□□ -1.02
SYNE1-239ENST00000545694 ZC3H13Q5T200 1668 aaKnown RBP8.66□□□□□ -1.02
SYNE1-239ENST00000545694 MROH1Q8NDA8 1641 aa8.66□□□□□ -1.02
SYNE1-239ENST00000545694 PLA2R1Q13018 1463 aa8.66□□□□□ -1.02
SYNE1-239ENST00000545694 SPATA31E1Q6ZUB1 1445 aa8.66□□□□□ -1.02
SYNE1-239ENST00000545694 CENPBP07199 599 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-239ENST00000545694 CAMK2BQ13554 666 aa8.66□□□□□ -1.02
SYNE1-239ENST00000545694 RABGEF1Q9UJ41 708 aa8.66□□□□□ -1.02
SYNE1-239ENST00000545694 KIF1BO60333 1816 aa8.66□□□□□ -1.02
SYNE1-239ENST00000545694 REREQ9P2R6 1566 aa8.65□□□□□ -1.02
SYNE1-239ENST00000545694 EFCAB6Q5THR3 1501 aa8.65□□□□□ -1.02
SYNE1-239ENST00000545694 KIF3BO15066 747 aa8.65□□□□□ -1.02
SYNE1-239ENST00000545694 RBM33Q96EV2 1170 aaKnown RBP8.65□□□□□ -1.02
SYNE1-239ENST00000545694 KIAA1468Q9P260 1216 aa8.65□□□□□ -1.02
SYNE1-239ENST00000545694 ABCA6Q8N139 1617 aa8.65□□□□□ -1.03
SYNE1-239ENST00000545694 C6orf132Q5T0Z8 1188 aa8.64□□□□□ -1.03
SYNE1-239ENST00000545694 BBXQ8WY36 941 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-239ENST00000545694 DDX12PQ92771 950 aa8.64□□□□□ -1.03
SYNE1-239ENST00000545694 DIP2CQ9Y2E4 1556 aa8.64□□□□□ -1.03
SYNE1-239ENST00000545694 KIAA1210Q9ULL0 1709 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 PPRC1Q5VV67 1664 aaKnown RBP8.63□□□□□ -1.03
SYNE1-239ENST00000545694 HSPA5P11021 654 aaKnown RBP8.63□□□□□ -1.03
SYNE1-239ENST00000545694 BCAMP50895 628 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 FAM69CQ0P6D2 419 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 NBPF8Q3BBV2 869 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 ANKK1Q8NFD2 765 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 KIF13AQ9H1H9 1805 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 PRAG1Q86YV5 1406 aa8.63□□□□□ -1.03
SYNE1-239ENST00000545694 GPRASP1Q5JY77 1395 aa8.62□□□□□ -1.03
SYNE1-239ENST00000545694 TRPM1Q7Z4N2 1603 aa8.62□□□□□ -1.03
SYNE1-239ENST00000545694 FRMPD1Q5SYB0 1578 aa8.62□□□□□ -1.03
SYNE1-239ENST00000545694 EPAS1Q99814 870 aa8.62□□□□□ -1.03
SYNE1-239ENST00000545694 ARHGAP31Q2M1Z3 1444 aa8.62□□□□□ -1.03
SYNE1-239ENST00000545694 CNTLNQ9NXG0 1405 aa8.62□□□□□ -1.03
SYNE1-239ENST00000545694 ROCK2O75116 1388 aaKnown RBP8.61□□□□□ -1.03
SYNE1-239ENST00000545694 AGLP35573 1532 aa8.61□□□□□ -1.03
SYNE1-239ENST00000545694 CCER2I3L3R5 266 aa8.61□□□□□ -1.03
SYNE1-239ENST00000545694 SLC24A1O60721 1099 aa8.61□□□□□ -1.03
SYNE1-239ENST00000545694 DCAF11Q8TEB1 546 aa8.61□□□□□ -1.03
SYNE1-239ENST00000545694 SEPT9Q9UHD8 586 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-239ENST00000545694 TSPOAP1O95153 1857 aa8.61□□□□□ -1.03
SYNE1-239ENST00000545694 USP47Q96K76 1375 aa8.61□□□□□ -1.03
SYNE1-239ENST00000545694 ANP32CO43423 234 aa8.6□□□□□ -1.03
SYNE1-239ENST00000545694 DDX10Q13206 875 aaKnown RBP8.6□□□□□ -1.03
SYNE1-239ENST00000545694 CLTCL1P53675 1640 aa8.6□□□□□ -1.03
SYNE1-239ENST00000545694 CCDC7Q96M83 1385 aa8.6□□□□□ -1.03
SYNE1-239ENST00000545694 ABCC3O15438 1527 aa8.59□□□□□ -1.03
SYNE1-239ENST00000545694 CAMSAP1Q5T5Y3 1602 aa8.59□□□□□ -1.03
SYNE1-239ENST00000545694 IFFO2Q5TF58 517 aa8.59□□□□□ -1.03
SYNE1-239ENST00000545694 ZFRQ96KR1 1074 aaKnown RBP8.59□□□□□ -1.03
SYNE1-239ENST00000545694 CARD11Q9BXL7 1154 aa8.59□□□□□ -1.03
SYNE1-239ENST00000545694 MYOM2P54296 1465 aa8.58□□□□□ -1.04
SYNE1-239ENST00000545694 A0A0G2JS52 829 aa8.58□□□□□ -1.04
SYNE1-239ENST00000545694 RAPGEF3O95398 923 aa8.58□□□□□ -1.04
SYNE1-239ENST00000545694 LAPTM4BQ86VI4 370 aa8.58□□□□□ -1.04
SYNE1-239ENST00000545694 IFT172Q9UG01 1749 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 WASHC2AQ641Q2 1341 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 RPGRIP1LQ68CZ1 1315 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 WASHC2CQ9Y4E1 1318 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 SOWAHBA6NEL2 793 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 TRIM6-TRIM34B2RNG4 842 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 SPRYD3Q8NCJ5 442 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 MADDQ8WXG6 1647 aa8.57□□□□□ -1.04
SYNE1-239ENST00000545694 CFAP65Q6ZU64 1925 aaKnown RBP8.56□□□□□ -1.04
SYNE1-239ENST00000545694 NOS1P29475 1434 aa8.56□□□□□ -1.04
SYNE1-239ENST00000545694 ONECUT3O60422 494 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-239ENST00000545694 NBR1Q14596 966 aa8.56□□□□□ -1.04
SYNE1-239ENST00000545694 TSR1Q2NL82 804 aaKnown RBP8.56□□□□□ -1.04
SYNE1-239ENST00000545694 WBP1LQ9NX94 342 aa8.56□□□□□ -1.04
SYNE1-239ENST00000545694 NPATQ14207 1427 aa8.55□□□□□ -1.04
SYNE1-239ENST00000545694 ADGRB3O60242 1522 aa8.55□□□□□ -1.04
SYNE1-239ENST00000545694 ARHGEF40Q8TER5 1519 aa8.55□□□□□ -1.04
SYNE1-239ENST00000545694 PIK3C2BO00750 1634 aa8.55□□□□□ -1.04
SYNE1-239ENST00000545694 ZNF326Q5BKZ1 582 aaKnown RBP8.55□□□□□ -1.04
SYNE1-239ENST00000545694 SLC52A1Q9NWF4 448 aa8.55□□□□□ -1.04
SYNE1-239ENST00000545694 KDM2AQ9Y2K7 1162 aa8.55□□□□□ -1.04
SYNE1-239ENST00000545694 PPLO60437 1756 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 NRXN1Q9ULB1 1477 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 EIF3AQ14152 1382 aaKnown RBP8.54□□□□□ -1.04
SYNE1-239ENST00000545694 KTN1Q86UP2 1357 aaKnown RBP8.54□□□□□ -1.04
SYNE1-239ENST00000545694 MAP3K7O43318 606 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 RGL3Q3MIN7 710 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 GGT6Q6P531 493 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 YEATS2Q9ULM3 1422 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 KIF7Q2M1P5 1343 aa8.54□□□□□ -1.04
SYNE1-239ENST00000545694 IQGAP1P46940 1657 aa8.53□□□□□ -1.04
SYNE1-239ENST00000545694 RGS20O76081 388 aa8.53□□□□□ -1.04
SYNE1-239ENST00000545694 EN1Q05925 392 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-239ENST00000545694 CDCA8Q53HL2 280 aa8.53□□□□□ -1.04
SYNE1-239ENST00000545694 HIRIP3Q9BW71 556 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-239ENST00000545694 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-239ENST00000545694 SETBP1Q9Y6X0 1596 aa8.52□□□□□ -1.04
SYNE1-239ENST00000545694 PDIA6Q15084 440 aa8.52□□□□□ -1.05
SYNE1-239ENST00000545694 FAM98CQ17RN3 349 aaKnown RBP8.52□□□□□ -1.05
SYNE1-239ENST00000545694 CFAP44Q96MT7 982 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms